RNA–Protein interactions for RNA: ENST00000556929.5

TMEM260-213, Transcript of transmembrane protein 260, humanhuman

TSL 4

Gene TMEM260, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-213ENST00000556929 EPB41L2O43491 1005 aaKnown RBP11.63□□□□□ -0.55
TMEM260-213ENST00000556929 HSPD1P10809 573 aaKnown RBP11.63□□□□□ -0.55
TMEM260-213ENST00000556929 VEGFAP15692 232 aaPredicted RBP11.63□□□□□ -0.55
TMEM260-213ENST00000556929 RHBDL3P58872 404 aa11.63□□□□□ -0.55
TMEM260-213ENST00000556929 TNFAIP1Q13829 316 aa11.63□□□□□ -0.55
TMEM260-213ENST00000556929 GIMAP6Q6P9H5 292 aa11.63□□□□□ -0.55
TMEM260-213ENST00000556929 AMOTL1Q8IY63 956 aa11.63□□□□□ -0.55
TMEM260-213ENST00000556929 IFNL3Q8IZI9 196 aa11.63□□□□□ -0.55
TMEM260-213ENST00000556929 TRPM4Q8TD43 1214 aa11.63□□□□□ -0.55
TMEM260-213ENST00000556929 TGFBRAP1Q8WUH2 860 aa11.63□□□□□ -0.55
TMEM260-213ENST00000556929 DSCC1Q9BVC3 393 aa11.63□□□□□ -0.55
TMEM260-213ENST00000556929 IDI2Q9BXS1 227 aa11.63□□□□□ -0.55
TMEM260-213ENST00000556929 RRAGCQ9HB90 399 aa11.63□□□□□ -0.55
TMEM260-213ENST00000556929 VEZTQ9HBM0 779 aa11.63□□□□□ -0.55
TMEM260-213ENST00000556929 ZNF70Q9UC06 446 aaPredicted RBP11.63□□□□□ -0.55
TMEM260-213ENST00000556929 LAMA4Q16363 1823 aa11.63□□□□□ -0.55
TMEM260-213ENST00000556929 MYH8P13535 1937 aa11.62□□□□□ -0.55
TMEM260-213ENST00000556929 CLRN2A0PK11 232 aa11.62□□□□□ -0.55
TMEM260-213ENST00000556929 POTECB2RU33 542 aa11.62□□□□□ -0.55
TMEM260-213ENST00000556929 PRKAB2O43741 272 aa11.62□□□□□ -0.55
TMEM260-213ENST00000556929 EGFRP00533 1210 aa11.62□□□□□ -0.55
TMEM260-213ENST00000556929 TDO2P48775 406 aa11.62□□□□□ -0.55
TMEM260-213ENST00000556929 PICALMQ13492 652 aa11.62□□□□□ -0.55
TMEM260-213ENST00000556929 FKBP1CQ5VVH2 108 aa11.62□□□□□ -0.55
TMEM260-213ENST00000556929 APOBEC3FQ8IUX4 373 aaKnown RBP11.62□□□□□ -0.55
TMEM260-213ENST00000556929 SDR42E1Q8WUS8 393 aa11.62□□□□□ -0.55
TMEM260-213ENST00000556929 NAPBQ9H115 298 aa11.62□□□□□ -0.55
TMEM260-213ENST00000556929 IL25Q9H293 177 aa11.62□□□□□ -0.55
TMEM260-213ENST00000556929 TAF1DQ9H5J8 278 aaPredicted RBP11.62□□□□□ -0.55
TMEM260-213ENST00000556929 UTRNP46939 3433 aa11.62□□□□□ -0.55
TMEM260-213ENST00000556929 PITPNM2Q9BZ72 1349 aa11.61□□□□□ -0.55
TMEM260-213ENST00000556929 DDX60LQ5H9U9 1706 aaKnown RBP11.61□□□□□ -0.55
TMEM260-213ENST00000556929 GSG1L2A8MUP6 293 aa11.61□□□□□ -0.55
TMEM260-213ENST00000556929 ENTPD3O75355 529 aa11.61□□□□□ -0.55
TMEM260-213ENST00000556929 WDHD1O75717 1129 aaPredicted RBP11.61□□□□□ -0.55
TMEM260-213ENST00000556929 HIRAP54198 1017 aaPredicted RBP11.61□□□□□ -0.55
TMEM260-213ENST00000556929 ALX1Q15699 326 aa11.61□□□□□ -0.55
TMEM260-213ENST00000556929 EAPPQ56P03 285 aaPredicted RBP11.61□□□□□ -0.55
TMEM260-213ENST00000556929 VPS53Q5VIR6 699 aa11.61□□□□□ -0.55
TMEM260-213ENST00000556929 ANGEL2Q5VTE6 544 aaKnown RBP11.61□□□□□ -0.55
TMEM260-213ENST00000556929 FAM83AQ86UY5 434 aa11.61□□□□□ -0.55
TMEM260-213ENST00000556929 MAPKAPK5Q8IW41 473 aa11.61□□□□□ -0.55
TMEM260-213ENST00000556929 ZNF526Q8TF50 670 aaPredicted RBP11.61□□□□□ -0.55
TMEM260-213ENST00000556929 ZC3H15Q8WU90 426 aaKnown RBP11.61□□□□□ -0.55
TMEM260-213ENST00000556929 MAP4K1Q92918 833 aa11.61□□□□□ -0.55
TMEM260-213ENST00000556929 DCPSQ96C86 337 aaKnown RBP11.61□□□□□ -0.55
TMEM260-213ENST00000556929 BACH2Q9BYV9 841 aa11.61□□□□□ -0.55
TMEM260-213ENST00000556929 LSG1Q9H089 658 aaKnown RBP11.61□□□□□ -0.55
TMEM260-213ENST00000556929 UPF2Q9HAU5 1272 aaKnown RBP11.61□□□□□ -0.55
TMEM260-213ENST00000556929 DCP1AQ9NPI6 582 aaPredicted RBP11.61□□□□□ -0.55
TMEM260-213ENST00000556929 CTNNA3Q9UI47 895 aa11.61□□□□□ -0.55
TMEM260-213ENST00000556929 ZMYM6O95789 1325 aa11.6□□□□□ -0.55
TMEM260-213ENST00000556929 FLT1P17948 1338 aa11.6□□□□□ -0.55
TMEM260-213ENST00000556929 TCP10L2B9ZVM9 353 aa11.6□□□□□ -0.55
TMEM260-213ENST00000556929 MCCP23508 829 aa11.6□□□□□ -0.55
TMEM260-213ENST00000556929 CACNB3P54284 484 aa11.6□□□□□ -0.55
TMEM260-213ENST00000556929 PTH1RQ03431 593 aa11.6□□□□□ -0.55
TMEM260-213ENST00000556929 FAM151AQ8WW52 585 aa11.6□□□□□ -0.55
TMEM260-213ENST00000556929 OSBPL5Q9H0X9 879 aaPredicted RBP11.6□□□□□ -0.55
TMEM260-213ENST00000556929 GPBP1L1Q9HC44 474 aaPredicted RBP11.6□□□□□ -0.55
TMEM260-213ENST00000556929 MCM9Q9NXL9 1143 aa11.6□□□□□ -0.55
TMEM260-213ENST00000556929 GGA3Q9NZ52 723 aa11.6□□□□□ -0.55
TMEM260-213ENST00000556929 ARPP21Q9UBL0 812 aaPredicted RBP11.6□□□□□ -0.55
TMEM260-213ENST00000556929 COL2A1P02458 1487 aaPredicted RBP11.59□□□□□ -0.55
TMEM260-213ENST00000556929 FGAP02671 866 aa11.59□□□□□ -0.55
TMEM260-213ENST00000556929 POLR3DP05423 398 aaPredicted RBP11.59□□□□□ -0.55
TMEM260-213ENST00000556929 HLA-DOAP06340 250 aa11.59□□□□□ -0.55
TMEM260-213ENST00000556929 TCP10Q12799 353 aa11.59□□□□□ -0.55
TMEM260-213ENST00000556929 NFIAQ12857 509 aa11.59□□□□□ -0.55
TMEM260-213ENST00000556929 IMMTQ16891 758 aaKnown RBP11.59□□□□□ -0.55
TMEM260-213ENST00000556929 SBK1Q52WX2 424 aa11.59□□□□□ -0.55
TMEM260-213ENST00000556929 RNF20Q5VTR2 975 aa11.59□□□□□ -0.55
TMEM260-213ENST00000556929 TTC6Q86TZ1 520 aa11.59□□□□□ -0.55
TMEM260-213ENST00000556929 DHX36Q9H2U1 1008 aaKnown RBP11.59□□□□□ -0.55
TMEM260-213ENST00000556929 EPB41L4AQ9HCS5 686 aaPredicted RBP11.59□□□□□ -0.55
TMEM260-213ENST00000556929 DDX4Q9NQI0 724 aaKnown RBP11.59□□□□□ -0.55
TMEM260-213ENST00000556929 FAM198AQ9UFP1 575 aa11.59□□□□□ -0.55
TMEM260-213ENST00000556929 PPP2R3BQ9Y5P8 575 aa11.59□□□□□ -0.55
TMEM260-213ENST00000556929 RBM8AQ9Y5S9 174 aaKnown RBP11.59□□□□□ -0.55
TMEM260-213ENST00000556929 MINDY4BA8MYZ0 360 aa11.58□□□□□ -0.56
TMEM260-213ENST00000556929 USP17L12C9JPN9 530 aa11.58□□□□□ -0.56
TMEM260-213ENST00000556929 USP17L21D6R901 530 aa11.58□□□□□ -0.56
TMEM260-213ENST00000556929 ZNF213O14771 459 aa11.58□□□□□ -0.56
TMEM260-213ENST00000556929 SEC24BO95487 1268 aa11.58□□□□□ -0.56
TMEM260-213ENST00000556929 SLC3A2P08195 630 aaKnown RBP11.58□□□□□ -0.56
TMEM260-213ENST00000556929 SULF1Q8IWU6 871 aa11.58□□□□□ -0.56
TMEM260-213ENST00000556929 ZSCAN29Q8IWY8 852 aaPredicted RBP11.58□□□□□ -0.56
TMEM260-213ENST00000556929 USP26Q9BXU7 913 aa11.58□□□□□ -0.56
TMEM260-213ENST00000556929 NMRK2Q9NPI5 230 aa11.58□□□□□ -0.56
TMEM260-213ENST00000556929 MKRN1Q9UHC7 482 aaKnown RBP11.58□□□□□ -0.56
TMEM260-213ENST00000556929 PGAP2Q9UHJ9 254 aa11.58□□□□□ -0.56
TMEM260-213ENST00000556929 ASTN2O75129 1339 aaPredicted RBP11.58□□□□□ -0.56
TMEM260-213ENST00000556929 CNTNAP1P78357 1384 aa11.57□□□□□ -0.56
TMEM260-213ENST00000556929 FOXP2O15409 715 aa11.57□□□□□ -0.56
TMEM260-213ENST00000556929 YY1P25490 414 aa11.57□□□□□ -0.56
TMEM260-213ENST00000556929 RASA3Q14644 834 aa11.57□□□□□ -0.56
TMEM260-213ENST00000556929 CTR9Q6PD62 1173 aa11.57□□□□□ -0.56
TMEM260-213ENST00000556929 CDC37L1Q7L3B6 337 aa11.57□□□□□ -0.56
TMEM260-213ENST00000556929 LDHDQ86WU2 507 aa11.57□□□□□ -0.56
TMEM260-213ENST00000556929 HOOK2Q96ED9 719 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms