RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 GPR75-ASB3A0A0A6YYF3 556 aa21.84■■□□□ 1.09
HDDC3-205ENST00000559898 FAM196BA6NMK8 535 aa21.84■■□□□ 1.09
HDDC3-205ENST00000559898 PHF20L1A8MW92 1017 aa21.84■■□□□ 1.09
HDDC3-205ENST00000559898 BTBD19C9JJ37 291 aa21.84■■□□□ 1.09
HDDC3-205ENST00000559898 SPTY2D1Q68D10 685 aaPredicted RBP21.84■■□□□ 1.09
HDDC3-205ENST00000559898 OTOP1Q7RTM1 612 aa21.84■■□□□ 1.09
HDDC3-205ENST00000559898 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.84■■□□□ 1.09
HDDC3-205ENST00000559898 RAI14Q9P0K7 980 aa21.84■■□□□ 1.09
HDDC3-205ENST00000559898 EXOC6BQ9Y2D4 811 aa21.84■■□□□ 1.09
HDDC3-205ENST00000559898 PHIPQ8WWQ0 1821 aa21.84■■□□□ 1.09
HDDC3-205ENST00000559898 CYP2E1P05181 493 aaPredicted RBP21.83■■□□□ 1.09
HDDC3-205ENST00000559898 PPIL2Q13356 520 aa21.83■■□□□ 1.09
HDDC3-205ENST00000559898 MOGSQ13724 837 aa21.83■■□□□ 1.09
HDDC3-205ENST00000559898 ADGRA1Q86SQ6 560 aa21.83■■□□□ 1.09
HDDC3-205ENST00000559898 CCDC84Q86UT8 332 aaPredicted RBP21.83■■□□□ 1.09
HDDC3-205ENST00000559898 GPR108Q9NPR9 543 aa21.83■■□□□ 1.09
HDDC3-205ENST00000559898 TRIM17Q9Y577 477 aa21.83■■□□□ 1.09
HDDC3-205ENST00000559898 MAST2Q6P0Q8 1798 aa21.83■■□□□ 1.09
HDDC3-205ENST00000559898 SIPA1L1O43166 1804 aa21.83■■□□□ 1.08
HDDC3-205ENST00000559898 ENTPD3O75355 529 aa21.82■■□□□ 1.08
HDDC3-205ENST00000559898 ZAP70P43403 619 aa21.82■■□□□ 1.08
HDDC3-205ENST00000559898 TAF1CQ15572 869 aaPredicted RBP21.82■■□□□ 1.08
HDDC3-205ENST00000559898 TTC39AQ5SRH9 613 aa21.82■■□□□ 1.08
HDDC3-205ENST00000559898 C20orf194Q5TEA3 1177 aa21.82■■□□□ 1.08
HDDC3-205ENST00000559898 FBXO46Q6PJ61 603 aaPredicted RBP21.82■■□□□ 1.08
HDDC3-205ENST00000559898 PIH1D3Q9NQM4 214 aaKnown RBP21.82■■□□□ 1.08
HDDC3-205ENST00000559898 COG6Q9Y2V7 657 aa21.82■■□□□ 1.08
HDDC3-205ENST00000559898 ECM2O94769 699 aaPredicted RBP21.81■■□□□ 1.08
HDDC3-205ENST00000559898 UQCRFS1P1P0C7P4 283 aa21.81■■□□□ 1.08
HDDC3-205ENST00000559898 OTUD7BQ6GQQ9 843 aa21.81■■□□□ 1.08
HDDC3-205ENST00000559898 SIRT2Q8IXJ6 389 aa21.81■■□□□ 1.08
HDDC3-205ENST00000559898 HOOK2Q96ED9 719 aa21.81■■□□□ 1.08
HDDC3-205ENST00000559898 ARHGAP39Q9C0H5 1083 aa21.81■■□□□ 1.08
HDDC3-205ENST00000559898 DOCK1Q14185 1865 aa21.8■■□□□ 1.08
HDDC3-205ENST00000559898 MLLT1Q03111 559 aaPredicted RBP21.8■■□□□ 1.08
HDDC3-205ENST00000559898 PPATQ06203 517 aa21.8■■□□□ 1.08
HDDC3-205ENST00000559898 NOL9Q5SY16 702 aaKnown RBP21.8■■□□□ 1.08
HDDC3-205ENST00000559898 ZSCAN29Q8IWY8 852 aaPredicted RBP21.8■■□□□ 1.08
HDDC3-205ENST00000559898 SH3RF3Q8TEJ3 882 aaPredicted RBP21.8■■□□□ 1.08
HDDC3-205ENST00000559898 PTPRFP10586 1907 aa21.8■■□□□ 1.08
HDDC3-205ENST00000559898 CETPP11597 493 aa21.79■■□□□ 1.08
HDDC3-205ENST00000559898 SP3Q02447 781 aa21.79■■□□□ 1.08
HDDC3-205ENST00000559898 SNAPC2Q13487 334 aa21.79■■□□□ 1.08
HDDC3-205ENST00000559898 RRP1BQ14684 758 aaKnown RBP21.79■■□□□ 1.08
HDDC3-205ENST00000559898 PKN2Q16513 984 aaKnown RBP21.79■■□□□ 1.08
HDDC3-205ENST00000559898 LRP2BPQ9P2M1 347 aa21.79■■□□□ 1.08
HDDC3-205ENST00000559898 FOCADQ5VW36 1801 aa21.78■■□□□ 1.08
HDDC3-205ENST00000559898 MAP3K10Q02779 954 aa21.78■■□□□ 1.08
HDDC3-205ENST00000559898 SLF2Q8IX21 1173 aa21.78■■□□□ 1.08
HDDC3-205ENST00000559898 IL1RAPL2Q9NP60 686 aa21.78■■□□□ 1.08
HDDC3-205ENST00000559898 KCNH4Q9UQ05 1017 aa21.78■■□□□ 1.08
HDDC3-205ENST00000559898 CENPFP49454 3210 aa21.78■■□□□ 1.08
HDDC3-205ENST00000559898 ATAD5Q96QE3 1844 aa21.78■■□□□ 1.08
HDDC3-205ENST00000559898 CCDC158Q5M9N0 1113 aa21.77■■□□□ 1.08
HDDC3-205ENST00000559898 ANTXR1Q9H6X2 564 aa21.77■■□□□ 1.08
HDDC3-205ENST00000559898 ZFYVE28Q9HCC9 887 aa21.77■■□□□ 1.08
HDDC3-205ENST00000559898 AATFQ9NY61 560 aaKnown RBP eCLIP21.77■■□□□ 1.08
HDDC3-205ENST00000559898 RCAN3Q9UKA8 241 aa21.77■■□□□ 1.08
HDDC3-205ENST00000559898 APBB1O00213 710 aa21.76■■□□□ 1.07
HDDC3-205ENST00000559898 CTGFP29279 349 aa21.76■■□□□ 1.07
HDDC3-205ENST00000559898 DYNLL1P63167 89 aaKnown RBP21.76■■□□□ 1.07
HDDC3-205ENST00000559898 GPAT2Q6NUI2 795 aa21.76■■□□□ 1.07
HDDC3-205ENST00000559898 SCYL3Q8IZE3 742 aa21.76■■□□□ 1.07
HDDC3-205ENST00000559898 ERO1AQ96HE7 468 aa21.76■■□□□ 1.07
HDDC3-205ENST00000559898 OSBPL5Q9H0X9 879 aaPredicted RBP21.76■■□□□ 1.07
HDDC3-205ENST00000559898 PTPN22Q9Y2R2 807 aa21.76■■□□□ 1.07
HDDC3-205ENST00000559898 LDHCP07864 332 aa21.75■■□□□ 1.07
HDDC3-205ENST00000559898 PTPRAP18433 802 aa21.75■■□□□ 1.07
HDDC3-205ENST00000559898 GSTO1P78417 241 aa21.75■■□□□ 1.07
HDDC3-205ENST00000559898 NAA16Q6N069 864 aaPredicted RBP21.75■■□□□ 1.07
HDDC3-205ENST00000559898 TEX11Q8IYF3 940 aa21.75■■□□□ 1.07
HDDC3-205ENST00000559898 BCL11AQ9H165 835 aa21.75■■□□□ 1.07
HDDC3-205ENST00000559898 EFCC1Q9HA90 598 aa21.75■■□□□ 1.07
HDDC3-205ENST00000559898 ZBTB40Q9NUA8 1239 aa21.75■■□□□ 1.07
HDDC3-205ENST00000559898 CPA4Q9UI42 421 aa21.75■■□□□ 1.07
HDDC3-205ENST00000559898 ZHX2Q9Y6X8 837 aa21.75■■□□□ 1.07
HDDC3-205ENST00000559898 PDHXO00330 501 aa21.74■■□□□ 1.07
HDDC3-205ENST00000559898 TLR2O60603 784 aa21.74■■□□□ 1.07
HDDC3-205ENST00000559898 SHROOM1Q2M3G4 852 aaPredicted RBP21.74■■□□□ 1.07
HDDC3-205ENST00000559898 AACSQ86V21 672 aa21.74■■□□□ 1.07
HDDC3-205ENST00000559898 ZNF512BQ96KM6 892 aaPredicted RBP21.74■■□□□ 1.07
HDDC3-205ENST00000559898 ADGRA2Q96PE1 1338 aa21.74■■□□□ 1.07
HDDC3-205ENST00000559898 JAG1P78504 1218 aa21.73■■□□□ 1.07
HDDC3-205ENST00000559898 RHPN1Q8TCX5 695 aa21.73■■□□□ 1.07
HDDC3-205ENST00000559898 AFG3L2Q9Y4W6 797 aa21.73■■□□□ 1.07
HDDC3-205ENST00000559898 CYP2C8P10632 490 aa21.72■■□□□ 1.07
HDDC3-205ENST00000559898 SLC4A8Q2Y0W8 1093 aa21.72■■□□□ 1.07
HDDC3-205ENST00000559898 ANKRD23Q86SG2 305 aa21.72■■□□□ 1.07
HDDC3-205ENST00000559898 MAPKAPK5Q8IW41 473 aa21.72■■□□□ 1.07
HDDC3-205ENST00000559898 TGFBRAP1Q8WUH2 860 aa21.72■■□□□ 1.07
HDDC3-205ENST00000559898 POTEFA5A3E0 1075 aa21.71■■□□□ 1.07
HDDC3-205ENST00000559898 NPM3O75607 178 aaKnown RBP21.71■■□□□ 1.07
HDDC3-205ENST00000559898 C17orf99Q6UX52 265 aa21.71■■□□□ 1.07
HDDC3-205ENST00000559898 DNAJC18Q9H819 358 aa21.71■■□□□ 1.07
HDDC3-205ENST00000559898 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.71■■□□□ 1.07
HDDC3-205ENST00000559898 PTCH2Q9Y6C5 1203 aa21.71■■□□□ 1.07
HDDC3-205ENST00000559898 A0A0G2JLL6 359 aaPredicted RBP21.7■■□□□ 1.06
HDDC3-205ENST00000559898 PPP4CP60510 307 aa21.7■■□□□ 1.06
HDDC3-205ENST00000559898 PRRT2Q7Z6L0 340 aaPredicted RBP21.7■■□□□ 1.06
HDDC3-205ENST00000559898 MIGA1Q8NAN2 632 aa21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms