RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 CNNM2Q9H8M5 875 aa16.21■□□□□ 0.19
CCDC40-209ENST00000573474 MCM9Q9NXL9 1143 aa16.21■□□□□ 0.19
CCDC40-209ENST00000573474 SLC3A2P08195 630 aaKnown RBP16.2■□□□□ 0.18
CCDC40-209ENST00000573474 RPS12P25398 132 aaKnown RBP16.2■□□□□ 0.18
CCDC40-209ENST00000573474 AK2P54819 239 aa16.2■□□□□ 0.18
CCDC40-209ENST00000573474 EXOSC10Q01780 885 aaKnown RBP16.2■□□□□ 0.18
CCDC40-209ENST00000573474 CFAP100Q494V2 611 aa16.2■□□□□ 0.18
CCDC40-209ENST00000573474 CDC42EP5Q6NZY7 148 aa16.2■□□□□ 0.18
CCDC40-209ENST00000573474 MFSD6Q6ZSS7 791 aa16.2■□□□□ 0.18
CCDC40-209ENST00000573474 MAPKAPK5Q8IW41 473 aa16.2■□□□□ 0.18
CCDC40-209ENST00000573474 OGFOD1Q8N543 542 aa16.2■□□□□ 0.18
CCDC40-209ENST00000573474 ZBTB12Q9Y330 459 aaPredicted RBP16.2■□□□□ 0.18
CCDC40-209ENST00000573474 USP17L8P0C7I0 530 aa16.19■□□□□ 0.18
CCDC40-209ENST00000573474 PCP11498 1178 aaKnown RBP16.19■□□□□ 0.18
CCDC40-209ENST00000573474 YBX3P16989 372 aaKnown RBP eCLIP16.19■□□□□ 0.18
CCDC40-209ENST00000573474 MCM5P33992 734 aa16.19■□□□□ 0.18
CCDC40-209ENST00000573474 COL9A3Q14050 684 aaPredicted RBP16.19■□□□□ 0.18
CCDC40-209ENST00000573474 MB21D2Q8IYB1 491 aaPredicted RBP16.19■□□□□ 0.18
CCDC40-209ENST00000573474 KRT23Q9C075 422 aa16.19■□□□□ 0.18
CCDC40-209ENST00000573474 LIMCH1Q9UPQ0 1083 aa16.19■□□□□ 0.18
CCDC40-209ENST00000573474 LAMA4Q16363 1823 aa16.19■□□□□ 0.18
CCDC40-209ENST00000573474 FLT1P17948 1338 aa16.19■□□□□ 0.18
CCDC40-209ENST00000573474 WDR19Q8NEZ3 1342 aa16.19■□□□□ 0.18
CCDC40-209ENST00000573474 CYP2D7A0A087X1C5 515 aa16.18■□□□□ 0.18
CCDC40-209ENST00000573474 WDHD1O75717 1129 aaPredicted RBP16.18■□□□□ 0.18
CCDC40-209ENST00000573474 POLR3DP05423 398 aaPredicted RBP16.18■□□□□ 0.18
CCDC40-209ENST00000573474 C12orf60Q5U649 245 aa16.18■□□□□ 0.18
CCDC40-209ENST00000573474 ZSCAN31Q96LW9 406 aaPredicted RBP16.18■□□□□ 0.18
CCDC40-209ENST00000573474 FGRP09769 529 aa16.17■□□□□ 0.18
CCDC40-209ENST00000573474 CYP2D6P10635 497 aa16.17■□□□□ 0.18
CCDC40-209ENST00000573474 FGD1P98174 961 aa16.17■□□□□ 0.18
CCDC40-209ENST00000573474 DLGAP5Q15398 846 aa16.17■□□□□ 0.18
CCDC40-209ENST00000573474 Q6ZUG5 572 aa16.17■□□□□ 0.18
CCDC40-209ENST00000573474 FBXL16Q8N461 479 aa16.17■□□□□ 0.18
CCDC40-209ENST00000573474 MTMR14Q8NCE2 650 aa16.17■□□□□ 0.18
CCDC40-209ENST00000573474 DPF2Q92785 391 aa16.17■□□□□ 0.18
CCDC40-209ENST00000573474 TMX3Q96JJ7 454 aa16.17■□□□□ 0.18
CCDC40-209ENST00000573474 TCEANC2Q96MN5 208 aa16.17■□□□□ 0.18
CCDC40-209ENST00000573474 INCENPQ9NQS7 918 aa16.17■□□□□ 0.18
CCDC40-209ENST00000573474 SAP30BPQ9UHR5 308 aaKnown RBP16.17■□□□□ 0.18
CCDC40-209ENST00000573474 PCDHAC2Q9Y5I4 1007 aa16.17■□□□□ 0.18
CCDC40-209ENST00000573474 TACC3Q9Y6A5 838 aa16.17■□□□□ 0.18
CCDC40-209ENST00000573474 NEDD4P46934 1319 aa16.17■□□□□ 0.18
CCDC40-209ENST00000573474 TIAM2Q8IVF5 1701 aa16.16■□□□□ 0.18
CCDC40-209ENST00000573474 SPDYE2BA6NHP3 402 aa16.16■□□□□ 0.18
CCDC40-209ENST00000573474 B4E1Z4 1266 aa16.16■□□□□ 0.18
CCDC40-209ENST00000573474 PRC1O43663 620 aa16.16■□□□□ 0.18
CCDC40-209ENST00000573474 NPM3O75607 178 aaKnown RBP16.16■□□□□ 0.18
CCDC40-209ENST00000573474 SPDYE6P0CI01 402 aa16.16■□□□□ 0.18
CCDC40-209ENST00000573474 PDE4BQ07343 736 aa16.16■□□□□ 0.18
CCDC40-209ENST00000573474 PICALMQ13492 652 aa16.16■□□□□ 0.18
CCDC40-209ENST00000573474 TOB2Q14106 344 aaPredicted RBP16.16■□□□□ 0.18
CCDC40-209ENST00000573474 NOL8Q76FK4 1167 aaKnown RBP16.16■□□□□ 0.18
CCDC40-209ENST00000573474 PRMT6Q96LA8 375 aaPredicted RBP16.16■□□□□ 0.18
CCDC40-209ENST00000573474 IDI2Q9BXS1 227 aa16.16■□□□□ 0.18
CCDC40-209ENST00000573474 GJA3Q9Y6H8 435 aa16.16■□□□□ 0.18
CCDC40-209ENST00000573474 ORC4O43929 436 aa16.15■□□□□ 0.18
CCDC40-209ENST00000573474 HSP90AA1P07900 732 aaKnown RBP16.15■□□□□ 0.18
CCDC40-209ENST00000573474 NT5C2P49902 561 aa16.15■□□□□ 0.18
CCDC40-209ENST00000573474 ANTXR2P58335 489 aa16.15■□□□□ 0.18
CCDC40-209ENST00000573474 ZNF280AP59817 542 aaPredicted RBP16.15■□□□□ 0.18
CCDC40-209ENST00000573474 RRP12Q5JTH9 1297 aaKnown RBP16.15■□□□□ 0.18
CCDC40-209ENST00000573474 TTC6Q86TZ1 520 aa16.15■□□□□ 0.18
CCDC40-209ENST00000573474 STK11IPQ8N1F8 1099 aa16.15■□□□□ 0.18
CCDC40-209ENST00000573474 ESR2Q92731 530 aa16.15■□□□□ 0.18
CCDC40-209ENST00000573474 AGXT2Q9BYV1 514 aa16.15■□□□□ 0.18
CCDC40-209ENST00000573474 TDRD3Q9H7E2 651 aaKnown RBP16.15■□□□□ 0.18
CCDC40-209ENST00000573474 DDX4Q9NQI0 724 aaKnown RBP16.15■□□□□ 0.18
CCDC40-209ENST00000573474 SH2B1Q9NRF2 756 aaPredicted RBP16.15■□□□□ 0.18
CCDC40-209ENST00000573474 TOMM22Q9NS69 142 aa16.15■□□□□ 0.18
CCDC40-209ENST00000573474 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.15■□□□□ 0.18
CCDC40-209ENST00000573474 ZNF541Q9H0D2 1346 aa16.15■□□□□ 0.18
CCDC40-209ENST00000573474 ROBO3Q96MS0 1386 aa16.14■□□□□ 0.17
CCDC40-209ENST00000573474 BAZ2AQ9UIF9 1905 aaKnown RBP16.14■□□□□ 0.17
CCDC40-209ENST00000573474 SMIM22K7EJ46 135 aa16.14■□□□□ 0.17
CCDC40-209ENST00000573474 KDM4AO75164 1064 aa16.14■□□□□ 0.17
CCDC40-209ENST00000573474 GMPSP49915 693 aaPredicted RBP16.14■□□□□ 0.17
CCDC40-209ENST00000573474 PLCD1P51178 756 aa16.14■□□□□ 0.17
CCDC40-209ENST00000573474 CUL4AQ13619 759 aa16.14■□□□□ 0.17
CCDC40-209ENST00000573474 GPR162Q16538 588 aa16.14■□□□□ 0.17
CCDC40-209ENST00000573474 CYB5R4Q7L1T6 521 aa16.14■□□□□ 0.17
CCDC40-209ENST00000573474 CHST3Q7LGC8 479 aa16.14■□□□□ 0.17
CCDC40-209ENST00000573474 TMEM87BQ96K49 555 aa16.14■□□□□ 0.17
CCDC40-209ENST00000573474 LARP6Q9BRS8 491 aaKnown RBP16.14■□□□□ 0.17
CCDC40-209ENST00000573474 MTA3Q9BTC8 594 aa16.14■□□□□ 0.17
CCDC40-209ENST00000573474 LRRC2Q9BYS8 371 aa16.14■□□□□ 0.17
CCDC40-209ENST00000573474 OSBPL5Q9H0X9 879 aaPredicted RBP16.14■□□□□ 0.17
CCDC40-209ENST00000573474 ZNF287Q9HBT7 754 aa16.14■□□□□ 0.17
CCDC40-209ENST00000573474 TMOD2Q9NZR1 351 aa16.14■□□□□ 0.17
CCDC40-209ENST00000573474 ZSWIM5Q9P217 1185 aa16.14■□□□□ 0.17
CCDC40-209ENST00000573474 ADAMTSL1Q8N6G6 1762 aa16.13■□□□□ 0.17
CCDC40-209ENST00000573474 GRIN3BO60391 1043 aa16.13■□□□□ 0.17
CCDC40-209ENST00000573474 NFIAQ12857 509 aa16.13■□□□□ 0.17
CCDC40-209ENST00000573474 SPRYD3Q8NCJ5 442 aa16.13■□□□□ 0.17
CCDC40-209ENST00000573474 BRF1Q92994 677 aa16.13■□□□□ 0.17
CCDC40-209ENST00000573474 ZBED3Q96IU2 234 aaPredicted RBP16.13■□□□□ 0.17
CCDC40-209ENST00000573474 MYOZ2Q9NPC6 264 aa16.13■□□□□ 0.17
CCDC40-209ENST00000573474 RNF181Q9P0P0 153 aa16.13■□□□□ 0.17
CCDC40-209ENST00000573474 ZNF70Q9UC06 446 aaPredicted RBP16.13■□□□□ 0.17
CCDC40-209ENST00000573474 FAM198AQ9UFP1 575 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms