RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 ZDHHC9Q9Y397 364 aa8.77□□□□□ -1.01
VPS39-204ENST00000561818 TNRC6CQ9HCJ0 1690 aaKnown RBP8.77□□□□□ -1.01
VPS39-204ENST00000561818 MYO3BQ8WXR4 1341 aa8.77□□□□□ -1.01
VPS39-204ENST00000561818 IRS2Q9Y4H2 1338 aa8.77□□□□□ -1.01
VPS39-204ENST00000561818 FSD2A1L4K1 749 aa8.76□□□□□ -1.01
VPS39-204ENST00000561818 G3V3G9 751 aa8.76□□□□□ -1.01
VPS39-204ENST00000561818 H0YIN7 160 aa8.76□□□□□ -1.01
VPS39-204ENST00000561818 FOXP2O15409 715 aa8.76□□□□□ -1.01
VPS39-204ENST00000561818 PRPF40AO75400 957 aaKnown RBP8.76□□□□□ -1.01
VPS39-204ENST00000561818 BMP15O95972 392 aa8.76□□□□□ -1.01
VPS39-204ENST00000561818 HDLBPQ00341 1268 aaKnown RBP8.76□□□□□ -1.01
VPS39-204ENST00000561818 MECOMQ03112 1051 aa8.76□□□□□ -1.01
VPS39-204ENST00000561818 FAM182BQ5T319 152 aa8.76□□□□□ -1.01
VPS39-204ENST00000561818 DCAF8Q5TAQ9 597 aa8.76□□□□□ -1.01
VPS39-204ENST00000561818 APOA5Q6Q788 366 aa8.76□□□□□ -1.01
VPS39-204ENST00000561818 PTF1AQ7RTS3 328 aa8.76□□□□□ -1.01
VPS39-204ENST00000561818 PODNQ7Z5L7 613 aa8.76□□□□□ -1.01
VPS39-204ENST00000561818 REM2Q8IYK8 340 aaPredicted RBP8.76□□□□□ -1.01
VPS39-204ENST00000561818 C8orf76Q96K31 380 aa8.76□□□□□ -1.01
VPS39-204ENST00000561818 ARMT1Q9H993 441 aa8.76□□□□□ -1.01
VPS39-204ENST00000561818 BRMS1Q9HCU9 246 aa8.76□□□□□ -1.01
VPS39-204ENST00000561818 NAP1L2Q9ULW6 460 aaPredicted RBP8.76□□□□□ -1.01
VPS39-204ENST00000561818 NSFL1CQ9UNZ2 370 aaKnown RBP8.76□□□□□ -1.01
VPS39-204ENST00000561818 C10orf71Q711Q0 1435 aa8.76□□□□□ -1.01
VPS39-204ENST00000561818 CACNA1SQ13698 1873 aa8.76□□□□□ -1.01
VPS39-204ENST00000561818 MROH7-TTC4A0A0A0MT08 1334 aa8.76□□□□□ -1.01
VPS39-204ENST00000561818 CHD4Q14839 1912 aa8.76□□□□□ -1.01
VPS39-204ENST00000561818 GOLGA8AA7E2F4 631 aa8.75□□□□□ -1.01
VPS39-204ENST00000561818 LARGE1O95461 756 aa8.75□□□□□ -1.01
VPS39-204ENST00000561818 YEATS4O95619 227 aa8.75□□□□□ -1.01
VPS39-204ENST00000561818 CPA1P15085 419 aa8.75□□□□□ -1.01
VPS39-204ENST00000561818 IFNAR1P17181 557 aa8.75□□□□□ -1.01
VPS39-204ENST00000561818 IARSP41252 1262 aaKnown RBP8.75□□□□□ -1.01
VPS39-204ENST00000561818 USP5P45974 858 aa8.75□□□□□ -1.01
VPS39-204ENST00000561818 KCNQ4P56696 695 aa8.75□□□□□ -1.01
VPS39-204ENST00000561818 HAND2P61296 217 aa8.75□□□□□ -1.01
VPS39-204ENST00000561818 APOBRQ0VD83 1088 aa8.75□□□□□ -1.01
VPS39-204ENST00000561818 DPP8Q6V1X1 898 aaPredicted RBP8.75□□□□□ -1.01
VPS39-204ENST00000561818 C3orf67Q6ZVT6 689 aa8.75□□□□□ -1.01
VPS39-204ENST00000561818 DGKHQ86XP1 1220 aa8.75□□□□□ -1.01
VPS39-204ENST00000561818 LCORLQ8N3X6 602 aa8.75□□□□□ -1.01
VPS39-204ENST00000561818 MPNDQ8N594 471 aa8.75□□□□□ -1.01
VPS39-204ENST00000561818 TBC1D16Q8TBP0 767 aa8.75□□□□□ -1.01
VPS39-204ENST00000561818 SPATA32Q96LK8 384 aa8.75□□□□□ -1.01
VPS39-204ENST00000561818 LZTS2Q9BRK4 669 aa8.75□□□□□ -1.01
VPS39-204ENST00000561818 RNF26Q9BY78 433 aaPredicted RBP8.75□□□□□ -1.01
VPS39-204ENST00000561818 EPB41L4AQ9HCS5 686 aaPredicted RBP8.75□□□□□ -1.01
VPS39-204ENST00000561818 CD209Q9NNX6 404 aa8.75□□□□□ -1.01
VPS39-204ENST00000561818 TOMM22Q9NS69 142 aa8.75□□□□□ -1.01
VPS39-204ENST00000561818 ORC3Q9UBD5 711 aaPredicted RBP8.75□□□□□ -1.01
VPS39-204ENST00000561818 CEP131Q9UPN4 1083 aa8.75□□□□□ -1.01
VPS39-204ENST00000561818 MORC2Q9Y6X9 1032 aaPredicted RBP8.75□□□□□ -1.01
VPS39-204ENST00000561818 LAMB1P07942 1786 aa8.74□□□□□ -1.01
VPS39-204ENST00000561818 C6orf229H3BNL8 230 aa8.74□□□□□ -1.01
VPS39-204ENST00000561818 KDM4AO75164 1064 aa8.74□□□□□ -1.01
VPS39-204ENST00000561818 DEXIO95424 95 aa8.74□□□□□ -1.01
VPS39-204ENST00000561818 MMP10P09238 476 aa8.74□□□□□ -1.01
VPS39-204ENST00000561818 DDR1Q08345 913 aa8.74□□□□□ -1.01
VPS39-204ENST00000561818 SSRP1Q08945 709 aaKnown RBP8.74□□□□□ -1.01
VPS39-204ENST00000561818 CHAF1AQ13111 956 aaPredicted RBP8.74□□□□□ -1.01
VPS39-204ENST00000561818 STK3Q13188 491 aa8.74□□□□□ -1.01
VPS39-204ENST00000561818 GNL2Q13823 731 aaKnown RBP8.74□□□□□ -1.01
VPS39-204ENST00000561818 PKP1Q13835 747 aa8.74□□□□□ -1.01
VPS39-204ENST00000561818 SLC15A2Q16348 729 aa8.74□□□□□ -1.01
VPS39-204ENST00000561818 RTN1Q16799 776 aa8.74□□□□□ -1.01
VPS39-204ENST00000561818 IFIT1BQ5T764 474 aaKnown RBP8.74□□□□□ -1.01
VPS39-204ENST00000561818 TTLL5Q6EMB2 1281 aa8.74□□□□□ -1.01
VPS39-204ENST00000561818 CAVIN1Q6NZI2 390 aaKnown RBP8.74□□□□□ -1.01
VPS39-204ENST00000561818 TTC6Q86TZ1 520 aa8.74□□□□□ -1.01
VPS39-204ENST00000561818 TBC1D10CQ8IV04 446 aa8.74□□□□□ -1.01
VPS39-204ENST00000561818 TEX2Q8IWB9 1127 aa8.74□□□□□ -1.01
VPS39-204ENST00000561818 NECAB1Q8N987 351 aa8.74□□□□□ -1.01
VPS39-204ENST00000561818 FBXO18Q8NFZ0 1043 aa8.74□□□□□ -1.01
VPS39-204ENST00000561818 CTCFLQ8NI51 663 aaPredicted RBP8.74□□□□□ -1.01
VPS39-204ENST00000561818 IGDCC4Q8TDY8 1250 aa8.74□□□□□ -1.01
VPS39-204ENST00000561818 LY9Q9HBG7 655 aa8.74□□□□□ -1.01
VPS39-204ENST00000561818 TCP11L1Q9NUJ3 509 aa8.74□□□□□ -1.01
VPS39-204ENST00000561818 SWAP70Q9UH65 585 aa8.74□□□□□ -1.01
VPS39-204ENST00000561818 COL1A1P02452 1464 aaPredicted RBP8.74□□□□□ -1.01
VPS39-204ENST00000561818 GAKO14976 1311 aa8.74□□□□□ -1.01
VPS39-204ENST00000561818 GPR75-ASB3A0A0A6YYF3 556 aa8.73□□□□□ -1.01
VPS39-204ENST00000561818 B4E1Z4 1266 aa8.73□□□□□ -1.01
VPS39-204ENST00000561818 hCG_1984214I3L0E3 225 aa8.73□□□□□ -1.01
VPS39-204ENST00000561818 GPSM2P81274 684 aa8.73□□□□□ -1.01
VPS39-204ENST00000561818 UVSSAQ2YD98 709 aa8.73□□□□□ -1.01
VPS39-204ENST00000561818 ZSCAN23Q3MJ62 389 aa8.73□□□□□ -1.01
VPS39-204ENST00000561818 MFSD14BQ5SR56 506 aa8.73□□□□□ -1.01
VPS39-204ENST00000561818 GALNT17Q6IS24 598 aa8.73□□□□□ -1.01
VPS39-204ENST00000561818 LRSAM1Q6UWE0 723 aa8.73□□□□□ -1.01
VPS39-204ENST00000561818 CDC37L1Q7L3B6 337 aa8.73□□□□□ -1.01
VPS39-204ENST00000561818 COL23A1Q86Y22 540 aaPredicted RBP8.73□□□□□ -1.01
VPS39-204ENST00000561818 PROM2Q8N271 834 aa8.73□□□□□ -1.01
VPS39-204ENST00000561818 ZNF713Q8N859 430 aaPredicted RBP8.73□□□□□ -1.01
VPS39-204ENST00000561818 MIGA1Q8NAN2 632 aa8.73□□□□□ -1.01
VPS39-204ENST00000561818 ZSCAN10Q96SZ4 725 aaPredicted RBP8.73□□□□□ -1.01
VPS39-204ENST00000561818 PYM1Q9BRP8 204 aaKnown RBP8.73□□□□□ -1.01
VPS39-204ENST00000561818 RTFDC1Q9BY42 306 aaPredicted RBP8.73□□□□□ -1.01
VPS39-204ENST00000561818 GRPEL1Q9HAV7 217 aa8.73□□□□□ -1.01
VPS39-204ENST00000561818 DCP1AQ9NPI6 582 aaPredicted RBP8.73□□□□□ -1.01
VPS39-204ENST00000561818 POLR3EQ9NVU0 708 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms