RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 DHX36Q9H2U1 1008 aaKnown RBP11.05□□□□□ -0.64
LDLR-210ENST00000559340 ARMT1Q9H993 441 aa11.05□□□□□ -0.64
LDLR-210ENST00000559340 GGA3Q9NZ52 723 aa11.05□□□□□ -0.64
LDLR-210ENST00000559340 TAOK2Q9UL54 1235 aa11.05□□□□□ -0.64
LDLR-210ENST00000559340 CCDC171Q6TFL3 1326 aa11.05□□□□□ -0.64
LDLR-210ENST00000559340 A0A0D9SFI3 127 aa11.04□□□□□ -0.64
LDLR-210ENST00000559340 TCP10L2B9ZVM9 353 aa11.04□□□□□ -0.64
LDLR-210ENST00000559340 M0R2C6 588 aa11.04□□□□□ -0.64
LDLR-210ENST00000559340 EGFRP00533 1210 aa11.04□□□□□ -0.64
LDLR-210ENST00000559340 NF2P35240 595 aa11.04□□□□□ -0.64
LDLR-210ENST00000559340 SUPT20HL1Q3ZLR7 823 aa11.04□□□□□ -0.64
LDLR-210ENST00000559340 KRT26Q7Z3Y9 468 aa11.04□□□□□ -0.64
LDLR-210ENST00000559340 TTC6Q86TZ1 520 aa11.04□□□□□ -0.64
LDLR-210ENST00000559340 ZSCAN29Q8IWY8 852 aaPredicted RBP11.04□□□□□ -0.64
LDLR-210ENST00000559340 LCORLQ8N3X6 602 aa11.04□□□□□ -0.64
LDLR-210ENST00000559340 ESYT1Q9BSJ8 1104 aa11.04□□□□□ -0.64
LDLR-210ENST00000559340 CTNNA3Q9UI47 895 aa11.04□□□□□ -0.64
LDLR-210ENST00000559340 PCDHAC2Q9Y5I4 1007 aa11.04□□□□□ -0.64
LDLR-210ENST00000559340 SGSM2O43147 1006 aa11.03□□□□□ -0.64
LDLR-210ENST00000559340 WDHD1O75717 1129 aaPredicted RBP11.03□□□□□ -0.64
LDLR-210ENST00000559340 REC8O95072 547 aa11.03□□□□□ -0.64
LDLR-210ENST00000559340 POLR3DP05423 398 aaPredicted RBP11.03□□□□□ -0.64
LDLR-210ENST00000559340 HLA-DOAP06340 250 aa11.03□□□□□ -0.64
LDLR-210ENST00000559340 SLC3A2P08195 630 aaKnown RBP11.03□□□□□ -0.64
LDLR-210ENST00000559340 PICALMQ13492 652 aa11.03□□□□□ -0.64
LDLR-210ENST00000559340 RASA3Q14644 834 aa11.03□□□□□ -0.64
LDLR-210ENST00000559340 ALX1Q15699 326 aa11.03□□□□□ -0.64
LDLR-210ENST00000559340 SLFNL1Q499Z3 407 aa11.03□□□□□ -0.64
LDLR-210ENST00000559340 TNS4Q8IZW8 715 aa11.03□□□□□ -0.64
LDLR-210ENST00000559340 SEC62Q99442 399 aaKnown RBP11.03□□□□□ -0.64
LDLR-210ENST00000559340 NAPBQ9H115 298 aa11.03□□□□□ -0.64
LDLR-210ENST00000559340 DEFB129Q9H1M3 183 aa11.03□□□□□ -0.64
LDLR-210ENST00000559340 COL2A1P02458 1487 aaPredicted RBP11.02□□□□□ -0.65
LDLR-210ENST00000559340 EPB41L2O43491 1005 aaKnown RBP11.02□□□□□ -0.65
LDLR-210ENST00000559340 HSPA1AP0DMV8 641 aaKnown RBP11.02□□□□□ -0.65
LDLR-210ENST00000559340 HSPA1BP0DMV9 641 aaKnown RBP11.02□□□□□ -0.65
LDLR-210ENST00000559340 TDO2P48775 406 aa11.02□□□□□ -0.65
LDLR-210ENST00000559340 TCP10Q12799 353 aa11.02□□□□□ -0.65
LDLR-210ENST00000559340 DCAF15Q66K64 600 aa11.02□□□□□ -0.65
LDLR-210ENST00000559340 USP48Q86UV5 1035 aa11.02□□□□□ -0.65
LDLR-210ENST00000559340 FOXP4Q8IVH2 680 aaPredicted RBP11.02□□□□□ -0.65
LDLR-210ENST00000559340 MAPKAPK5Q8IW41 473 aa11.02□□□□□ -0.65
LDLR-210ENST00000559340 DSCC1Q9BVC3 393 aa11.02□□□□□ -0.65
LDLR-210ENST00000559340 TRIM34Q9BYJ4 488 aa11.02□□□□□ -0.65
LDLR-210ENST00000559340 OSBPL5Q9H0X9 879 aaPredicted RBP11.02□□□□□ -0.65
LDLR-210ENST00000559340 MCM9Q9NXL9 1143 aa11.02□□□□□ -0.65
LDLR-210ENST00000559340 PI4KBQ9UBF8 816 aa11.02□□□□□ -0.65
LDLR-210ENST00000559340 GSG1L2A8MUP6 293 aa11.01□□□□□ -0.65
LDLR-210ENST00000559340 CHGBP05060 677 aa11.01□□□□□ -0.65
LDLR-210ENST00000559340 HSPD1P10809 573 aaKnown RBP11.01□□□□□ -0.65
LDLR-210ENST00000559340 CACNB3P54284 484 aa11.01□□□□□ -0.65
LDLR-210ENST00000559340 SBK1Q52WX2 424 aa11.01□□□□□ -0.65
LDLR-210ENST00000559340 CCDC129Q6ZRS4 1044 aa11.01□□□□□ -0.65
LDLR-210ENST00000559340 IFNL3Q8IZI9 196 aa11.01□□□□□ -0.65
LDLR-210ENST00000559340 PIAS4Q8N2W9 510 aaPredicted RBP11.01□□□□□ -0.65
LDLR-210ENST00000559340 SDR42E1Q8WUS8 393 aa11.01□□□□□ -0.65
LDLR-210ENST00000559340 ZNF287Q9HBT7 754 aa11.01□□□□□ -0.65
LDLR-210ENST00000559340 DCP1AQ9NPI6 582 aaPredicted RBP11.01□□□□□ -0.65
LDLR-210ENST00000559340 CREBZFQ9NS37 354 aa11.01□□□□□ -0.65
LDLR-210ENST00000559340 ARPP21Q9UBL0 812 aaPredicted RBP11.01□□□□□ -0.65
LDLR-210ENST00000559340 FAM198AQ9UFP1 575 aa11.01□□□□□ -0.65
LDLR-210ENST00000559340 U3KPZ7 1027 aaPredicted RBP11.01□□□□□ -0.65
LDLR-210ENST00000559340 FLT1P17948 1338 aa11.01□□□□□ -0.65
LDLR-210ENST00000559340 PRKAB2O43741 272 aa11□□□□□ -0.65
LDLR-210ENST00000559340 PPP1R12BO60237 982 aaPredicted RBP11□□□□□ -0.65
LDLR-210ENST00000559340 NFIAQ12857 509 aa11□□□□□ -0.65
LDLR-210ENST00000559340 MAP1SQ66K74 1059 aaPredicted RBP11□□□□□ -0.65
LDLR-210ENST00000559340 ZNF589Q86UQ0 364 aaPredicted RBP11□□□□□ -0.65
LDLR-210ENST00000559340 CRACR2BQ8N4Y2 399 aaPredicted RBP11□□□□□ -0.65
LDLR-210ENST00000559340 GLIS2Q9BZE0 524 aaPredicted RBP11□□□□□ -0.65
LDLR-210ENST00000559340 ANO2Q9NQ90 1003 aa11□□□□□ -0.65
LDLR-210ENST00000559340 DDX4Q9NQI0 724 aaKnown RBP11□□□□□ -0.65
LDLR-210ENST00000559340 HERC5Q9UII4 1024 aaKnown RBP11□□□□□ -0.65
LDLR-210ENST00000559340 ASTN2O75129 1339 aaPredicted RBP11□□□□□ -0.65
LDLR-210ENST00000559340 ZMYM6O95789 1325 aa11□□□□□ -0.65
LDLR-210ENST00000559340 ATRNL1Q5VV63 1379 aa11□□□□□ -0.65
LDLR-210ENST00000559340 LAMB1P07942 1786 aa11□□□□□ -0.65
LDLR-210ENST00000559340 MINDY4BA8MYZ0 360 aa10.99□□□□□ -0.65
LDLR-210ENST00000559340 USP17L12C9JPN9 530 aa10.99□□□□□ -0.65
LDLR-210ENST00000559340 USP17L21D6R901 530 aa10.99□□□□□ -0.65
LDLR-210ENST00000559340 TBC1D12O60347 775 aa10.99□□□□□ -0.65
LDLR-210ENST00000559340 FGAP02671 866 aa10.99□□□□□ -0.65
LDLR-210ENST00000559340 MCCP23508 829 aa10.99□□□□□ -0.65
LDLR-210ENST00000559340 NT5C2P49902 561 aa10.99□□□□□ -0.65
LDLR-210ENST00000559340 IMMTQ16891 758 aaKnown RBP10.99□□□□□ -0.65
LDLR-210ENST00000559340 RNF20Q5VTR2 975 aa10.99□□□□□ -0.65
LDLR-210ENST00000559340 ARMC9Q7Z3E5 817 aa10.99□□□□□ -0.65
LDLR-210ENST00000559340 CSRNP1Q96S65 589 aa10.99□□□□□ -0.65
LDLR-210ENST00000559340 TMEM39BQ9GZU3 492 aa10.99□□□□□ -0.65
LDLR-210ENST00000559340 MKRN1Q9UHC7 482 aaKnown RBP10.99□□□□□ -0.65
LDLR-210ENST00000559340 SAP30BPQ9UHR5 308 aaKnown RBP10.99□□□□□ -0.65
LDLR-210ENST00000559340 CNTNAP1P78357 1384 aa10.99□□□□□ -0.65
LDLR-210ENST00000559340 ZNF213O14771 459 aa10.98□□□□□ -0.65
LDLR-210ENST00000559340 POTEIP0CG38 1075 aa10.98□□□□□ -0.65
LDLR-210ENST00000559340 POTEJP0CG39 1038 aa10.98□□□□□ -0.65
LDLR-210ENST00000559340 PCP11498 1178 aaKnown RBP10.98□□□□□ -0.65
LDLR-210ENST00000559340 IREB2P48200 963 aaKnown RBP10.98□□□□□ -0.65
LDLR-210ENST00000559340 FKBP1BP68106 108 aa10.98□□□□□ -0.65
LDLR-210ENST00000559340 PDE4BQ07343 736 aa10.98□□□□□ -0.65
LDLR-210ENST00000559340 TTLL12Q14166 644 aaPredicted RBP10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms