RNA–Protein interactions for RNA: ENST00000560131.1

TPM1-222, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 537 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-222ENST00000560131 GSX2Q9BZM3 304 aa6.52□□□□□ -1.37
TPM1-222ENST00000560131 RUBCNLQ9H714 662 aa6.52□□□□□ -1.37
TPM1-222ENST00000560131 ABCB6Q9NP58 842 aa6.52□□□□□ -1.37
TPM1-222ENST00000560131 DYRK1BQ9Y463 629 aa6.52□□□□□ -1.37
TPM1-222ENST00000560131 NPC1L1Q9UHC9 1359 aa6.52□□□□□ -1.37
TPM1-222ENST00000560131 KIAA0586Q9BVV6 1533 aa6.51□□□□□ -1.37
TPM1-222ENST00000560131 KLF4O43474 513 aa6.51□□□□□ -1.37
TPM1-222ENST00000560131 PDE3AQ14432 1141 aa6.51□□□□□ -1.37
TPM1-222ENST00000560131 GRIN2CQ14957 1233 aa6.51□□□□□ -1.37
TPM1-222ENST00000560131 MAP3K11Q16584 847 aa6.51□□□□□ -1.37
TPM1-222ENST00000560131 DUSP27Q5VZP5 1158 aa6.51□□□□□ -1.37
TPM1-222ENST00000560131 CCNJLQ8IV13 435 aa6.51□□□□□ -1.37
TPM1-222ENST00000560131 PHC3Q8NDX5 983 aa6.51□□□□□ -1.37
TPM1-222ENST00000560131 RHOVQ96L33 236 aa6.51□□□□□ -1.37
TPM1-222ENST00000560131 TRERF1Q96PN7 1200 aa6.51□□□□□ -1.37
TPM1-222ENST00000560131 TCF12Q99081 682 aa6.51□□□□□ -1.37
TPM1-222ENST00000560131 CEP44Q9C0F1 390 aa6.51□□□□□ -1.37
TPM1-222ENST00000560131 GPAMQ9HCL2 828 aa6.51□□□□□ -1.37
TPM1-222ENST00000560131 MRVI1Q9Y6F6 885 aa6.51□□□□□ -1.37
TPM1-222ENST00000560131 MRPL42Q9Y6G3 142 aaKnown RBP6.51□□□□□ -1.37
TPM1-222ENST00000560131 IBTKQ9P2D0 1353 aaPredicted RBP6.51□□□□□ -1.37
TPM1-222ENST00000560131 PIK3C2GO75747 1445 aa6.5□□□□□ -1.37
TPM1-222ENST00000560131 ARHGAP31Q2M1Z3 1444 aa6.5□□□□□ -1.37
TPM1-222ENST00000560131 NCOA3Q9Y6Q9 1424 aa6.5□□□□□ -1.37
TPM1-222ENST00000560131 NKTRP30414 1462 aaKnown RBP6.5□□□□□ -1.37
TPM1-222ENST00000560131 RAD54L2Q9Y4B4 1467 aa6.5□□□□□ -1.37
TPM1-222ENST00000560131 U2SURPO15042 1029 aaKnown RBP6.5□□□□□ -1.37
TPM1-222ENST00000560131 PF4P02776 101 aa6.5□□□□□ -1.37
TPM1-222ENST00000560131 MX2P20592 715 aa6.5□□□□□ -1.37
TPM1-222ENST00000560131 GARTP22102 1010 aa6.5□□□□□ -1.37
TPM1-222ENST00000560131 MCM4P33991 863 aa6.5□□□□□ -1.37
TPM1-222ENST00000560131 LMNB2Q03252 620 aa6.5□□□□□ -1.37
TPM1-222ENST00000560131 SFSWAPQ12872 951 aaKnown RBP6.5□□□□□ -1.37
TPM1-222ENST00000560131 RAB33AQ14088 237 aa6.5□□□□□ -1.37
TPM1-222ENST00000560131 DBN1Q16643 649 aa6.5□□□□□ -1.37
TPM1-222ENST00000560131 HS1BP3Q53T59 392 aa6.5□□□□□ -1.37
TPM1-222ENST00000560131 EFHC2Q5JST6 749 aa6.5□□□□□ -1.37
TPM1-222ENST00000560131 KRT25Q7Z3Z0 450 aa6.5□□□□□ -1.37
TPM1-222ENST00000560131 CD163Q86VB7 1156 aa6.5□□□□□ -1.37
TPM1-222ENST00000560131 CPLX3Q8WVH0 158 aa6.5□□□□□ -1.37
TPM1-222ENST00000560131 TRIM55Q9BYV6 548 aa6.5□□□□□ -1.37
TPM1-222ENST00000560131 RRAGCQ9HB90 399 aa6.5□□□□□ -1.37
TPM1-222ENST00000560131 SHROOM2Q13796 1616 aa6.5□□□□□ -1.37
TPM1-222ENST00000560131 RNF17Q9BXT8 1623 aaKnown RBP6.5□□□□□ -1.37
TPM1-222ENST00000560131 FBXO24O75426 580 aa6.49□□□□□ -1.37
TPM1-222ENST00000560131 KIF4AO95239 1232 aa6.49□□□□□ -1.37
TPM1-222ENST00000560131 RARAP10276 462 aa6.49□□□□□ -1.37
TPM1-222ENST00000560131 LIG3P49916 1009 aa6.49□□□□□ -1.37
TPM1-222ENST00000560131 FAM160A1Q05DH4 1040 aa6.49□□□□□ -1.37
TPM1-222ENST00000560131 CAMK2GQ13555 558 aaPredicted RBP6.49□□□□□ -1.37
TPM1-222ENST00000560131 LBRQ14739 615 aaKnown RBP6.49□□□□□ -1.37
TPM1-222ENST00000560131 TPTE2Q6XPS3 522 aa6.49□□□□□ -1.37
TPM1-222ENST00000560131 LRP10Q7Z4F1 713 aa6.49□□□□□ -1.37
TPM1-222ENST00000560131 NCAPG2Q86XI2 1143 aa6.49□□□□□ -1.37
TPM1-222ENST00000560131 NKD1Q969G9 470 aa6.49□□□□□ -1.37
TPM1-222ENST00000560131 GTPBP3Q969Y2 492 aaKnown RBP6.49□□□□□ -1.37
TPM1-222ENST00000560131 TBC1D32Q96NH3 1257 aa6.49□□□□□ -1.37
TPM1-222ENST00000560131 SRPK1Q96SB4 655 aaKnown RBP6.49□□□□□ -1.37
TPM1-222ENST00000560131 OSMRQ99650 979 aa6.49□□□□□ -1.37
TPM1-222ENST00000560131 CARD11Q9BXL7 1154 aa6.49□□□□□ -1.37
TPM1-222ENST00000560131 MYH16Q9H6N6 1097 aa6.49□□□□□ -1.37
TPM1-222ENST00000560131 EFCC1Q9HA90 598 aa6.49□□□□□ -1.37
TPM1-222ENST00000560131 CHMP5Q9NZZ3 219 aa6.49□□□□□ -1.37
TPM1-222ENST00000560131 TLR6Q9Y2C9 796 aa6.49□□□□□ -1.37
TPM1-222ENST00000560131 R3HCC1Q9Y3T6 440 aaKnown RBP6.49□□□□□ -1.37
TPM1-222ENST00000560131 PRAG1Q86YV5 1406 aa6.49□□□□□ -1.37
TPM1-222ENST00000560131 SYNMO15061 1565 aa6.48□□□□□ -1.37
TPM1-222ENST00000560131 ROBO2Q9HCK4 1378 aa6.48□□□□□ -1.37
TPM1-222ENST00000560131 H7C1W4 665 aa6.48□□□□□ -1.37
TPM1-222ENST00000560131 PSAPP07602 524 aa6.48□□□□□ -1.37
TPM1-222ENST00000560131 FAM157BP0CG42 384 aa6.48□□□□□ -1.37
TPM1-222ENST00000560131 SOX18P35713 384 aa6.48□□□□□ -1.37
TPM1-222ENST00000560131 SLFN5Q08AF3 891 aa6.48□□□□□ -1.37
TPM1-222ENST00000560131 HYAL2Q12891 473 aa6.48□□□□□ -1.37
TPM1-222ENST00000560131 DOC2BQ14184 412 aa6.48□□□□□ -1.37
TPM1-222ENST00000560131 SKOR2Q2VWA4 1001 aaPredicted RBP6.48□□□□□ -1.37
TPM1-222ENST00000560131 SNAP47Q5SQN1 464 aa6.48□□□□□ -1.37
TPM1-222ENST00000560131 PCNX4Q63HM2 1172 aa6.48□□□□□ -1.37
TPM1-222ENST00000560131 FIGNL1Q6PIW4 674 aa6.48□□□□□ -1.37
TPM1-222ENST00000560131 AGMOQ6ZNB7 445 aa6.48□□□□□ -1.37
TPM1-222ENST00000560131 RIPOR1Q6ZS17 1223 aa6.48□□□□□ -1.37
TPM1-222ENST00000560131 SLITRK4Q8IW52 837 aa6.48□□□□□ -1.37
TPM1-222ENST00000560131 GOLM1Q8NBJ4 401 aa6.48□□□□□ -1.37
TPM1-222ENST00000560131 PPP1R9BQ96SB3 815 aa6.48□□□□□ -1.37
TPM1-222ENST00000560131 GAS2L1Q99501 681 aaPredicted RBP6.48□□□□□ -1.37
TPM1-222ENST00000560131 ZKSCAN3Q9BRR0 538 aa6.48□□□□□ -1.37
TPM1-222ENST00000560131 SRRTQ9BXP5 876 aaKnown RBP6.48□□□□□ -1.37
TPM1-222ENST00000560131 UPF2Q9HAU5 1272 aaKnown RBP6.48□□□□□ -1.37
TPM1-222ENST00000560131 GRPEL1Q9HAV7 217 aa6.48□□□□□ -1.37
TPM1-222ENST00000560131 ZFP64Q9NPA5 681 aa6.48□□□□□ -1.37
TPM1-222ENST00000560131 TLR7Q9NYK1 1049 aaKnown RBP6.48□□□□□ -1.37
TPM1-222ENST00000560131 UBP1Q9NZI7 540 aa6.48□□□□□ -1.37
TPM1-222ENST00000560131 ZFATQ9P243 1243 aa6.48□□□□□ -1.37
TPM1-222ENST00000560131 PRKAG3Q9UGI9 489 aa6.48□□□□□ -1.37
TPM1-222ENST00000560131 PRDM4Q9UKN5 801 aa6.48□□□□□ -1.37
TPM1-222ENST00000560131 ARHGEF5Q12774 1597 aa6.48□□□□□ -1.37
TPM1-222ENST00000560131 CCDC141Q6ZP82 1450 aa6.47□□□□□ -1.37
TPM1-222ENST00000560131 CDK13Q14004 1512 aaKnown RBP6.47□□□□□ -1.37
TPM1-222ENST00000560131 ST20-MTHFSA0A0A6YYL1 179 aa6.47□□□□□ -1.37
TPM1-222ENST00000560131 SHISA8B8ZZ34 492 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms