RNA–Protein interactions for RNA: ENST00000560959.5

TPM1-226, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 925 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-226ENST00000560959 ATRNL1Q5VV63 1379 aa23.18■■□□□ 1.3
TPM1-226ENST00000560959 EVI5O60447 810 aa23.18■■□□□ 1.3
TPM1-226ENST00000560959 PRDX5P30044 214 aa23.18■■□□□ 1.3
TPM1-226ENST00000560959 RFX5P48382 616 aaPredicted RBP23.18■■□□□ 1.3
TPM1-226ENST00000560959 SLC17A8Q8NDX2 589 aa23.18■■□□□ 1.3
TPM1-226ENST00000560959 SEMA3EO15041 775 aa23.17■■□□□ 1.3
TPM1-226ENST00000560959 TFRCP02786 760 aaKnown RBP23.17■■□□□ 1.3
TPM1-226ENST00000560959 MRPL50Q8N5N7 158 aaKnown RBP23.17■■□□□ 1.3
TPM1-226ENST00000560959 PAK6Q9NQU5 681 aaPredicted RBP23.17■■□□□ 1.3
TPM1-226ENST00000560959 INHAP05111 366 aa23.16■■□□□ 1.3
TPM1-226ENST00000560959 ATG9AQ7Z3C6 839 aa23.16■■□□□ 1.3
TPM1-226ENST00000560959 ZFPM1Q8IX07 1006 aa23.16■■□□□ 1.3
TPM1-226ENST00000560959 CRISPLD2Q9H0B8 497 aa23.16■■□□□ 1.3
TPM1-226ENST00000560959 DENND2AQ9ULE3 1009 aa23.16■■□□□ 1.3
TPM1-226ENST00000560959 DLL1O00548 723 aa23.15■■□□□ 1.3
TPM1-226ENST00000560959 TNPO2O14787 897 aaKnown RBP23.15■■□□□ 1.3
TPM1-226ENST00000560959 CTNND1O60716 968 aaKnown RBP23.15■■□□□ 1.3
TPM1-226ENST00000560959 ZGPATQ8N5A5 531 aaKnown RBP23.14■■□□□ 1.29
TPM1-226ENST00000560959 FAM163AQ96GL9 167 aaPredicted RBP23.14■■□□□ 1.29
TPM1-226ENST00000560959 DEFB118Q96PH6 123 aa23.14■■□□□ 1.29
TPM1-226ENST00000560959 LAMA3Q16787 3333 aa23.13■■□□□ 1.29
TPM1-226ENST00000560959 CIAO1O76071 339 aa23.13■■□□□ 1.29
TPM1-226ENST00000560959 ELNP15502 786 aa23.13■■□□□ 1.29
TPM1-226ENST00000560959 BMP8BP34820 402 aa23.13■■□□□ 1.29
TPM1-226ENST00000560959 RGS3P49796 1198 aa23.13■■□□□ 1.29
TPM1-226ENST00000560959 GPR153Q6NV75 609 aa23.13■■□□□ 1.29
TPM1-226ENST00000560959 GADL1Q6ZQY3 521 aa23.13■■□□□ 1.29
TPM1-226ENST00000560959 SMCR8Q8TEV9 937 aaPredicted RBP23.13■■□□□ 1.29
TPM1-226ENST00000560959 COA7Q96BR5 231 aa23.13■■□□□ 1.29
TPM1-226ENST00000560959 CEP126Q9P2H0 1117 aa23.13■■□□□ 1.29
TPM1-226ENST00000560959 LRRFIP2Q9Y608 721 aaKnown RBP23.13■■□□□ 1.29
TPM1-226ENST00000560959 COL6A3P12111 3177 aa23.13■■□□□ 1.29
TPM1-226ENST00000560959 GAKO14976 1311 aa23.12■■□□□ 1.29
TPM1-226ENST00000560959 ATP2B3Q16720 1220 aa23.12■■□□□ 1.29
TPM1-226ENST00000560959 SLF2Q8IX21 1173 aa23.12■■□□□ 1.29
TPM1-226ENST00000560959 ANKLE1Q8NAG6 615 aa23.12■■□□□ 1.29
TPM1-226ENST00000560959 AGTPBP1Q9UPW5 1226 aa23.12■■□□□ 1.29
TPM1-226ENST00000560959 A0A0C4DFX4 3053 aa23.11■■□□□ 1.29
TPM1-226ENST00000560959 SH3BP5LQ7L8J4 393 aa23.11■■□□□ 1.29
TPM1-226ENST00000560959 NECAB2Q7Z6G3 386 aa23.11■■□□□ 1.29
TPM1-226ENST00000560959 STAP2Q9UGK3 403 aa23.11■■□□□ 1.29
TPM1-226ENST00000560959 MGAMO43451 1857 aa23.11■■□□□ 1.29
TPM1-226ENST00000560959 AK9Q5TCS8 1911 aa23.1■■□□□ 1.29
TPM1-226ENST00000560959 TBC1D12O60347 775 aa23.1■■□□□ 1.29
TPM1-226ENST00000560959 FAM110CQ1W6H9 321 aa23.1■■□□□ 1.29
TPM1-226ENST00000560959 PAWRQ96IZ0 340 aaKnown RBP23.1■■□□□ 1.29
TPM1-226ENST00000560959 PNMA3Q9UL41 463 aa23.1■■□□□ 1.29
TPM1-226ENST00000560959 RFX7Q2KHR2 1363 aa23.1■■□□□ 1.29
TPM1-226ENST00000560959 SOX1O00570 391 aaPredicted RBP23.09■■□□□ 1.29
TPM1-226ENST00000560959 ZSCAN29Q8IWY8 852 aaPredicted RBP23.09■■□□□ 1.29
TPM1-226ENST00000560959 GDF15Q99988 308 aa23.09■■□□□ 1.29
TPM1-226ENST00000560959 PDS5AQ29RF7 1337 aaKnown RBP23.08■■□□□ 1.29
TPM1-226ENST00000560959 ZNF521Q96K83 1311 aa23.08■■□□□ 1.29
TPM1-226ENST00000560959 DDTLA6NHG4 134 aaPredicted RBP23.08■■□□□ 1.29
TPM1-226ENST00000560959 NPM3O75607 178 aaKnown RBP23.08■■□□□ 1.29
TPM1-226ENST00000560959 ANKRD13CQ8N6S4 541 aa23.08■■□□□ 1.29
TPM1-226ENST00000560959 PROCA1Q8NCQ7 364 aaPredicted RBP23.08■■□□□ 1.29
TPM1-226ENST00000560959 TBC1D2Q9BYX2 928 aa23.08■■□□□ 1.29
TPM1-226ENST00000560959 TRIM75PA6NK02 468 aa23.07■■□□□ 1.28
TPM1-226ENST00000560959 ANP32CO43423 234 aa23.07■■□□□ 1.28
TPM1-226ENST00000560959 IL15P40933 162 aaPredicted RBP23.07■■□□□ 1.28
TPM1-226ENST00000560959 PHKA1P46020 1223 aa23.07■■□□□ 1.28
TPM1-226ENST00000560959 GCLCP48506 637 aaPredicted RBP23.07■■□□□ 1.28
TPM1-226ENST00000560959 LRCH3Q96II8 777 aa23.07■■□□□ 1.28
TPM1-226ENST00000560959 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.07■■□□□ 1.28
TPM1-226ENST00000560959 SPTY2D1Q68D10 685 aaPredicted RBP23.06■■□□□ 1.28
TPM1-226ENST00000560959 SSH1Q8WYL5 1049 aa23.06■■□□□ 1.28
TPM1-226ENST00000560959 MYH13Q9UKX3 1938 aa23.06■■□□□ 1.28
TPM1-226ENST00000560959 MAP4K4O95819 1239 aaPredicted RBP23.05■■□□□ 1.28
TPM1-226ENST00000560959 HMGCRP04035 888 aa23.05■■□□□ 1.28
TPM1-226ENST00000560959 MNX1P50219 401 aaPredicted RBP23.05■■□□□ 1.28
TPM1-226ENST00000560959 PABPC4Q13310 644 aaKnown RBP eCLIP23.05■■□□□ 1.28
TPM1-226ENST00000560959 CCDC102BQ68D86 513 aa23.05■■□□□ 1.28
TPM1-226ENST00000560959 DZIP1Q86YF9 867 aaKnown RBP23.05■■□□□ 1.28
TPM1-226ENST00000560959 OSBPL5Q9H0X9 879 aaPredicted RBP23.05■■□□□ 1.28
TPM1-226ENST00000560959 DDX4Q9NQI0 724 aaKnown RBP23.05■■□□□ 1.28
TPM1-226ENST00000560959 HDAC5Q9UQL6 1122 aa23.05■■□□□ 1.28
TPM1-226ENST00000560959 RPTORQ8N122 1335 aa23.05■■□□□ 1.28
TPM1-226ENST00000560959 NBPF3Q9H094 633 aa23.04■■□□□ 1.28
TPM1-226ENST00000560959 SIL1Q9H173 461 aa23.04■■□□□ 1.28
TPM1-226ENST00000560959 GJD2Q9UKL4 321 aa23.04■■□□□ 1.28
TPM1-226ENST00000560959 GPR75-ASB3A0A0A6YYF3 556 aa23.03■■□□□ 1.28
TPM1-226ENST00000560959 BTDP43251 543 aa23.03■■□□□ 1.28
TPM1-226ENST00000560959 LRIT3Q3SXY7 679 aa23.03■■□□□ 1.28
TPM1-226ENST00000560959 TREML2Q5T2D2 321 aa23.03■■□□□ 1.28
TPM1-226ENST00000560959 HMX1Q9NP08 348 aaPredicted RBP23.03■■□□□ 1.28
TPM1-226ENST00000560959 TAOK2Q9UL54 1235 aa23.03■■□□□ 1.28
TPM1-226ENST00000560959 UBTFL1P0CB47 393 aaPredicted RBP23.02■■□□□ 1.28
TPM1-226ENST00000560959 ALDH1L2Q3SY69 923 aa23.02■■□□□ 1.28
TPM1-226ENST00000560959 ZNF280CQ8ND82 737 aa23.02■■□□□ 1.28
TPM1-226ENST00000560959 DIS3LQ8TF46 1054 aaKnown RBP23.02■■□□□ 1.28
TPM1-226ENST00000560959 COPRSQ9NQ92 184 aa23.02■■□□□ 1.28
TPM1-226ENST00000560959 ABCF2Q9UG63 623 aa23.02■■□□□ 1.28
TPM1-226ENST00000560959 DOCK2Q92608 1830 aa23.02■■□□□ 1.28
TPM1-226ENST00000560959 RHBDL3P58872 404 aa23.01■■□□□ 1.27
TPM1-226ENST00000560959 PICALMQ13492 652 aa23.01■■□□□ 1.27
TPM1-226ENST00000560959 RASGRF1Q13972 1273 aa23.01■■□□□ 1.27
TPM1-226ENST00000560959 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.01■■□□□ 1.27
TPM1-226ENST00000560959 MROH7-TTC4A0A0A0MT08 1334 aa23.01■■□□□ 1.27
TPM1-226ENST00000560959 E9PSI1 815 aa23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms