RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 NFIAQ12857 509 aa9.21□□□□□ -0.94
VPS4A-203ENST00000564399 CCDC27Q2M243 656 aa9.21□□□□□ -0.94
VPS4A-203ENST00000564399 LRIT3Q3SXY7 679 aa9.21□□□□□ -0.94
VPS4A-203ENST00000564399 LRRC24Q50LG9 513 aa9.21□□□□□ -0.94
VPS4A-203ENST00000564399 CDC42EP5Q6NZY7 148 aa9.21□□□□□ -0.94
VPS4A-203ENST00000564399 PRRT2Q7Z6L0 340 aaPredicted RBP9.21□□□□□ -0.94
VPS4A-203ENST00000564399 ANKRD13CQ8N6S4 541 aa9.21□□□□□ -0.94
VPS4A-203ENST00000564399 UBE2OQ9C0C9 1292 aaKnown RBP9.21□□□□□ -0.94
VPS4A-203ENST00000564399 SRCIN1Q9C0H9 1055 aa9.21□□□□□ -0.94
VPS4A-203ENST00000564399 NBPF3Q9H094 633 aa9.21□□□□□ -0.94
VPS4A-203ENST00000564399 USP40Q9NVE5 1235 aa9.21□□□□□ -0.94
VPS4A-203ENST00000564399 DAGLAQ9Y4D2 1042 aa9.21□□□□□ -0.94
VPS4A-203ENST00000564399 LAMA3Q16787 3333 aa9.2□□□□□ -0.94
VPS4A-203ENST00000564399 PTPRAP18433 802 aa9.2□□□□□ -0.94
VPS4A-203ENST00000564399 EXOSC9Q06265 439 aaKnown RBP9.2□□□□□ -0.94
VPS4A-203ENST00000564399 DIXDC1Q155Q3 683 aa9.2□□□□□ -0.94
VPS4A-203ENST00000564399 ZSCAN29Q8IWY8 852 aaPredicted RBP9.2□□□□□ -0.94
VPS4A-203ENST00000564399 SCYL3Q8IZE3 742 aa9.2□□□□□ -0.94
VPS4A-203ENST00000564399 TDHQ8IZJ6 230 aa9.2□□□□□ -0.94
VPS4A-203ENST00000564399 ANKLE1Q8NAG6 615 aa9.2□□□□□ -0.94
VPS4A-203ENST00000564399 WDR66Q8TBY9 1149 aa9.2□□□□□ -0.94
VPS4A-203ENST00000564399 COL25A1Q9BXS0 654 aaPredicted RBP9.2□□□□□ -0.94
VPS4A-203ENST00000564399 SPINK5Q9NQ38 1064 aaPredicted RBP9.2□□□□□ -0.94
VPS4A-203ENST00000564399 SLC45A1Q9Y2W3 748 aa9.2□□□□□ -0.94
VPS4A-203ENST00000564399 LRRFIP2Q9Y608 721 aaKnown RBP9.2□□□□□ -0.94
VPS4A-203ENST00000564399 IL16Q14005 1332 aa9.2□□□□□ -0.94
VPS4A-203ENST00000564399 FANCIQ9NVI1 1328 aa9.2□□□□□ -0.94
VPS4A-203ENST00000564399 DOCK2Q92608 1830 aa9.19□□□□□ -0.94
VPS4A-203ENST00000564399 MYH2Q9UKX2 1941 aa9.19□□□□□ -0.94
VPS4A-203ENST00000564399 TRIM75PA6NK02 468 aa9.19□□□□□ -0.94
VPS4A-203ENST00000564399 HMGCRP04035 888 aa9.19□□□□□ -0.94
VPS4A-203ENST00000564399 NBPF7P0C2Y1 421 aaPredicted RBP9.19□□□□□ -0.94
VPS4A-203ENST00000564399 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.19□□□□□ -0.94
VPS4A-203ENST00000564399 ZFPM1Q8IX07 1006 aa9.19□□□□□ -0.94
VPS4A-203ENST00000564399 KAZALD1Q96I82 304 aa9.19□□□□□ -0.94
VPS4A-203ENST00000564399 BICC1Q9H694 974 aaKnown RBP9.19□□□□□ -0.94
VPS4A-203ENST00000564399 C11orf49Q9H6J7 331 aa9.19□□□□□ -0.94
VPS4A-203ENST00000564399 HMX1Q9NP08 348 aaPredicted RBP9.19□□□□□ -0.94
VPS4A-203ENST00000564399 FAM198AQ9UFP1 575 aa9.19□□□□□ -0.94
VPS4A-203ENST00000564399 AFG3L2Q9Y4W6 797 aa9.19□□□□□ -0.94
VPS4A-203ENST00000564399 PHF20L1A8MW92 1017 aa9.18□□□□□ -0.94
VPS4A-203ENST00000564399 LDHBP07195 334 aaKnown RBP9.18□□□□□ -0.94
VPS4A-203ENST00000564399 SLC5A1P13866 664 aa9.18□□□□□ -0.94
VPS4A-203ENST00000564399 RGS3P49796 1198 aa9.18□□□□□ -0.94
VPS4A-203ENST00000564399 PUM3Q15397 648 aaKnown RBP9.18□□□□□ -0.94
VPS4A-203ENST00000564399 DDX60LQ5H9U9 1706 aaKnown RBP9.18□□□□□ -0.94
VPS4A-203ENST00000564399 RPTORQ8N122 1335 aa9.18□□□□□ -0.94
VPS4A-203ENST00000564399 VGLL2Q8N8G2 317 aa9.18□□□□□ -0.94
VPS4A-203ENST00000564399 KLHDC4Q8TBB5 520 aa9.18□□□□□ -0.94
VPS4A-203ENST00000564399 TTC28Q96AY4 2481 aa9.18□□□□□ -0.94
VPS4A-203ENST00000564399 PNMA3Q9UL41 463 aa9.18□□□□□ -0.94
VPS4A-203ENST00000564399 SALL2Q9Y467 1007 aaPredicted RBP9.18□□□□□ -0.94
VPS4A-203ENST00000564399 DOCK1Q14185 1865 aa9.17□□□□□ -0.94
VPS4A-203ENST00000564399 PHIPQ8WWQ0 1821 aa9.17□□□□□ -0.94
VPS4A-203ENST00000564399 KIF16BQ96L93 1317 aa9.17□□□□□ -0.94
VPS4A-203ENST00000564399 CTNND1O60716 968 aaKnown RBP9.17□□□□□ -0.94
VPS4A-203ENST00000564399 PRDX5P30044 214 aa9.17□□□□□ -0.94
VPS4A-203ENST00000564399 FAM110CQ1W6H9 321 aa9.17□□□□□ -0.94
VPS4A-203ENST00000564399 CCDC84Q86UT8 332 aaPredicted RBP9.17□□□□□ -0.94
VPS4A-203ENST00000564399 AGTPBP1Q9UPW5 1226 aa9.17□□□□□ -0.94
VPS4A-203ENST00000564399 MYO9BQ13459 2157 aa9.17□□□□□ -0.94
VPS4A-203ENST00000564399 ENTPD3O75355 529 aa9.16□□□□□ -0.94
VPS4A-203ENST00000564399 FGFR2P21802 821 aa9.16□□□□□ -0.94
VPS4A-203ENST00000564399 GCLCP48506 637 aaPredicted RBP9.16□□□□□ -0.94
VPS4A-203ENST00000564399 TRIM32Q13049 653 aa9.16□□□□□ -0.94
VPS4A-203ENST00000564399 RABL6Q3YEC7 729 aaPredicted RBP9.16□□□□□ -0.94
VPS4A-203ENST00000564399 TREML2Q5T2D2 321 aa9.16□□□□□ -0.94
VPS4A-203ENST00000564399 ANKRD44Q8N8A2 993 aa9.16□□□□□ -0.94
VPS4A-203ENST00000564399 LPIN2Q92539 896 aa9.16□□□□□ -0.94
VPS4A-203ENST00000564399 FAM161BQ96MY7 647 aa9.16□□□□□ -0.94
VPS4A-203ENST00000564399 GNL3LQ9NVN8 582 aaKnown RBP9.16□□□□□ -0.94
VPS4A-203ENST00000564399 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.16□□□□□ -0.94
VPS4A-203ENST00000564399 DDTLA6NHG4 134 aaPredicted RBP9.15□□□□□ -0.94
VPS4A-203ENST00000564399 NPM3O75607 178 aaKnown RBP9.15□□□□□ -0.94
VPS4A-203ENST00000564399 SLURP2P0DP57 97 aa9.15□□□□□ -0.94
VPS4A-203ENST00000564399 CYP2B6P20813 491 aa9.15□□□□□ -0.94
VPS4A-203ENST00000564399 MDM2Q00987 491 aaPredicted RBP9.15□□□□□ -0.94
VPS4A-203ENST00000564399 SPP2Q13103 211 aa9.15□□□□□ -0.94
VPS4A-203ENST00000564399 PABPC4Q13310 644 aaKnown RBP eCLIP9.15□□□□□ -0.94
VPS4A-203ENST00000564399 PICALMQ13492 652 aa9.15□□□□□ -0.94
VPS4A-203ENST00000564399 SH3BP5LQ7L8J4 393 aa9.15□□□□□ -0.94
VPS4A-203ENST00000564399 WDR63Q8IWG1 891 aa9.15□□□□□ -0.94
VPS4A-203ENST00000564399 PROCA1Q8NCQ7 364 aaPredicted RBP9.15□□□□□ -0.94
VPS4A-203ENST00000564399 IDI2Q9BXS1 227 aa9.15□□□□□ -0.94
VPS4A-203ENST00000564399 GJD2Q9UKL4 321 aa9.15□□□□□ -0.94
VPS4A-203ENST00000564399 OGDHLQ9ULD0 1010 aa9.15□□□□□ -0.94
VPS4A-203ENST00000564399 ATRNL1Q5VV63 1379 aa9.14□□□□□ -0.95
VPS4A-203ENST00000564399 UTYO14607 1347 aa9.14□□□□□ -0.95
VPS4A-203ENST00000564399 PFASO15067 1338 aa9.14□□□□□ -0.95
VPS4A-203ENST00000564399 EYA2O00167 538 aa9.14□□□□□ -0.95
VPS4A-203ENST00000564399 PRKAR2AP13861 404 aaKnown RBP9.14□□□□□ -0.95
VPS4A-203ENST00000564399 KCNA4P22459 653 aa9.14□□□□□ -0.95
VPS4A-203ENST00000564399 DZIP1Q86YF9 867 aaKnown RBP9.14□□□□□ -0.95
VPS4A-203ENST00000564399 TRIB2Q92519 343 aa9.14□□□□□ -0.95
VPS4A-203ENST00000564399 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.14□□□□□ -0.95
VPS4A-203ENST00000564399 DENND2AQ9ULE3 1009 aa9.14□□□□□ -0.95
VPS4A-203ENST00000564399 PLXNB2O15031 1838 aa9.13□□□□□ -0.95
VPS4A-203ENST00000564399 ATAD5Q96QE3 1844 aa9.13□□□□□ -0.95
VPS4A-203ENST00000564399 FAM196BA6NMK8 535 aa9.13□□□□□ -0.95
VPS4A-203ENST00000564399 POTEB2H3BUK9 544 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms