RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 BTBD18B2RXH4 712 aa15.18■□□□□ 0.02
CLN3-210ENST00000563874 ATF3P18847 181 aa15.18■□□□□ 0.02
CLN3-210ENST00000563874 TMEM67Q5HYA8 995 aa15.18■□□□□ 0.02
CLN3-210ENST00000563874 TOM1L2Q6ZVM7 507 aa15.18■□□□□ 0.02
CLN3-210ENST00000563874 CMTR1Q8N1G2 835 aaKnown RBP15.18■□□□□ 0.02
CLN3-210ENST00000563874 KCNJ14Q9UNX9 436 aa15.18■□□□□ 0.02
CLN3-210ENST00000563874 KIF1AQ12756 1690 aa15.17■□□□□ 0.02
CLN3-210ENST00000563874 TMEM94Q12767 1356 aa15.17■□□□□ 0.02
CLN3-210ENST00000563874 POLR3GO15318 223 aaPredicted RBP15.17■□□□□ 0.02
CLN3-210ENST00000563874 GUCY1A2P33402 732 aa15.17■□□□□ 0.02
CLN3-210ENST00000563874 PLA2G4AP47712 749 aa15.17■□□□□ 0.02
CLN3-210ENST00000563874 NTRK3Q16288 839 aa15.17■□□□□ 0.02
CLN3-210ENST00000563874 TMCO3Q6UWJ1 677 aa15.17■□□□□ 0.02
CLN3-210ENST00000563874 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.17■□□□□ 0.02
CLN3-210ENST00000563874 TMEM139Q8IV31 216 aa15.17■□□□□ 0.02
CLN3-210ENST00000563874 FAM217BQ9NTX9 383 aaPredicted RBP15.17■□□□□ 0.02
CLN3-210ENST00000563874 WWC3Q9ULE0 1092 aa15.17■□□□□ 0.02
CLN3-210ENST00000563874 CCP110O43303 1012 aa15.17■□□□□ 0.02
CLN3-210ENST00000563874 TADA3O75528 432 aa15.17■□□□□ 0.02
CLN3-210ENST00000563874 PRR29P0C7W0 189 aa15.17■□□□□ 0.02
CLN3-210ENST00000563874 CDK11BP21127 795 aaKnown RBP15.17■□□□□ 0.02
CLN3-210ENST00000563874 GNG11P61952 73 aa15.17■□□□□ 0.02
CLN3-210ENST00000563874 CTDSPL2Q05D32 466 aa15.17■□□□□ 0.02
CLN3-210ENST00000563874 FMR1Q06787 632 aaKnown RBP eCLIP15.17■□□□□ 0.02
CLN3-210ENST00000563874 TOGARAM2Q6ZUX3 1019 aa15.17■□□□□ 0.02
CLN3-210ENST00000563874 DESI2Q9BSY9 194 aa15.17■□□□□ 0.02
CLN3-210ENST00000563874 GREM2Q9H772 168 aa15.17■□□□□ 0.02
CLN3-210ENST00000563874 CNNM1Q9NRU3 951 aa15.17■□□□□ 0.02
CLN3-210ENST00000563874 IGDCC4Q8TDY8 1250 aa15.16■□□□□ 0.02
CLN3-210ENST00000563874 BAG1Q99933 345 aaPredicted RBP15.16■□□□□ 0.02
CLN3-210ENST00000563874 ZKSCAN3Q9BRR0 538 aa15.16■□□□□ 0.02
CLN3-210ENST00000563874 NFE2L3Q9Y4A8 694 aa15.16■□□□□ 0.02
CLN3-210ENST00000563874 CUTAO60888 179 aa15.16■□□□□ 0.02
CLN3-210ENST00000563874 ITGA6P23229 1130 aa15.16■□□□□ 0.02
CLN3-210ENST00000563874 DHX8Q14562 1220 aaKnown RBP15.16■□□□□ 0.02
CLN3-210ENST00000563874 LY9Q9HBG7 655 aa15.16■□□□□ 0.02
CLN3-210ENST00000563874 ZBTB22O15209 634 aa15.15■□□□□ 0.02
CLN3-210ENST00000563874 POLR2DO15514 142 aaKnown RBP15.15■□□□□ 0.02
CLN3-210ENST00000563874 RRP12Q5JTH9 1297 aaKnown RBP15.15■□□□□ 0.02
CLN3-210ENST00000563874 HELBQ8NG08 1087 aaPredicted RBP15.15■□□□□ 0.02
CLN3-210ENST00000563874 ZBTB9Q96C00 473 aa15.15■□□□□ 0.02
CLN3-210ENST00000563874 TOMM22Q9NS69 142 aa15.15■□□□□ 0.02
CLN3-210ENST00000563874 IFIT3O14879 490 aaKnown RBP15.15■□□□□ 0.02
CLN3-210ENST00000563874 ARHGAP6O43182 974 aa15.15■□□□□ 0.02
CLN3-210ENST00000563874 ZSCAN12O43309 604 aa15.15■□□□□ 0.02
CLN3-210ENST00000563874 PHKA1P46020 1223 aa15.15■□□□□ 0.02
CLN3-210ENST00000563874 KRI1Q8N9T8 703 aaKnown RBP15.15■□□□□ 0.02
CLN3-210ENST00000563874 ARGLU1Q9NWB6 273 aaPredicted RBP15.15■□□□□ 0.02
CLN3-210ENST00000563874 MAN1B1Q9UKM7 699 aa15.15■□□□□ 0.02
CLN3-210ENST00000563874 RIPOR2Q9Y4F9 1068 aa15.15■□□□□ 0.02
CLN3-210ENST00000563874 SLC12A7Q9Y666 1083 aa15.15■□□□□ 0.02
CLN3-210ENST00000563874 WDR19Q8NEZ3 1342 aa15.15■□□□□ 0.02
CLN3-210ENST00000563874 TUBB4AP04350 444 aa15.15■□□□□ 0.02
CLN3-210ENST00000563874 PDE6AP16499 860 aa15.15■□□□□ 0.02
CLN3-210ENST00000563874 KARSQ15046 597 aaKnown RBP15.15■□□□□ 0.02
CLN3-210ENST00000563874 TEX35Q5T0J7 233 aa15.15■□□□□ 0.02
CLN3-210ENST00000563874 AIDAQ96BJ3 306 aa15.15■□□□□ 0.02
CLN3-210ENST00000563874 SERTAD1Q9UHV2 236 aa15.15■□□□□ 0.02
CLN3-210ENST00000563874 PCDH11XQ9BZA7 1347 aa15.15■□□□□ 0.02
CLN3-210ENST00000563874 PCDH11YQ9BZA8 1340 aa15.15■□□□□ 0.02
CLN3-210ENST00000563874 SNAP23O00161 211 aa15.14■□□□□ 0.01
CLN3-210ENST00000563874 ZRANB2O95218 330 aaKnown RBP eCLIP15.14■□□□□ 0.01
CLN3-210ENST00000563874 TOB1P50616 345 aaPredicted RBP15.14■□□□□ 0.01
CLN3-210ENST00000563874 NOSTRINQ8IVI9 506 aa15.14■□□□□ 0.01
CLN3-210ENST00000563874 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.14■□□□□ 0.01
CLN3-210ENST00000563874 SAMSN1Q9NSI8 373 aaKnown RBP15.14■□□□□ 0.01
CLN3-210ENST00000563874 ZSWIM5Q9P217 1185 aa15.14■□□□□ 0.01
CLN3-210ENST00000563874 SPEF2Q9C093 1822 aa15.14■□□□□ 0.01
CLN3-210ENST00000563874 CASQ1P31415 396 aa15.14■□□□□ 0.01
CLN3-210ENST00000563874 SSRP1Q08945 709 aaKnown RBP15.14■□□□□ 0.01
CLN3-210ENST00000563874 NR5A1Q13285 461 aa15.14■□□□□ 0.01
CLN3-210ENST00000563874 MTF1Q14872 753 aa15.14■□□□□ 0.01
CLN3-210ENST00000563874 POSTNQ15063 836 aa15.14■□□□□ 0.01
CLN3-210ENST00000563874 DIS3L2Q8IYB7 885 aaKnown RBP15.14■□□□□ 0.01
CLN3-210ENST00000563874 CNKSR2Q8WXI2 1034 aa15.14■□□□□ 0.01
CLN3-210ENST00000563874 IRX2Q9BZI1 471 aaPredicted RBP15.14■□□□□ 0.01
CLN3-210ENST00000563874 RIC1Q4ADV7 1423 aa15.14■□□□□ 0.01
CLN3-210ENST00000563874 FAM237AA0A1B0GTK4 181 aa15.13■□□□□ 0.01
CLN3-210ENST00000563874 PCCAP05165 728 aaPredicted RBP15.13■□□□□ 0.01
CLN3-210ENST00000563874 CSF1RP07333 972 aa15.13■□□□□ 0.01
CLN3-210ENST00000563874 MDM2Q00987 491 aaPredicted RBP15.13■□□□□ 0.01
CLN3-210ENST00000563874 HLFQ16534 295 aa15.13■□□□□ 0.01
CLN3-210ENST00000563874 USP49Q70CQ1 688 aa15.13■□□□□ 0.01
CLN3-210ENST00000563874 TC2NQ8N9U0 490 aa15.13■□□□□ 0.01
CLN3-210ENST00000563874 ZBTB38Q8NAP3 1195 aaPredicted RBP15.13■□□□□ 0.01
CLN3-210ENST00000563874 ZSWIM4Q9H7M6 989 aa15.13■□□□□ 0.01
CLN3-210ENST00000563874 ZCCHC17Q9NP64 241 aaKnown RBP15.13■□□□□ 0.01
CLN3-210ENST00000563874 TACC3Q9Y6A5 838 aa15.13■□□□□ 0.01
CLN3-210ENST00000563874 C4AP0C0L4 1744 aa15.13■□□□□ 0.01
CLN3-210ENST00000563874 C4BP0C0L5 1744 aa15.13■□□□□ 0.01
CLN3-210ENST00000563874 EFCAB8A8MWE9 144 aa15.13■□□□□ 0.01
CLN3-210ENST00000563874 ERVV-2B6SEH9 535 aa15.13■□□□□ 0.01
CLN3-210ENST00000563874 DNAJC10Q8IXB1 793 aa15.13■□□□□ 0.01
CLN3-210ENST00000563874 CCDC34Q96HJ3 373 aa15.13■□□□□ 0.01
CLN3-210ENST00000563874 SEC31BQ9NQW1 1179 aa15.13■□□□□ 0.01
CLN3-210ENST00000563874 ALS2Q96Q42 1657 aa15.13■□□□□ 0.01
CLN3-210ENST00000563874 NUP188Q5SRE5 1749 aa15.13■□□□□ 0.01
CLN3-210ENST00000563874 KIF6Q6ZMV9 814 aa15.13■□□□□ 0.01
CLN3-210ENST00000563874 TTLL11Q8NHH1 800 aa15.13■□□□□ 0.01
CLN3-210ENST00000563874 TMEM87BQ96K49 555 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms