RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 CEP135Q66GS9 1140 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 MRM1Q6IN84 353 aaKnown RBP2.8□□□□□ -1.96
CHD3-217ENST00000574022 MRPL14Q6P1L8 145 aaKnown RBP2.8□□□□□ -1.96
CHD3-217ENST00000574022 VHLLQ6RSH7 139 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 RIPOR1Q6ZS17 1223 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 HFE2Q6ZVN8 426 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 RAB44Q7Z6P3 723 aaPredicted RBP2.8□□□□□ -1.96
CHD3-217ENST00000574022 WDR75Q8IWA0 830 aaKnown RBP2.8□□□□□ -1.96
CHD3-217ENST00000574022 RAVER1Q8IY67 606 aaKnown RBP2.8□□□□□ -1.96
CHD3-217ENST00000574022 LRRC47Q8N1G4 583 aaKnown RBP2.8□□□□□ -1.96
CHD3-217ENST00000574022 UBR7Q8N806 425 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 ATL2Q8NHH9 583 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 STK35Q8TDR2 534 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 TMEM40Q8WWA1 233 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 TSR2Q969E8 191 aaKnown RBP2.8□□□□□ -1.96
CHD3-217ENST00000574022 RELTQ969Z4 430 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 SLC30A3Q99726 388 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 SPOCK3Q9BQ16 436 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 FAM126AQ9BYI3 521 aaPredicted RBP2.8□□□□□ -1.96
CHD3-217ENST00000574022 EPN3Q9H201 632 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 IGFLR1Q9H665 355 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 SOS2Q07890 1332 aaPredicted RBP2.79□□□□□ -1.96
CHD3-217ENST00000574022 PRR36Q9H6K5 1346 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 LTBP3Q9NS15 1303 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 MEIS3P2A8K0S8 358 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 UPK3BL1B0FP48 263 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 UPK3BL2E5RIL1 263 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 AGRPO00253 132 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 KIF3BO15066 747 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 ADCY3O60266 1144 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 SUSD5O60279 629 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 HTR3BO95264 441 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 CPEP16870 476 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 L1CAMP32004 1257 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 GUCY2FP51841 1108 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 EPHB1P54762 984 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 RHBDL3P58872 404 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 GPLD1P80108 840 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 ZNF252P-AS1Q0IIN9 211 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 PCSK7Q16549 785 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 NFE2Q16621 373 aaPredicted RBP2.79□□□□□ -1.96
CHD3-217ENST00000574022 AKAP4Q5JQC9 854 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 MAP1SQ66K74 1059 aaPredicted RBP2.79□□□□□ -1.96
CHD3-217ENST00000574022 INTS3Q68E01 1043 aaKnown RBP2.79□□□□□ -1.96
CHD3-217ENST00000574022 WWC2Q6AWC2 1192 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 KIAA1211LQ6NV74 962 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 TMED8Q6PL24 325 aaPredicted RBP2.79□□□□□ -1.96
CHD3-217ENST00000574022 MPRIPQ6WCQ1 1025 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 UNC5AQ6ZN44 842 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 DDX46Q7L014 1031 aaKnown RBP2.79□□□□□ -1.96
CHD3-217ENST00000574022 MICALL1Q8N3F8 863 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 TAB3Q8N5C8 712 aaPredicted RBP2.79□□□□□ -1.96
CHD3-217ENST00000574022 GAL3ST3Q96A11 431 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 IPO9Q96P70 1041 aaKnown RBP2.79□□□□□ -1.96
CHD3-217ENST00000574022 RPS6KC1Q96S38 1066 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 KIF2CQ99661 725 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 CDC6Q99741 560 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 RUSC1Q9BVN2 902 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 NUCKS1Q9H1E3 243 aaKnown RBP2.79□□□□□ -1.96
CHD3-217ENST00000574022 PHAXQ9H814 394 aaKnown RBP2.79□□□□□ -1.96
CHD3-217ENST00000574022 PCDHB10Q9UN67 800 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 MAPRE3Q9UPY8 281 aa2.79□□□□□ -1.96
CHD3-217ENST00000574022 SLC22A31A6NKX4 558 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 FAM177BA6PVY3 158 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 H7C1W4 665 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 GFRA2O00451 464 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 PLD2O14939 933 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 TSPAN6O43657 245 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 BNIP3LO60238 219 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 CAND2O75155 1236 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 RAPGEF3O95398 923 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 GSTP1P09211 210 aaKnown RBP2.78□□□□□ -1.96
CHD3-217ENST00000574022 ESRRAP11474 423 aaPredicted RBP2.78□□□□□ -1.96
CHD3-217ENST00000574022 NME1P15531 152 aaKnown RBP2.78□□□□□ -1.96
CHD3-217ENST00000574022 PTPRAP18433 802 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 EIF2AK2P19525 551 aaKnown RBP2.78□□□□□ -1.96
CHD3-217ENST00000574022 CD33P20138 364 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 CCNFP41002 786 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 CDK8P49336 464 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 SLC7A5Q01650 507 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 TBC1D8BQ0IIM8 1120 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 AP3B2Q13367 1082 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 OS9Q13438 667 aaPredicted RBP2.78□□□□□ -1.96
CHD3-217ENST00000574022 PPP2R5AQ15172 486 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 TTF1Q15361 905 aaPredicted RBP2.78□□□□□ -1.96
CHD3-217ENST00000574022 ZYXQ15942 572 aaKnown RBP2.78□□□□□ -1.96
CHD3-217ENST00000574022 ZNF800Q2TB10 664 aaPredicted RBP eCLIP2.78□□□□□ -1.96
CHD3-217ENST00000574022 SLC10A6Q3KNW5 377 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 GNPTABQ3T906 1256 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 MAP9Q49MG5 647 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 FNDC3BQ53EP0 1204 aaKnown RBP2.78□□□□□ -1.96
CHD3-217ENST00000574022 FOXB2Q5VYV0 432 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 CCSAPQ6IQ19 270 aaPredicted RBP2.78□□□□□ -1.96
CHD3-217ENST00000574022 CNNM4Q6P4Q7 775 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 ADAMTSL4Q6UY14 1074 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 PDZRN4Q6ZMN7 1036 aaPredicted RBP2.78□□□□□ -1.96
CHD3-217ENST00000574022 NLRC3Q7RTR2 1065 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 VN1R5Q7Z5H4 357 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 RNF180Q86T96 592 aa2.78□□□□□ -1.96
CHD3-217ENST00000574022 CDAN1Q8IWY9 1227 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms