RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 ATRNL1Q5VV63 1379 aa21.2■□□□□ 0.98
CDH3-205ENST00000566808 LOC285556D6RIA3 1793 aa21.19■□□□□ 0.98
CDH3-205ENST00000566808 DDX10Q13206 875 aaKnown RBP21.19■□□□□ 0.98
CDH3-205ENST00000566808 METTL24Q5JXM2 366 aa21.19■□□□□ 0.98
CDH3-205ENST00000566808 GADL1Q6ZQY3 521 aa21.19■□□□□ 0.98
CDH3-205ENST00000566808 WWC1Q8IX03 1113 aa21.19■□□□□ 0.98
CDH3-205ENST00000566808 SCYL3Q8IZE3 742 aa21.19■□□□□ 0.98
CDH3-205ENST00000566808 VGLL2Q8N8G2 317 aa21.19■□□□□ 0.98
CDH3-205ENST00000566808 NBPF3Q9H094 633 aa21.19■□□□□ 0.98
CDH3-205ENST00000566808 FANCIQ9NVI1 1328 aa21.19■□□□□ 0.98
CDH3-205ENST00000566808 HMGCRP04035 888 aa21.18■□□□□ 0.98
CDH3-205ENST00000566808 NFIAQ12857 509 aa21.18■□□□□ 0.98
CDH3-205ENST00000566808 DAGLAQ9Y4D2 1042 aa21.18■□□□□ 0.98
CDH3-205ENST00000566808 ZHX2Q9Y6X8 837 aa21.18■□□□□ 0.98
CDH3-205ENST00000566808 ALDH1L1O75891 902 aa21.17■□□□□ 0.98
CDH3-205ENST00000566808 PDE8BO95263 885 aa21.17■□□□□ 0.98
CDH3-205ENST00000566808 SYN1P17600 705 aa21.17■□□□□ 0.98
CDH3-205ENST00000566808 PTPRAP18433 802 aa21.17■□□□□ 0.98
CDH3-205ENST00000566808 CDC42EP5Q6NZY7 148 aa21.17■□□□□ 0.98
CDH3-205ENST00000566808 UBE2OQ9C0C9 1292 aaKnown RBP21.17■□□□□ 0.98
CDH3-205ENST00000566808 PRKRIP1Q9H875 184 aaPredicted RBP21.17■□□□□ 0.98
CDH3-205ENST00000566808 AFG3L2Q9Y4W6 797 aa21.17■□□□□ 0.98
CDH3-205ENST00000566808 COL2A1P02458 1487 aaPredicted RBP21.16■□□□□ 0.98
CDH3-205ENST00000566808 RPTORQ8N122 1335 aa21.16■□□□□ 0.98
CDH3-205ENST00000566808 FAM110CQ1W6H9 321 aa21.16■□□□□ 0.98
CDH3-205ENST00000566808 WDR66Q8TBY9 1149 aa21.16■□□□□ 0.98
CDH3-205ENST00000566808 SUCLG2Q96I99 432 aa21.16■□□□□ 0.98
CDH3-205ENST00000566808 C11orf49Q9H6J7 331 aa21.16■□□□□ 0.98
CDH3-205ENST00000566808 FAM198AQ9UFP1 575 aa21.16■□□□□ 0.98
CDH3-205ENST00000566808 DNAH12Q6ZR08 3092 aa21.16■□□□□ 0.98
CDH3-205ENST00000566808 PRUNE2Q8WUY3 3088 aa21.16■□□□□ 0.98
CDH3-205ENST00000566808 MYH2Q9UKX2 1941 aa21.16■□□□□ 0.98
CDH3-205ENST00000566808 PHF20L1A8MW92 1017 aa21.15■□□□□ 0.98
CDH3-205ENST00000566808 LRRC24Q50LG9 513 aa21.15■□□□□ 0.98
CDH3-205ENST00000566808 ANKRD13CQ8N6S4 541 aa21.15■□□□□ 0.98
CDH3-205ENST00000566808 KAZALD1Q96I82 304 aa21.15■□□□□ 0.98
CDH3-205ENST00000566808 PNMA3Q9UL41 463 aa21.15■□□□□ 0.98
CDH3-205ENST00000566808 AGTPBP1Q9UPW5 1226 aa21.15■□□□□ 0.98
CDH3-205ENST00000566808 PLXNB2O15031 1838 aa21.15■□□□□ 0.98
CDH3-205ENST00000566808 VAMP4O75379 141 aa21.14■□□□□ 0.97
CDH3-205ENST00000566808 PUM3Q15397 648 aaKnown RBP21.14■□□□□ 0.97
CDH3-205ENST00000566808 DIXDC1Q155Q3 683 aa21.14■□□□□ 0.97
CDH3-205ENST00000566808 HMX1Q9NP08 348 aaPredicted RBP21.14■□□□□ 0.97
CDH3-205ENST00000566808 IFIT1P09914 478 aaKnown RBP21.13■□□□□ 0.97
CDH3-205ENST00000566808 ZEB1P37275 1124 aaPredicted RBP21.13■□□□□ 0.97
CDH3-205ENST00000566808 RABL6Q3YEC7 729 aaPredicted RBP21.13■□□□□ 0.97
CDH3-205ENST00000566808 SRCIN1Q9C0H9 1055 aa21.13■□□□□ 0.97
CDH3-205ENST00000566808 ATAD5Q96QE3 1844 aa21.13■□□□□ 0.97
CDH3-205ENST00000566808 RFX7Q2KHR2 1363 aa21.12■□□□□ 0.97
CDH3-205ENST00000566808 MAST2Q6P0Q8 1798 aa21.12■□□□□ 0.97
CDH3-205ENST00000566808 UTYO14607 1347 aa21.11■□□□□ 0.97
CDH3-205ENST00000566808 TRIM75PA6NK02 468 aa21.11■□□□□ 0.97
CDH3-205ENST00000566808 FGFR2P21802 821 aa21.11■□□□□ 0.97
CDH3-205ENST00000566808 FAM109BQ6ICB4 259 aaPredicted RBP21.11■□□□□ 0.97
CDH3-205ENST00000566808 BICC1Q9H694 974 aaKnown RBP21.11■□□□□ 0.97
CDH3-205ENST00000566808 USP40Q9NVE5 1235 aa21.11■□□□□ 0.97
CDH3-205ENST00000566808 OGDHLQ9ULD0 1010 aa21.11■□□□□ 0.97
CDH3-205ENST00000566808 LRRFIP2Q9Y608 721 aaKnown RBP21.11■□□□□ 0.97
CDH3-205ENST00000566808 FRMPD3Q5JV73 1810 aa21.11■□□□□ 0.97
CDH3-205ENST00000566808 PFASO15067 1338 aa21.1■□□□□ 0.97
CDH3-205ENST00000566808 SLC4A10Q6U841 1118 aa21.1■□□□□ 0.97
CDH3-205ENST00000566808 GUCD1Q96NT3 240 aa21.1■□□□□ 0.97
CDH3-205ENST00000566808 CTNND1O60716 968 aaKnown RBP21.09■□□□□ 0.97
CDH3-205ENST00000566808 ENTPD3O75355 529 aa21.09■□□□□ 0.97
CDH3-205ENST00000566808 NBPF7P0C2Y1 421 aaPredicted RBP21.09■□□□□ 0.97
CDH3-205ENST00000566808 PRDX5P30044 214 aa21.09■□□□□ 0.97
CDH3-205ENST00000566808 GCLCP48506 637 aaPredicted RBP21.09■□□□□ 0.97
CDH3-205ENST00000566808 ZFPM1Q8IX07 1006 aa21.09■□□□□ 0.97
CDH3-205ENST00000566808 PROCA1Q8NCQ7 364 aaPredicted RBP21.09■□□□□ 0.97
CDH3-205ENST00000566808 LDHBP07195 334 aaKnown RBP21.08■□□□□ 0.97
CDH3-205ENST00000566808 SLC5A1P13866 664 aa21.08■□□□□ 0.97
CDH3-205ENST00000566808 RGS3P49796 1198 aa21.08■□□□□ 0.97
CDH3-205ENST00000566808 MAP3K10Q02779 954 aa21.08■□□□□ 0.97
CDH3-205ENST00000566808 NCBP3Q53F19 620 aaKnown RBP21.08■□□□□ 0.97
CDH3-205ENST00000566808 IDI2Q9BXS1 227 aa21.08■□□□□ 0.97
CDH3-205ENST00000566808 SPINK5Q9NQ38 1064 aaPredicted RBP21.08■□□□□ 0.97
CDH3-205ENST00000566808 POTEB2H3BUK9 544 aa21.07■□□□□ 0.96
CDH3-205ENST00000566808 EXOSC9Q06265 439 aaKnown RBP21.07■□□□□ 0.96
CDH3-205ENST00000566808 TRIM32Q13049 653 aa21.07■□□□□ 0.96
CDH3-205ENST00000566808 TREML2Q5T2D2 321 aa21.07■□□□□ 0.96
CDH3-205ENST00000566808 ANKRD44Q8N8A2 993 aa21.07■□□□□ 0.96
CDH3-205ENST00000566808 GJD2Q9UKL4 321 aa21.07■□□□□ 0.96
CDH3-205ENST00000566808 SALL1Q9NSC2 1324 aa21.06■□□□□ 0.96
CDH3-205ENST00000566808 MAP3K21Q5TCX8 1036 aa21.06■□□□□ 0.96
CDH3-205ENST00000566808 ZSCAN29Q8IWY8 852 aaPredicted RBP21.06■□□□□ 0.96
CDH3-205ENST00000566808 TRIB2Q92519 343 aa21.06■□□□□ 0.96
CDH3-205ENST00000566808 LPIN2Q92539 896 aa21.06■□□□□ 0.96
CDH3-205ENST00000566808 CDH23Q9H251 3354 aa21.05■□□□□ 0.96
CDH3-205ENST00000566808 COL6A1P12109 1028 aa21.05■□□□□ 0.96
CDH3-205ENST00000566808 PRKAR2AP13861 404 aaKnown RBP21.05■□□□□ 0.96
CDH3-205ENST00000566808 PABPC4Q13310 644 aaKnown RBP eCLIP21.05■□□□□ 0.96
CDH3-205ENST00000566808 SH3BP5LQ7L8J4 393 aa21.05■□□□□ 0.96
CDH3-205ENST00000566808 KLHDC4Q8TBB5 520 aa21.05■□□□□ 0.96
CDH3-205ENST00000566808 LTBP2Q14767 1821 aa21.04■□□□□ 0.96
CDH3-205ENST00000566808 MDM2Q00987 491 aaPredicted RBP21.04■□□□□ 0.96
CDH3-205ENST00000566808 PRDM6Q9NQX0 595 aa21.04■□□□□ 0.96
CDH3-205ENST00000566808 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.04■□□□□ 0.96
CDH3-205ENST00000566808 MUC3AQ02505 3323 aa21.04■□□□□ 0.96
CDH3-205ENST00000566808 GAKO14976 1311 aa21.04■□□□□ 0.96
CDH3-205ENST00000566808 CCDC84Q86UT8 332 aaPredicted RBP21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms