RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 MINDY4BA8MYZ0 360 aa20.01■□□□□ 0.79
SNX1-203ENST00000558040 USP17L12C9JPN9 530 aa20.01■□□□□ 0.79
SNX1-203ENST00000558040 USP17L21D6R901 530 aa20.01■□□□□ 0.79
SNX1-203ENST00000558040 E7EWF7 191 aa20.01■□□□□ 0.79
SNX1-203ENST00000558040 NPM3O75607 178 aaKnown RBP20.01■□□□□ 0.79
SNX1-203ENST00000558040 WDHD1O75717 1129 aaPredicted RBP20.01■□□□□ 0.79
SNX1-203ENST00000558040 HMGB1P09429 215 aaKnown RBP20.01■□□□□ 0.79
SNX1-203ENST00000558040 PICALMQ13492 652 aa20.01■□□□□ 0.79
SNX1-203ENST00000558040 PRMT6Q96LA8 375 aaPredicted RBP20.01■□□□□ 0.79
SNX1-203ENST00000558040 IDI2Q9BXS1 227 aa20.01■□□□□ 0.79
SNX1-203ENST00000558040 RNF41Q9H4P4 317 aaPredicted RBP20.01■□□□□ 0.79
SNX1-203ENST00000558040 PCDHAC2Q9Y5I4 1007 aa20.01■□□□□ 0.79
SNX1-203ENST00000558040 LAMB1P07942 1786 aa20■□□□□ 0.79
SNX1-203ENST00000558040 ST18O60284 1047 aa20■□□□□ 0.79
SNX1-203ENST00000558040 POLR3DP05423 398 aaPredicted RBP20■□□□□ 0.79
SNX1-203ENST00000558040 PCP11498 1178 aaKnown RBP20■□□□□ 0.79
SNX1-203ENST00000558040 CASTP20810 708 aaKnown RBP20■□□□□ 0.79
SNX1-203ENST00000558040 TRDNQ13061 729 aa20■□□□□ 0.79
SNX1-203ENST00000558040 ADCK5Q3MIX3 580 aa20■□□□□ 0.79
SNX1-203ENST00000558040 BLOC1S2Q6QNY1 142 aa20■□□□□ 0.79
SNX1-203ENST00000558040 RALYLQ86SE5 291 aaKnown RBP20■□□□□ 0.79
SNX1-203ENST00000558040 NEK1Q96PY6 1258 aa20■□□□□ 0.79
SNX1-203ENST00000558040 TDRD3Q9H7E2 651 aaKnown RBP20■□□□□ 0.79
SNX1-203ENST00000558040 GPRC5DQ9NZD1 345 aa20■□□□□ 0.79
SNX1-203ENST00000558040 CYP46A1Q9Y6A2 500 aa20■□□□□ 0.79
SNX1-203ENST00000558040 BAZ2AQ9UIF9 1905 aaKnown RBP20■□□□□ 0.79
SNX1-203ENST00000558040 LMOD1P29536 600 aaPredicted RBP19.99■□□□□ 0.79
SNX1-203ENST00000558040 SPDYE2Q495Y8 402 aa19.99■□□□□ 0.79
SNX1-203ENST00000558040 AKNAD1Q5T1N1 836 aa19.99■□□□□ 0.79
SNX1-203ENST00000558040 NCOA7Q8NI08 942 aa19.99■□□□□ 0.79
SNX1-203ENST00000558040 STAG1Q8WVM7 1258 aa19.99■□□□□ 0.79
SNX1-203ENST00000558040 ZBED3Q96IU2 234 aaPredicted RBP19.99■□□□□ 0.79
SNX1-203ENST00000558040 OSBPL5Q9H0X9 879 aaPredicted RBP19.99■□□□□ 0.79
SNX1-203ENST00000558040 CNNM2Q9H8M5 875 aa19.99■□□□□ 0.79
SNX1-203ENST00000558040 ZSWIM6Q9HCJ5 1215 aa19.99■□□□□ 0.79
SNX1-203ENST00000558040 TAF6LQ9Y6J9 622 aa19.99■□□□□ 0.79
SNX1-203ENST00000558040 DDX60LQ5H9U9 1706 aaKnown RBP19.99■□□□□ 0.79
SNX1-203ENST00000558040 WNT10BO00744 389 aa19.98■□□□□ 0.79
SNX1-203ENST00000558040 ENTPD3O75355 529 aa19.98■□□□□ 0.79
SNX1-203ENST00000558040 DDNO94850 711 aaPredicted RBP19.98■□□□□ 0.79
SNX1-203ENST00000558040 NEK4P51957 841 aa19.98■□□□□ 0.79
SNX1-203ENST00000558040 CTDSPL2Q05D32 466 aa19.98■□□□□ 0.79
SNX1-203ENST00000558040 KIF4BQ2VIQ3 1234 aa19.98■□□□□ 0.79
SNX1-203ENST00000558040 C12orf60Q5U649 245 aa19.98■□□□□ 0.79
SNX1-203ENST00000558040 MFSD6Q6ZSS7 791 aa19.98■□□□□ 0.79
SNX1-203ENST00000558040 STOX1Q6ZVD7 989 aa19.98■□□□□ 0.79
SNX1-203ENST00000558040 RUFY3Q7L099 469 aa19.98■□□□□ 0.79
SNX1-203ENST00000558040 TTC6Q86TZ1 520 aa19.98■□□□□ 0.79
SNX1-203ENST00000558040 TBC1D10CQ8IV04 446 aa19.98■□□□□ 0.79
SNX1-203ENST00000558040 UPF3BQ9BZI7 483 aaKnown RBP19.98■□□□□ 0.79
SNX1-203ENST00000558040 KRT23Q9C075 422 aa19.98■□□□□ 0.79
SNX1-203ENST00000558040 ZNF70Q9UC06 446 aaPredicted RBP19.98■□□□□ 0.79
SNX1-203ENST00000558040 SAP30BPQ9UHR5 308 aaKnown RBP19.98■□□□□ 0.79
SNX1-203ENST00000558040 SHTN1A0MZ66 631 aa19.97■□□□□ 0.79
SNX1-203ENST00000558040 NFIAQ12857 509 aa19.97■□□□□ 0.79
SNX1-203ENST00000558040 FKBP1CQ5VVH2 108 aa19.97■□□□□ 0.79
SNX1-203ENST00000558040 NBPF3Q9H094 633 aa19.97■□□□□ 0.79
SNX1-203ENST00000558040 DHX36Q9H2U1 1008 aaKnown RBP19.97■□□□□ 0.79
SNX1-203ENST00000558040 DDX4Q9NQI0 724 aaKnown RBP19.97■□□□□ 0.79
SNX1-203ENST00000558040 ROBO3Q96MS0 1386 aa19.96■□□□□ 0.79
SNX1-203ENST00000558040 MYH1P12882 1939 aa19.96■□□□□ 0.79
SNX1-203ENST00000558040 CYP2D7A0A087X1C5 515 aa19.96■□□□□ 0.79
SNX1-203ENST00000558040 CLRN2A0PK11 232 aa19.96■□□□□ 0.79
SNX1-203ENST00000558040 HLA-DOAP06340 250 aa19.96■□□□□ 0.79
SNX1-203ENST00000558040 NT5C2P49902 561 aa19.96■□□□□ 0.79
SNX1-203ENST00000558040 CACNB3P54284 484 aa19.96■□□□□ 0.79
SNX1-203ENST00000558040 PDE4BQ07343 736 aa19.96■□□□□ 0.79
SNX1-203ENST00000558040 BECN1Q14457 450 aa19.96■□□□□ 0.79
SNX1-203ENST00000558040 TBC1D10BQ4KMP7 808 aaPredicted RBP19.96■□□□□ 0.79
SNX1-203ENST00000558040 RBM26Q5T8P6 1007 aaKnown RBP19.96■□□□□ 0.79
SNX1-203ENST00000558040 ZNF287Q9HBT7 754 aa19.96■□□□□ 0.79
SNX1-203ENST00000558040 COL2A1P02458 1487 aaPredicted RBP19.96■□□□□ 0.79
SNX1-203ENST00000558040 CYP2D6P10635 497 aa19.95■□□□□ 0.78
SNX1-203ENST00000558040 RPS6KB1P23443 525 aa19.95■□□□□ 0.78
SNX1-203ENST00000558040 TNNI2P48788 182 aa19.95■□□□□ 0.78
SNX1-203ENST00000558040 NBPF9Q3BBW0 867 aa19.95■□□□□ 0.78
SNX1-203ENST00000558040 SAMD7Q7Z3H4 446 aa19.95■□□□□ 0.78
SNX1-203ENST00000558040 SNX21Q969T3 373 aa19.95■□□□□ 0.78
SNX1-203ENST00000558040 L3MBTL3Q96JM7 780 aaPredicted RBP19.95■□□□□ 0.78
SNX1-203ENST00000558040 VEZTQ9HBM0 779 aa19.95■□□□□ 0.78
SNX1-203ENST00000558040 TOMM22Q9NS69 142 aa19.95■□□□□ 0.78
SNX1-203ENST00000558040 PDRG1Q9NUG6 133 aa19.95■□□□□ 0.78
SNX1-203ENST00000558040 FAM198AQ9UFP1 575 aa19.95■□□□□ 0.78
SNX1-203ENST00000558040 GLTPD2A6NH11 291 aa19.94■□□□□ 0.78
SNX1-203ENST00000558040 MCM2P49736 904 aa19.94■□□□□ 0.78
SNX1-203ENST00000558040 TCP10Q12799 353 aa19.94■□□□□ 0.78
SNX1-203ENST00000558040 TNFAIP1Q13829 316 aa19.94■□□□□ 0.78
SNX1-203ENST00000558040 DHX32Q7L7V1 743 aaKnown RBP19.94■□□□□ 0.78
SNX1-203ENST00000558040 HSCBQ8IWL3 235 aa19.94■□□□□ 0.78
SNX1-203ENST00000558040 ADARB2Q9NS39 739 aaKnown RBP19.94■□□□□ 0.78
SNX1-203ENST00000558040 TAOK2Q9UL54 1235 aa19.94■□□□□ 0.78
SNX1-203ENST00000558040 NEDD4P46934 1319 aa19.94■□□□□ 0.78
SNX1-203ENST00000558040 GOLGB1Q14789 3259 aaKnown RBP19.94■□□□□ 0.78
SNX1-203ENST00000558040 TCP10L2B9ZVM9 353 aa19.93■□□□□ 0.78
SNX1-203ENST00000558040 FGRP09769 529 aa19.93■□□□□ 0.78
SNX1-203ENST00000558040 MCM5P33992 734 aa19.93■□□□□ 0.78
SNX1-203ENST00000558040 EPS15P42566 896 aa19.93■□□□□ 0.78
SNX1-203ENST00000558040 PLCD1P51178 756 aa19.93■□□□□ 0.78
SNX1-203ENST00000558040 SLC4A8Q2Y0W8 1093 aa19.93■□□□□ 0.78
SNX1-203ENST00000558040 FAM83AQ86UY5 434 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms