RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 TACC3Q9Y6A5 838 aa5.7□□□□□ -1.5
VPS35-203ENST00000562420 DRD2P14416 443 aa5.69□□□□□ -1.5
VPS35-203ENST00000562420 USP11P51784 963 aa5.69□□□□□ -1.5
VPS35-203ENST00000562420 RING1Q06587 406 aa5.69□□□□□ -1.5
VPS35-203ENST00000562420 LRP8Q14114 963 aa5.69□□□□□ -1.5
VPS35-203ENST00000562420 MAP7Q14244 749 aa5.69□□□□□ -1.5
VPS35-203ENST00000562420 SGO2Q562F6 1265 aa5.69□□□□□ -1.5
VPS35-203ENST00000562420 LDLRAD1Q5T700 205 aa5.69□□□□□ -1.5
VPS35-203ENST00000562420 DIEXFQ68CQ4 756 aaKnown RBP5.69□□□□□ -1.5
VPS35-203ENST00000562420 BEND4Q6ZU67 534 aa5.69□□□□□ -1.5
VPS35-203ENST00000562420 PHC3Q8NDX5 983 aa5.69□□□□□ -1.5
VPS35-203ENST00000562420 GRIN3AQ8TCU5 1115 aa5.69□□□□□ -1.5
VPS35-203ENST00000562420 WDR89Q96FK6 387 aaPredicted RBP5.69□□□□□ -1.5
VPS35-203ENST00000562420 ACSBG1Q96GR2 724 aa5.69□□□□□ -1.5
VPS35-203ENST00000562420 RHOVQ96L33 236 aa5.69□□□□□ -1.5
VPS35-203ENST00000562420 FANCD2OSQ96PS1 177 aa5.69□□□□□ -1.5
VPS35-203ENST00000562420 C7orf69Q9H7B7 122 aa5.69□□□□□ -1.5
VPS35-203ENST00000562420 KCNQ5Q9NR82 932 aa5.69□□□□□ -1.5
VPS35-203ENST00000562420 PPP1R9AQ9ULJ8 1098 aa5.69□□□□□ -1.5
VPS35-203ENST00000562420 SNCAIPQ9Y6H5 919 aa5.69□□□□□ -1.5
VPS35-203ENST00000562420 RECKO95980 971 aa5.68□□□□□ -1.5
VPS35-203ENST00000562420 FSTP19883 344 aa5.68□□□□□ -1.5
VPS35-203ENST00000562420 ASPAP45381 313 aa5.68□□□□□ -1.5
VPS35-203ENST00000562420 LMNB2Q03252 620 aa5.68□□□□□ -1.5
VPS35-203ENST00000562420 RNF43Q68DV7 783 aa5.68□□□□□ -1.5
VPS35-203ENST00000562420 CDPF1Q6NVV7 123 aa5.68□□□□□ -1.5
VPS35-203ENST00000562420 PAOXQ6QHF9 649 aa5.68□□□□□ -1.5
VPS35-203ENST00000562420 HS2ST1Q7LGA3 356 aa5.68□□□□□ -1.5
VPS35-203ENST00000562420 DYMQ7RTS9 669 aa5.68□□□□□ -1.5
VPS35-203ENST00000562420 RNF214Q8ND24 703 aa5.68□□□□□ -1.5
VPS35-203ENST00000562420 TMEM74Q96NL1 305 aa5.68□□□□□ -1.5
VPS35-203ENST00000562420 DBNDD2Q9BQY9 259 aa5.68□□□□□ -1.5
VPS35-203ENST00000562420 ZC3H12CQ9C0D7 883 aaKnown RBP5.68□□□□□ -1.5
VPS35-203ENST00000562420 MIR1-1HGQ9H1L0 117 aa5.68□□□□□ -1.5
VPS35-203ENST00000562420 DISC1Q9NRI5 854 aa5.68□□□□□ -1.5
VPS35-203ENST00000562420 FAM105AQ9NUU6 356 aa5.68□□□□□ -1.5
VPS35-203ENST00000562420 FAM95CA0A1B0GW59 222 aa5.67□□□□□ -1.5
VPS35-203ENST00000562420 FANCGO15287 622 aa5.67□□□□□ -1.5
VPS35-203ENST00000562420 IGLV1-40P01703 118 aa5.67□□□□□ -1.5
VPS35-203ENST00000562420 TFE3P19532 575 aaPredicted RBP5.67□□□□□ -1.5
VPS35-203ENST00000562420 LMNB1P20700 586 aa5.67□□□□□ -1.5
VPS35-203ENST00000562420 NFIAQ12857 509 aa5.67□□□□□ -1.5
VPS35-203ENST00000562420 SEZ6L2Q6UXD5 910 aa5.67□□□□□ -1.5
VPS35-203ENST00000562420 SEMA6CQ9H3T2 930 aa5.67□□□□□ -1.5
VPS35-203ENST00000562420 PIDD1Q9HB75 910 aa5.67□□□□□ -1.5
VPS35-203ENST00000562420 PODXL2Q9NZ53 605 aa5.67□□□□□ -1.5
VPS35-203ENST00000562420 TSNAXIP1Q2TAA8 658 aa5.66□□□□□ -1.5
VPS35-203ENST00000562420 CYFIP1Q7L576 1253 aa5.66□□□□□ -1.5
VPS35-203ENST00000562420 HDXQ7Z353 690 aa5.66□□□□□ -1.5
VPS35-203ENST00000562420 RELL1Q8IUW5 271 aa5.66□□□□□ -1.5
VPS35-203ENST00000562420 KCT2Q8NC54 265 aa5.66□□□□□ -1.5
VPS35-203ENST00000562420 FBLIM1Q8WUP2 373 aa5.66□□□□□ -1.5
VPS35-203ENST00000562420 BACH2Q9BYV9 841 aa5.66□□□□□ -1.5
VPS35-203ENST00000562420 KCNF1Q9H3M0 494 aa5.66□□□□□ -1.5
VPS35-203ENST00000562420 PCDHA4Q9UN74 947 aa5.66□□□□□ -1.5
VPS35-203ENST00000562420 HMX2A2RU54 273 aa5.65□□□□□ -1.5
VPS35-203ENST00000562420 SCAMP3O14828 347 aaKnown RBP5.65□□□□□ -1.5
VPS35-203ENST00000562420 RXRBP28702 533 aa5.65□□□□□ -1.5
VPS35-203ENST00000562420 NTF4P34130 210 aa5.65□□□□□ -1.5
VPS35-203ENST00000562420 ZNF76P36508 570 aa5.65□□□□□ -1.5
VPS35-203ENST00000562420 CAP2P40123 477 aa5.65□□□□□ -1.5
VPS35-203ENST00000562420 RPL6Q02878 288 aaKnown RBP5.65□□□□□ -1.5
VPS35-203ENST00000562420 TTLL4Q14679 1199 aa5.65□□□□□ -1.5
VPS35-203ENST00000562420 ZBTB37Q5TC79 503 aa5.65□□□□□ -1.5
VPS35-203ENST00000562420 MPRIPQ6WCQ1 1025 aa5.65□□□□□ -1.5
VPS35-203ENST00000562420 SMYD4Q8IYR2 804 aaPredicted RBP5.65□□□□□ -1.5
VPS35-203ENST00000562420 TMEM87AQ8NBN3 555 aa5.65□□□□□ -1.5
VPS35-203ENST00000562420 GIMAP7Q8NHV1 300 aa5.65□□□□□ -1.5
VPS35-203ENST00000562420 MRRFQ96E11 262 aaKnown RBP5.65□□□□□ -1.5
VPS35-203ENST00000562420 METTL22Q9BUU2 404 aaPredicted RBP5.65□□□□□ -1.5
VPS35-203ENST00000562420 PRKAG2Q9UGJ0 569 aa5.65□□□□□ -1.5
VPS35-203ENST00000562420 ROBO2Q9HCK4 1378 aa5.65□□□□□ -1.51
VPS35-203ENST00000562420 GFRA2O00451 464 aa5.64□□□□□ -1.51
VPS35-203ENST00000562420 CILPO75339 1184 aa5.64□□□□□ -1.51
VPS35-203ENST00000562420 NEFMP07197 916 aa5.64□□□□□ -1.51
VPS35-203ENST00000562420 RAB6AP20340 208 aa5.64□□□□□ -1.51
VPS35-203ENST00000562420 FANCCQ00597 558 aa5.64□□□□□ -1.51
VPS35-203ENST00000562420 PTPN11Q06124 597 aaPredicted RBP5.64□□□□□ -1.51
VPS35-203ENST00000562420 CAMK2GQ13555 558 aaPredicted RBP5.64□□□□□ -1.51
VPS35-203ENST00000562420 MAP3K11Q16584 847 aa5.64□□□□□ -1.51
VPS35-203ENST00000562420 LRFN4Q6PJG9 635 aa5.64□□□□□ -1.51
VPS35-203ENST00000562420 ZAR1Q86SH2 424 aa5.64□□□□□ -1.51
VPS35-203ENST00000562420 KRTAP19-1Q8IUB9 90 aa5.64□□□□□ -1.51
VPS35-203ENST00000562420 GATAD2BQ8WXI9 593 aa5.64□□□□□ -1.51
VPS35-203ENST00000562420 GATA6Q92908 595 aa5.64□□□□□ -1.51
VPS35-203ENST00000562420 ELMO3Q96BJ8 720 aa5.64□□□□□ -1.51
VPS35-203ENST00000562420 LRRC3Q9BY71 257 aa5.64□□□□□ -1.51
VPS35-203ENST00000562420 KRTAP4-7Q9BYR0 210 aa5.64□□□□□ -1.51
VPS35-203ENST00000562420 KBTBD4Q9NVX7 518 aa5.64□□□□□ -1.51
VPS35-203ENST00000562420 KIAA1522Q9P206 1035 aaPredicted RBP5.64□□□□□ -1.51
VPS35-203ENST00000562420 PCOLCE2Q9UKZ9 415 aa5.64□□□□□ -1.51
VPS35-203ENST00000562420 RNF112Q9ULX5 631 aa5.64□□□□□ -1.51
VPS35-203ENST00000562420 TLR6Q9Y2C9 796 aa5.64□□□□□ -1.51
VPS35-203ENST00000562420 PCDHB5Q9Y5E4 795 aa5.64□□□□□ -1.51
VPS35-203ENST00000562420 FAM221AA4D161 298 aa5.63□□□□□ -1.51
VPS35-203ENST00000562420 NFICP08651 508 aa5.63□□□□□ -1.51
VPS35-203ENST00000562420 GARTP22102 1010 aa5.63□□□□□ -1.51
VPS35-203ENST00000562420 GBP2P32456 591 aaPredicted RBP5.63□□□□□ -1.51
VPS35-203ENST00000562420 CYP27A1Q02318 531 aa5.63□□□□□ -1.51
VPS35-203ENST00000562420 SEPT6Q14141 434 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms