RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 TMEM131LA2VDJ0 1609 aa3.91□□□□□ -1.78
VPS35-209ENST00000568642 USP32Q8NFA0 1604 aa3.91□□□□□ -1.78
VPS35-209ENST00000568642 COL22A1Q8NFW1 1626 aaPredicted RBP3.91□□□□□ -1.78
VPS35-209ENST00000568642 GOLGA3Q08378 1498 aa3.91□□□□□ -1.78
VPS35-209ENST00000568642 ADAMTS7Q9UKP4 1686 aa3.9□□□□□ -1.78
VPS35-209ENST00000568642 FMN1Q68DA7 1419 aa3.9□□□□□ -1.78
VPS35-209ENST00000568642 CCER2I3L3R5 266 aa3.9□□□□□ -1.79
VPS35-209ENST00000568642 FOXN1O15353 648 aa3.9□□□□□ -1.79
VPS35-209ENST00000568642 FAM13AO94988 1023 aa3.9□□□□□ -1.79
VPS35-209ENST00000568642 SRGNP10124 158 aa3.9□□□□□ -1.79
VPS35-209ENST00000568642 COL6A1P12109 1028 aa3.9□□□□□ -1.79
VPS35-209ENST00000568642 HCLS1P14317 486 aaPredicted RBP3.9□□□□□ -1.79
VPS35-209ENST00000568642 NOS2P35228 1153 aa3.9□□□□□ -1.79
VPS35-209ENST00000568642 ZEB1P37275 1124 aaPredicted RBP3.9□□□□□ -1.79
VPS35-209ENST00000568642 EIF1AXP47813 144 aaKnown RBP3.9□□□□□ -1.79
VPS35-209ENST00000568642 GTF2IP78347 998 aa3.9□□□□□ -1.79
VPS35-209ENST00000568642 EXOSC10Q01780 885 aaKnown RBP3.9□□□□□ -1.79
VPS35-209ENST00000568642 EML3Q32P44 896 aa3.9□□□□□ -1.79
VPS35-209ENST00000568642 TMEM95Q3KNT9 176 aa3.9□□□□□ -1.79
VPS35-209ENST00000568642 HABP4Q5JVS0 413 aaKnown RBP3.9□□□□□ -1.79
VPS35-209ENST00000568642 MCTP1Q6DN14 999 aa3.9□□□□□ -1.79
VPS35-209ENST00000568642 VASH1Q7L8A9 365 aaPredicted RBP3.9□□□□□ -1.79
VPS35-209ENST00000568642 LRP10Q7Z4F1 713 aa3.9□□□□□ -1.79
VPS35-209ENST00000568642 FERMT3Q86UX7 667 aa3.9□□□□□ -1.79
VPS35-209ENST00000568642 TRIM22Q8IYM9 498 aa3.9□□□□□ -1.79
VPS35-209ENST00000568642 TSEN2Q8NCE0 465 aaKnown RBP3.9□□□□□ -1.79
VPS35-209ENST00000568642 PNMA1Q8ND90 353 aa3.9□□□□□ -1.79
VPS35-209ENST00000568642 GTPBP3Q969Y2 492 aaKnown RBP3.9□□□□□ -1.79
VPS35-209ENST00000568642 C1QTNF2Q9BXJ5 285 aa3.9□□□□□ -1.79
VPS35-209ENST00000568642 OXCT2Q9BYC2 517 aaPredicted RBP3.9□□□□□ -1.79
VPS35-209ENST00000568642 ZNF700Q9H0M5 742 aa3.9□□□□□ -1.79
VPS35-209ENST00000568642 MAP4K5Q9Y4K4 846 aa3.9□□□□□ -1.79
VPS35-209ENST00000568642 PZPP20742 1482 aa3.9□□□□□ -1.79
VPS35-209ENST00000568642 UNC79Q9P2D8 2635 aa3.9□□□□□ -1.79
VPS35-209ENST00000568642 ABCA3Q99758 1704 aa3.9□□□□□ -1.79
VPS35-209ENST00000568642 ABCC5O15440 1437 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 WASLO00401 505 aaPredicted RBP3.89□□□□□ -1.79
VPS35-209ENST00000568642 KIF3BO15066 747 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 CDC45O75419 566 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 BPNT1O95861 308 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 APBA3O96018 575 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 ATF3P18847 181 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 MX2P20592 715 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 CTCFP49711 727 aaPredicted RBP3.89□□□□□ -1.79
VPS35-209ENST00000568642 MCL1Q07820 350 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 LAMC2Q13753 1193 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 ARSHQ5FYA8 562 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 FAM182BQ5T319 152 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 MEI1Q5TIA1 1274 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 GGT6Q6P531 493 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 ANKS3Q6ZW76 656 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 TRIM50Q86XT4 487 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 GJD3Q8N144 294 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 SDR16C5Q8N3Y7 309 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 CELF2-AS1Q8N7Q2 184 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 GPRASP2Q96D09 838 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 DMRTB1Q96MA1 342 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 DEPDC7Q96QD5 511 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 ZNF395Q9H8N7 513 aaPredicted RBP3.89□□□□□ -1.79
VPS35-209ENST00000568642 ARHGEF10LQ9HCE6 1279 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 MRS2Q9HD23 443 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 NEUROD4Q9HD90 331 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 CYLDQ9NQC7 956 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 LEMD3Q9Y2U8 911 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 NCOA2Q15596 1464 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 TET3O43151 1660 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 SAMD9Q5K651 1589 aa3.89□□□□□ -1.79
VPS35-209ENST00000568642 MIA2Q96PC5 1412 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 ARHGAP35Q9NRY4 1499 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 PNMA6FA0A0J9YX94 578 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 M0R2N6 131 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 DYRK3O43781 588 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 ZNF500O60304 480 aaPredicted RBP3.88□□□□□ -1.79
VPS35-209ENST00000568642 PTCD1O75127 700 aaKnown RBP3.88□□□□□ -1.79
VPS35-209ENST00000568642 YBX3P16989 372 aaKnown RBP eCLIP3.88□□□□□ -1.799e-7■□□□□ 10.4
VPS35-209ENST00000568642 MCCP23508 829 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 ATP1A2P50993 1020 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 EFCAB2Q5VUJ9 269 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 ERAP2Q6P179 960 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 C14orf80Q86SX3 495 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 BPHLQ86WA6 291 aaPredicted RBP3.88□□□□□ -1.79
VPS35-209ENST00000568642 THNSL2Q86YJ6 484 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 UNC5CLQ8IV45 518 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 CKAP2LQ8IYA6 745 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 TRPM4Q8TD43 1214 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 HNRNPLLQ8WVV9 542 aaKnown RBP3.88□□□□□ -1.79
VPS35-209ENST00000568642 AIDAQ96BJ3 306 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 SEC16BQ96JE7 1060 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 SRPK1Q96SB4 655 aaKnown RBP3.88□□□□□ -1.79
VPS35-209ENST00000568642 DNAJC7Q99615 494 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 KRTAP4-5Q9BYR2 181 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 OSBPL7Q9BZF2 842 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 INO80BQ9C086 356 aaPredicted RBP3.88□□□□□ -1.79
VPS35-209ENST00000568642 PDGFDQ9GZP0 370 aaPredicted RBP3.88□□□□□ -1.79
VPS35-209ENST00000568642 NIF3L1Q9GZT8 377 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 TMX1Q9H3N1 280 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 HOMER2Q9NSB8 354 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 SWAP70Q9UH65 585 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 ADAMTS1Q9UHI8 967 aa3.88□□□□□ -1.79
VPS35-209ENST00000568642 TCEAL9Q9UHQ7 104 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms