RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 SHC4Q6S5L8 630 aa18.72■□□□□ 0.59
SHMT2-232ENST00000557487 TOM1L2Q6ZVM7 507 aa18.72■□□□□ 0.59
SHMT2-232ENST00000557487 WASF1Q92558 559 aa18.72■□□□□ 0.59
SHMT2-232ENST00000557487 MAP3K14Q99558 947 aa18.72■□□□□ 0.59
SHMT2-232ENST00000557487 ISCA1Q9BUE6 129 aa18.72■□□□□ 0.59
SHMT2-232ENST00000557487 SH2B2O14492 632 aaPredicted RBP18.72■□□□□ 0.59
SHMT2-232ENST00000557487 STX10O60499 249 aa18.72■□□□□ 0.59
SHMT2-232ENST00000557487 PPFIA3O75145 1194 aa18.72■□□□□ 0.59
SHMT2-232ENST00000557487 ATP1A3P13637 1013 aa18.72■□□□□ 0.59
SHMT2-232ENST00000557487 TEX35Q5T0J7 233 aa18.72■□□□□ 0.59
SHMT2-232ENST00000557487 KRBA2Q6ZNG9 492 aa18.72■□□□□ 0.59
SHMT2-232ENST00000557487 TTLL7Q6ZT98 887 aa18.72■□□□□ 0.59
SHMT2-232ENST00000557487 ZNF594Q96JF6 807 aaPredicted RBP18.72■□□□□ 0.59
SHMT2-232ENST00000557487 THSD7AQ9UPZ6 1657 aa18.71■□□□□ 0.59
SHMT2-232ENST00000557487 MARCKSP29966 332 aaPredicted RBP18.71■□□□□ 0.59
SHMT2-232ENST00000557487 CT47A1Q5JQC4 288 aaPredicted RBP18.71■□□□□ 0.59
SHMT2-232ENST00000557487 MYH7P12883 1935 aa18.71■□□□□ 0.59
SHMT2-232ENST00000557487 TBX2Q13207 712 aaPredicted RBP18.7■□□□□ 0.58
SHMT2-232ENST00000557487 TRIML1Q8N9V2 468 aa18.7■□□□□ 0.58
SHMT2-232ENST00000557487 CNNM3Q8NE01 707 aa18.7■□□□□ 0.58
SHMT2-232ENST00000557487 PUS3Q9BZE2 481 aaKnown RBP18.7■□□□□ 0.58
SHMT2-232ENST00000557487 PUS7LQ9H0K6 701 aaKnown RBP18.7■□□□□ 0.58
SHMT2-232ENST00000557487 UBE3CQ15386 1083 aa18.7■□□□□ 0.58
SHMT2-232ENST00000557487 SGMS1Q86VZ5 419 aa18.7■□□□□ 0.58
SHMT2-232ENST00000557487 GPR161Q8N6U8 529 aaKnown RBP18.7■□□□□ 0.58
SHMT2-232ENST00000557487 MLKLQ8NB16 471 aa18.7■□□□□ 0.58
SHMT2-232ENST00000557487 KCNH3Q9ULD8 1083 aa18.7■□□□□ 0.58
SHMT2-232ENST00000557487 PPP2R2CQ9Y2T4 447 aa18.7■□□□□ 0.58
SHMT2-232ENST00000557487 PARP3Q9Y6F1 533 aa18.7■□□□□ 0.58
SHMT2-232ENST00000557487 PCDH11XQ9BZA7 1347 aa18.69■□□□□ 0.58
SHMT2-232ENST00000557487 PCDH11YQ9BZA8 1340 aa18.69■□□□□ 0.58
SHMT2-232ENST00000557487 URI1O94763 535 aaPredicted RBP18.69■□□□□ 0.58
SHMT2-232ENST00000557487 CYP2C19P33261 490 aa18.69■□□□□ 0.58
SHMT2-232ENST00000557487 IARSP41252 1262 aaKnown RBP18.69■□□□□ 0.58
SHMT2-232ENST00000557487 ZAP70P43403 619 aa18.69■□□□□ 0.58
SHMT2-232ENST00000557487 NT5DC1Q5TFE4 455 aa18.69■□□□□ 0.58
SHMT2-232ENST00000557487 JAKMIP3Q5VZ66 844 aa18.69■□□□□ 0.58
SHMT2-232ENST00000557487 APOA5Q6Q788 366 aa18.69■□□□□ 0.58
SHMT2-232ENST00000557487 KRI1Q8N9T8 703 aaKnown RBP18.69■□□□□ 0.58
SHMT2-232ENST00000557487 UTP14AQ9BVJ6 771 aaKnown RBP18.69■□□□□ 0.58
SHMT2-232ENST00000557487 NID2Q14112 1375 aa18.69■□□□□ 0.58
SHMT2-232ENST00000557487 PCCAP05165 728 aaPredicted RBP18.68■□□□□ 0.58
SHMT2-232ENST00000557487 CASQ1P31415 396 aa18.68■□□□□ 0.58
SHMT2-232ENST00000557487 ADD2P35612 726 aa18.68■□□□□ 0.58
SHMT2-232ENST00000557487 ALX1Q15699 326 aa18.68■□□□□ 0.58
SHMT2-232ENST00000557487 KANK3Q6NY19 840 aa18.68■□□□□ 0.58
SHMT2-232ENST00000557487 METTL16Q86W50 562 aaKnown RBP18.68■□□□□ 0.58
SHMT2-232ENST00000557487 TMEM139Q8IV31 216 aa18.68■□□□□ 0.58
SHMT2-232ENST00000557487 ENOX1Q8TC92 643 aaKnown RBP18.68■□□□□ 0.58
SHMT2-232ENST00000557487 DPF2Q92785 391 aa18.68■□□□□ 0.58
SHMT2-232ENST00000557487 BAG1Q99933 345 aaPredicted RBP18.68■□□□□ 0.58
SHMT2-232ENST00000557487 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.68■□□□□ 0.585e-8■■■□□ 18.8
SHMT2-232ENST00000557487 KCPQ6ZWJ8 1503 aa18.68■□□□□ 0.58
SHMT2-232ENST00000557487 PAPPAQ13219 1627 aa18.68■□□□□ 0.58
SHMT2-232ENST00000557487 ZBTB43O43298 467 aa18.68■□□□□ 0.58
SHMT2-232ENST00000557487 CSF1RP07333 972 aa18.68■□□□□ 0.58
SHMT2-232ENST00000557487 ADORA1P30542 326 aa18.68■□□□□ 0.58
SHMT2-232ENST00000557487 LIFRP42702 1097 aa18.68■□□□□ 0.58
SHMT2-232ENST00000557487 TUBB4BP68371 445 aa18.68■□□□□ 0.58
SHMT2-232ENST00000557487 MAP3K9P80192 1104 aa18.68■□□□□ 0.58
SHMT2-232ENST00000557487 TCIRG1Q13488 830 aa18.68■□□□□ 0.58
SHMT2-232ENST00000557487 PNOCQ13519 176 aa18.68■□□□□ 0.58
SHMT2-232ENST00000557487 CDCA7Q9BWT1 371 aaPredicted RBP18.68■□□□□ 0.58
SHMT2-232ENST00000557487 FANCLQ9NW38 375 aa18.68■□□□□ 0.58
SHMT2-232ENST00000557487 VWA3AA6NCI4 1184 aa18.67■□□□□ 0.58
SHMT2-232ENST00000557487 NPHP1O15259 732 aa18.67■□□□□ 0.58
SHMT2-232ENST00000557487 PLA2G4AP47712 749 aa18.67■□□□□ 0.58
SHMT2-232ENST00000557487 TAF7LQ5H9L4 462 aa18.67■□□□□ 0.58
SHMT2-232ENST00000557487 SPECC1LQ69YQ0 1117 aa18.67■□□□□ 0.58
SHMT2-232ENST00000557487 ZNF579Q8NAF0 562 aaKnown RBP18.67■□□□□ 0.58
SHMT2-232ENST00000557487 CCDC34Q96HJ3 373 aa18.67■□□□□ 0.58
SHMT2-232ENST00000557487 PCDHA5Q9Y5H7 936 aa18.67■□□□□ 0.58
SHMT2-232ENST00000557487 MDM2Q00987 491 aaPredicted RBP18.66■□□□□ 0.58
SHMT2-232ENST00000557487 IFIT5Q13325 482 aaKnown RBP18.66■□□□□ 0.58
SHMT2-232ENST00000557487 SAFBQ15424 915 aaKnown RBP eCLIP18.66■□□□□ 0.58
SHMT2-232ENST00000557487 KRT27Q7Z3Y8 459 aa18.66■□□□□ 0.58
SHMT2-232ENST00000557487 LRRN4CLQ8ND94 238 aa18.66■□□□□ 0.58
SHMT2-232ENST00000557487 UBXN6Q9BZV1 441 aa18.66■□□□□ 0.58
SHMT2-232ENST00000557487 ZBTB3Q9H5J0 574 aa18.66■□□□□ 0.58
SHMT2-232ENST00000557487 GJB4Q9NTQ9 266 aa18.66■□□□□ 0.58
SHMT2-232ENST00000557487 TNS2Q63HR2 1409 aa18.66■□□□□ 0.58
SHMT2-232ENST00000557487 ZNF18P17022 549 aa18.66■□□□□ 0.58
SHMT2-232ENST00000557487 TUBB2AQ13885 445 aa18.66■□□□□ 0.58
SHMT2-232ENST00000557487 NKX1-1Q15270 411 aaPredicted RBP18.66■□□□□ 0.58
SHMT2-232ENST00000557487 NTRK3Q16288 839 aa18.66■□□□□ 0.58
SHMT2-232ENST00000557487 LONRF3Q496Y0 759 aa18.66■□□□□ 0.58
SHMT2-232ENST00000557487 RABGGTAQ92696 567 aa18.66■□□□□ 0.58
SHMT2-232ENST00000557487 MTA3Q9BTC8 594 aa18.66■□□□□ 0.58
SHMT2-232ENST00000557487 TUBB2BQ9BVA1 445 aa18.66■□□□□ 0.58
SHMT2-232ENST00000557487 CARD6Q9BX69 1037 aa18.66■□□□□ 0.58
SHMT2-232ENST00000557487 BCL11BQ9C0K0 894 aaPredicted RBP18.66■□□□□ 0.58
SHMT2-232ENST00000557487 NBPF3Q9H094 633 aa18.66■□□□□ 0.58
SHMT2-232ENST00000557487 TBC1D2BQ9UPU7 963 aa18.66■□□□□ 0.58
SHMT2-232ENST00000557487 GOLGA8AA7E2F4 631 aa18.65■□□□□ 0.58
SHMT2-232ENST00000557487 SSRP1Q08945 709 aaKnown RBP18.65■□□□□ 0.58
SHMT2-232ENST00000557487 SCARF1Q14162 830 aa18.65■□□□□ 0.58
SHMT2-232ENST00000557487 RILPL1Q5EBL4 403 aa18.65■□□□□ 0.58
SHMT2-232ENST00000557487 MRFAP1Q9Y605 127 aa18.65■□□□□ 0.58
SHMT2-232ENST00000557487 DISP2A7MBM2 1401 aa18.65■□□□□ 0.58
SHMT2-232ENST00000557487 CDHR2Q9BYE9 1310 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms