RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 CDC42EP5Q6NZY7 148 aa16.1■□□□□ 0.17
VPS39-206ENST00000562662 MAPKAPK5Q8IW41 473 aa16.1■□□□□ 0.17
VPS39-206ENST00000562662 STAG1Q8WVM7 1258 aa16.1■□□□□ 0.17
VPS39-206ENST00000562662 ALDH8A1Q9H2A2 487 aaPredicted RBP16.1■□□□□ 0.17
VPS39-206ENST00000562662 ARPP21Q9UBL0 812 aaPredicted RBP16.1■□□□□ 0.17
VPS39-206ENST00000562662 FLT1P17948 1338 aa16.1■□□□□ 0.17
VPS39-206ENST00000562662 MINDY4BA8MYZ0 360 aa16.09■□□□□ 0.17
VPS39-206ENST00000562662 USP17L12C9JPN9 530 aa16.09■□□□□ 0.17
VPS39-206ENST00000562662 USP17L21D6R901 530 aa16.09■□□□□ 0.17
VPS39-206ENST00000562662 SMIM22K7EJ46 135 aa16.09■□□□□ 0.17
VPS39-206ENST00000562662 K7ELQ4 463 aaPredicted RBP16.09■□□□□ 0.17
VPS39-206ENST00000562662 WDHD1O75717 1129 aaPredicted RBP16.09■□□□□ 0.17
VPS39-206ENST00000562662 HMGB1P09429 215 aaKnown RBP16.09■□□□□ 0.17
VPS39-206ENST00000562662 SLC4A3P48751 1232 aa16.09■□□□□ 0.17
VPS39-206ENST00000562662 AK2P54819 239 aa16.09■□□□□ 0.17
VPS39-206ENST00000562662 EIF6P56537 245 aaKnown RBP16.09■□□□□ 0.17
VPS39-206ENST00000562662 EXOSC10Q01780 885 aaKnown RBP16.09■□□□□ 0.17
VPS39-206ENST00000562662 EVX2Q03828 476 aa16.09■□□□□ 0.17
VPS39-206ENST00000562662 AKNAD1Q5T1N1 836 aa16.09■□□□□ 0.17
VPS39-206ENST00000562662 MB21D2Q8IYB1 491 aaPredicted RBP16.09■□□□□ 0.17
VPS39-206ENST00000562662 PDRG1Q9NUG6 133 aa16.09■□□□□ 0.17
VPS39-206ENST00000562662 USP40Q9NVE5 1235 aa16.09■□□□□ 0.17
VPS39-206ENST00000562662 MCM9Q9NXL9 1143 aa16.09■□□□□ 0.17
VPS39-206ENST00000562662 HDAC9Q9UKV0 1011 aa16.09■□□□□ 0.17
VPS39-206ENST00000562662 NEDD4P46934 1319 aa16.09■□□□□ 0.17
VPS39-206ENST00000562662 ZNF541Q9H0D2 1346 aa16.09■□□□□ 0.17
VPS39-206ENST00000562662 USP17L8P0C7I0 530 aa16.08■□□□□ 0.16
VPS39-206ENST00000562662 CYP2D6P10635 497 aa16.08■□□□□ 0.16
VPS39-206ENST00000562662 RPS12P25398 132 aaKnown RBP16.08■□□□□ 0.16
VPS39-206ENST00000562662 MCM2P49736 904 aa16.08■□□□□ 0.16
VPS39-206ENST00000562662 RBM5P52756 815 aaKnown RBP eCLIP16.08■□□□□ 0.16
VPS39-206ENST00000562662 DHX32Q7L7V1 743 aaKnown RBP16.08■□□□□ 0.16
VPS39-206ENST00000562662 NCOA7Q8NI08 942 aa16.08■□□□□ 0.16
VPS39-206ENST00000562662 NKX2-3Q8TAU0 364 aa16.08■□□□□ 0.16
VPS39-206ENST00000562662 TCEANC2Q96MN5 208 aa16.08■□□□□ 0.16
VPS39-206ENST00000562662 DDX4Q9NQI0 724 aaKnown RBP16.08■□□□□ 0.16
VPS39-206ENST00000562662 ROBO3Q96MS0 1386 aa16.08■□□□□ 0.16
VPS39-206ENST00000562662 FGRP09769 529 aa16.07■□□□□ 0.16
VPS39-206ENST00000562662 C12orf60Q5U649 245 aa16.07■□□□□ 0.16
VPS39-206ENST00000562662 MTMR14Q8NCE2 650 aa16.07■□□□□ 0.16
VPS39-206ENST00000562662 ZBED3Q96IU2 234 aaPredicted RBP16.07■□□□□ 0.16
VPS39-206ENST00000562662 INCENPQ9NQS7 918 aa16.07■□□□□ 0.16
VPS39-206ENST00000562662 WDR19Q8NEZ3 1342 aa16.06■□□□□ 0.16
VPS39-206ENST00000562662 SPDYE2BA6NHP3 402 aa16.06■□□□□ 0.16
VPS39-206ENST00000562662 SPDYE6P0CI01 402 aa16.06■□□□□ 0.16
VPS39-206ENST00000562662 GMPSP49915 693 aaPredicted RBP16.06■□□□□ 0.16
VPS39-206ENST00000562662 MMP14P50281 582 aa16.06■□□□□ 0.16
VPS39-206ENST00000562662 ANTXR2P58335 489 aa16.06■□□□□ 0.16
VPS39-206ENST00000562662 NFIAQ12857 509 aa16.06■□□□□ 0.16
VPS39-206ENST00000562662 TOB2Q14106 344 aaPredicted RBP16.06■□□□□ 0.16
VPS39-206ENST00000562662 MFSD6Q6ZSS7 791 aa16.06■□□□□ 0.16
VPS39-206ENST00000562662 RALYLQ86SE5 291 aaKnown RBP16.06■□□□□ 0.16
VPS39-206ENST00000562662 OGFOD1Q8N543 542 aa16.06■□□□□ 0.16
VPS39-206ENST00000562662 PRMT6Q96LA8 375 aaPredicted RBP16.06■□□□□ 0.16
VPS39-206ENST00000562662 IDI2Q9BXS1 227 aa16.06■□□□□ 0.16
VPS39-206ENST00000562662 RNF41Q9H4P4 317 aaPredicted RBP16.06■□□□□ 0.16
VPS39-206ENST00000562662 CNNM2Q9H8M5 875 aa16.06■□□□□ 0.16
VPS39-206ENST00000562662 SAP30BPQ9UHR5 308 aaKnown RBP16.06■□□□□ 0.16
VPS39-206ENST00000562662 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.06■□□□□ 0.16
VPS39-206ENST00000562662 SHTN1A0MZ66 631 aa16.05■□□□□ 0.16
VPS39-206ENST00000562662 B4E1Z4 1266 aa16.05■□□□□ 0.16
VPS39-206ENST00000562662 NPM3O75607 178 aaKnown RBP16.05■□□□□ 0.16
VPS39-206ENST00000562662 PCP11498 1178 aaKnown RBP16.05■□□□□ 0.16
VPS39-206ENST00000562662 ZNF280AP59817 542 aaPredicted RBP16.05■□□□□ 0.16
VPS39-206ENST00000562662 TRDNQ13061 729 aa16.05■□□□□ 0.16
VPS39-206ENST00000562662 PICALMQ13492 652 aa16.05■□□□□ 0.16
VPS39-206ENST00000562662 Q6ZUG5 572 aa16.05■□□□□ 0.16
VPS39-206ENST00000562662 CYB5R4Q7L1T6 521 aa16.05■□□□□ 0.16
VPS39-206ENST00000562662 DPF2Q92785 391 aa16.05■□□□□ 0.16
VPS39-206ENST00000562662 AGXT2Q9BYV1 514 aa16.05■□□□□ 0.16
VPS39-206ENST00000562662 KRT23Q9C075 422 aa16.05■□□□□ 0.16
VPS39-206ENST00000562662 OSBPL5Q9H0X9 879 aaPredicted RBP16.05■□□□□ 0.16
VPS39-206ENST00000562662 TDRD3Q9H7E2 651 aaKnown RBP16.05■□□□□ 0.16
VPS39-206ENST00000562662 GJA3Q9Y6H8 435 aa16.05■□□□□ 0.16
VPS39-206ENST00000562662 PRC1O43663 620 aa16.04■□□□□ 0.16
VPS39-206ENST00000562662 ORC4O43929 436 aa16.04■□□□□ 0.16
VPS39-206ENST00000562662 POLR3DP05423 398 aaPredicted RBP16.04■□□□□ 0.16
VPS39-206ENST00000562662 MCM5P33992 734 aa16.04■□□□□ 0.16
VPS39-206ENST00000562662 PLCD1P51178 756 aa16.04■□□□□ 0.16
VPS39-206ENST00000562662 DLGAP5Q15398 846 aa16.04■□□□□ 0.16
VPS39-206ENST00000562662 SLC4A8Q2Y0W8 1093 aa16.04■□□□□ 0.16
VPS39-206ENST00000562662 NOL8Q76FK4 1167 aaKnown RBP16.04■□□□□ 0.16
VPS39-206ENST00000562662 CHST3Q7LGC8 479 aa16.04■□□□□ 0.16
VPS39-206ENST00000562662 AMOTL1Q8IY63 956 aa16.04■□□□□ 0.16
VPS39-206ENST00000562662 STK11IPQ8N1F8 1099 aa16.04■□□□□ 0.16
VPS39-206ENST00000562662 FBXL16Q8N461 479 aa16.04■□□□□ 0.16
VPS39-206ENST00000562662 TMX3Q96JJ7 454 aa16.04■□□□□ 0.16
VPS39-206ENST00000562662 LRRC2Q9BYS8 371 aa16.04■□□□□ 0.16
VPS39-206ENST00000562662 MYOZ2Q9NPC6 264 aa16.04■□□□□ 0.16
VPS39-206ENST00000562662 RNF181Q9P0P0 153 aa16.04■□□□□ 0.16
VPS39-206ENST00000562662 DAXXQ9UER7 740 aaPredicted RBP16.04■□□□□ 0.16
VPS39-206ENST00000562662 FAM198AQ9UFP1 575 aa16.04■□□□□ 0.16
VPS39-206ENST00000562662 COL2A1P02458 1487 aaPredicted RBP16.03■□□□□ 0.16
VPS39-206ENST00000562662 SLC3A2P08195 630 aaKnown RBP16.03■□□□□ 0.16
VPS39-206ENST00000562662 CACNB3P54284 484 aa16.03■□□□□ 0.16
VPS39-206ENST00000562662 ANKRD1Q15327 319 aa16.03■□□□□ 0.16
VPS39-206ENST00000562662 GPR162Q16538 588 aa16.03■□□□□ 0.16
VPS39-206ENST00000562662 SPDYE2Q495Y8 402 aa16.03■□□□□ 0.16
VPS39-206ENST00000562662 LIMCH1Q9UPQ0 1083 aa16.03■□□□□ 0.16
VPS39-206ENST00000562662 KDM4AO75164 1064 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms