RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 FAM83AQ86UY5 434 aa24.66■■□□□ 1.54
CLN3-212ENST00000564574 IFNL3Q8IZI9 196 aa24.66■■□□□ 1.54
CLN3-212ENST00000564574 LSG1Q9H089 658 aaKnown RBP24.66■■□□□ 1.54
CLN3-212ENST00000564574 DCP1AQ9NPI6 582 aaPredicted RBP24.66■■□□□ 1.54
CLN3-212ENST00000564574 MKRN1Q9UHC7 482 aaKnown RBP24.66■■□□□ 1.54
CLN3-212ENST00000564574 PGAP2Q9UHJ9 254 aa24.66■■□□□ 1.54
CLN3-212ENST00000564574 LAMB1P07942 1786 aa24.66■■□□□ 1.54
CLN3-212ENST00000564574 NFIAQ12857 509 aa24.65■■□□□ 1.54
CLN3-212ENST00000564574 ANGEL2Q5VTE6 544 aaKnown RBP24.65■■□□□ 1.54
CLN3-212ENST00000564574 MAPKAPK5Q8IW41 473 aa24.65■■□□□ 1.54
CLN3-212ENST00000564574 NMRK2Q9NPI5 230 aa24.65■■□□□ 1.54
CLN3-212ENST00000564574 GGA3Q9NZ52 723 aa24.65■■□□□ 1.54
CLN3-212ENST00000564574 LAMA4Q16363 1823 aa24.64■■□□□ 1.54
CLN3-212ENST00000564574 FOXP2O15409 715 aa24.64■■□□□ 1.54
CLN3-212ENST00000564574 CACNB3P54284 484 aa24.64■■□□□ 1.54
CLN3-212ENST00000564574 PICALMQ13492 652 aa24.64■■□□□ 1.54
CLN3-212ENST00000564574 EAPPQ56P03 285 aaPredicted RBP24.64■■□□□ 1.54
CLN3-212ENST00000564574 FAM151AQ8WW52 585 aa24.64■■□□□ 1.54
CLN3-212ENST00000564574 MAP4K1Q92918 833 aa24.64■■□□□ 1.54
CLN3-212ENST00000564574 DCPSQ96C86 337 aaKnown RBP24.64■■□□□ 1.54
CLN3-212ENST00000564574 OSBPL5Q9H0X9 879 aaPredicted RBP24.64■■□□□ 1.54
CLN3-212ENST00000564574 NAPBQ9H115 298 aa24.64■■□□□ 1.54
CLN3-212ENST00000564574 EPB41L4AQ9HCS5 686 aaPredicted RBP24.64■■□□□ 1.54
CLN3-212ENST00000564574 DDX4Q9NQI0 724 aaKnown RBP24.64■■□□□ 1.54
CLN3-212ENST00000564574 FAM198AQ9UFP1 575 aa24.64■■□□□ 1.54
CLN3-212ENST00000564574 ASTN2O75129 1339 aaPredicted RBP24.63■■□□□ 1.53
CLN3-212ENST00000564574 TCP10L2B9ZVM9 353 aa24.63■■□□□ 1.53
CLN3-212ENST00000564574 TDO2P48775 406 aa24.63■■□□□ 1.53
CLN3-212ENST00000564574 PTH1RQ03431 593 aa24.63■■□□□ 1.53
CLN3-212ENST00000564574 ARPP21Q9UBL0 812 aaPredicted RBP24.63■■□□□ 1.53
CLN3-212ENST00000564574 CTNNA3Q9UI47 895 aa24.63■■□□□ 1.53
CLN3-212ENST00000564574 PPP2R3BQ9Y5P8 575 aa24.63■■□□□ 1.53
CLN3-212ENST00000564574 U3KPZ7 1027 aaPredicted RBP24.63■■□□□ 1.53
CLN3-212ENST00000564574 AMOTL1Q8IY63 956 aa24.62■■□□□ 1.53
CLN3-212ENST00000564574 BACH2Q9BYV9 841 aa24.62■■□□□ 1.53
CLN3-212ENST00000564574 DHX36Q9H2U1 1008 aaKnown RBP24.62■■□□□ 1.53
CLN3-212ENST00000564574 FGAP02671 866 aa24.61■■□□□ 1.53
CLN3-212ENST00000564574 SBK1Q52WX2 424 aa24.61■■□□□ 1.53
CLN3-212ENST00000564574 MCM9Q9NXL9 1143 aa24.61■■□□□ 1.53
CLN3-212ENST00000564574 CNTNAP1P78357 1384 aa24.61■■□□□ 1.53
CLN3-212ENST00000564574 ATRNL1Q5VV63 1379 aa24.6■■□□□ 1.53
CLN3-212ENST00000564574 LDHDQ86WU2 507 aa24.6■■□□□ 1.53
CLN3-212ENST00000564574 TCP10Q12799 353 aa24.59■■□□□ 1.53
CLN3-212ENST00000564574 RASA3Q14644 834 aa24.59■■□□□ 1.53
CLN3-212ENST00000564574 TTC6Q86TZ1 520 aa24.59■■□□□ 1.53
CLN3-212ENST00000564574 SULF1Q8IWU6 871 aa24.59■■□□□ 1.53
CLN3-212ENST00000564574 CLEC11AQ9Y240 323 aa24.59■■□□□ 1.53
CLN3-212ENST00000564574 KIF3CO14782 793 aa24.58■■□□□ 1.53
CLN3-212ENST00000564574 POLR3DP05423 398 aaPredicted RBP24.58■■□□□ 1.53
CLN3-212ENST00000564574 HLA-DOAP06340 250 aa24.58■■□□□ 1.53
CLN3-212ENST00000564574 CTR9Q6PD62 1173 aa24.58■■□□□ 1.53
CLN3-212ENST00000564574 USP26Q9BXU7 913 aa24.58■■□□□ 1.53
CLN3-212ENST00000564574 DEFB129Q9H1M3 183 aa24.58■■□□□ 1.53
CLN3-212ENST00000564574 TAOK2Q9UL54 1235 aa24.58■■□□□ 1.53
CLN3-212ENST00000564574 RBM8AQ9Y5S9 174 aaKnown RBP24.58■■□□□ 1.53
CLN3-212ENST00000564574 SIPA1L1O43166 1804 aa24.57■■□□□ 1.52
CLN3-212ENST00000564574 USP17L12C9JPN9 530 aa24.57■■□□□ 1.52
CLN3-212ENST00000564574 USP17L21D6R901 530 aa24.57■■□□□ 1.52
CLN3-212ENST00000564574 SEC24BO95487 1268 aa24.57■■□□□ 1.52
CLN3-212ENST00000564574 ZFPM1Q8IX07 1006 aa24.57■■□□□ 1.52
CLN3-212ENST00000564574 SAP30BPQ9UHR5 308 aaKnown RBP24.57■■□□□ 1.52
CLN3-212ENST00000564574 IMMTQ16891 758 aaKnown RBP24.56■■□□□ 1.52
CLN3-212ENST00000564574 C12orf60Q5U649 245 aa24.56■■□□□ 1.52
CLN3-212ENST00000564574 CDC37L1Q7L3B6 337 aa24.56■■□□□ 1.52
CLN3-212ENST00000564574 ZSCAN29Q8IWY8 852 aaPredicted RBP24.56■■□□□ 1.52
CLN3-212ENST00000564574 TMEM39BQ9GZU3 492 aa24.56■■□□□ 1.52
CLN3-212ENST00000564574 PALD1Q9ULE6 856 aa24.56■■□□□ 1.52
CLN3-212ENST00000564574 ZNF213O14771 459 aa24.55■■□□□ 1.52
CLN3-212ENST00000564574 POTEIP0CG38 1075 aa24.55■■□□□ 1.52
CLN3-212ENST00000564574 POTEJP0CG39 1038 aa24.55■■□□□ 1.52
CLN3-212ENST00000564574 MCCP23508 829 aa24.55■■□□□ 1.52
CLN3-212ENST00000564574 NECTIN1Q15223 517 aa24.55■■□□□ 1.52
CLN3-212ENST00000564574 RNF20Q5VTR2 975 aa24.55■■□□□ 1.52
CLN3-212ENST00000564574 SH3BP5LQ7L8J4 393 aa24.55■■□□□ 1.52
CLN3-212ENST00000564574 KRT26Q7Z3Y9 468 aa24.55■■□□□ 1.52
CLN3-212ENST00000564574 HOOK2Q96ED9 719 aa24.55■■□□□ 1.52
CLN3-212ENST00000564574 EHD4Q9H223 541 aa24.55■■□□□ 1.52
CLN3-212ENST00000564574 UPF2Q9HAU5 1272 aaKnown RBP24.55■■□□□ 1.52
CLN3-212ENST00000564574 PI4KBQ9UBF8 816 aa24.55■■□□□ 1.52
CLN3-212ENST00000564574 ANAPC4Q9UJX5 808 aa24.55■■□□□ 1.52
CLN3-212ENST00000564574 MYH8P13535 1937 aa24.55■■□□□ 1.52
CLN3-212ENST00000564574 ROBO3Q96MS0 1386 aa24.54■■□□□ 1.52
CLN3-212ENST00000564574 DDTLA6NHG4 134 aaPredicted RBP24.54■■□□□ 1.52
CLN3-212ENST00000564574 MINDY4BA8MYZ0 360 aa24.54■■□□□ 1.52
CLN3-212ENST00000564574 PPARAQ07869 468 aa24.54■■□□□ 1.52
CLN3-212ENST00000564574 TEPSINQ96N21 525 aa24.54■■□□□ 1.52
CLN3-212ENST00000564574 SLC3A2P08195 630 aaKnown RBP24.53■■□□□ 1.52
CLN3-212ENST00000564574 HSPA4P34932 840 aa24.53■■□□□ 1.52
CLN3-212ENST00000564574 FOXP4Q8IVH2 680 aaPredicted RBP24.53■■□□□ 1.52
CLN3-212ENST00000564574 CSRNP1Q96S65 589 aa24.53■■□□□ 1.52
CLN3-212ENST00000564574 CYP2D6P10635 497 aa24.52■■□□□ 1.52
CLN3-212ENST00000564574 HSPA6P17066 643 aa24.52■■□□□ 1.52
CLN3-212ENST00000564574 CREB3L3Q68CJ9 461 aa24.52■■□□□ 1.52
CLN3-212ENST00000564574 CHADLQ6NUI6 762 aa24.52■■□□□ 1.52
CLN3-212ENST00000564574 USP48Q86UV5 1035 aa24.52■■□□□ 1.52
CLN3-212ENST00000564574 SCAF8Q9UPN6 1271 aaKnown RBP24.52■■□□□ 1.52
CLN3-212ENST00000564574 ADM5C9JUS6 153 aa24.51■■□□□ 1.51
CLN3-212ENST00000564574 SLC27A2O14975 620 aa24.51■■□□□ 1.51
CLN3-212ENST00000564574 CYP21A2P08686 494 aa24.51■■□□□ 1.51
CLN3-212ENST00000564574 PLCD1P51178 756 aa24.51■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms