RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 NEDD4P46934 1319 aa13.91□□□□□ -0.18
CCDC88C-211ENST00000556726 MAGEB6P1A0A0J9YX57 407 aa13.91□□□□□ -0.18
CCDC88C-211ENST00000556726 ADD2P35612 726 aa13.91□□□□□ -0.18
CCDC88C-211ENST00000556726 DNA2P51530 1060 aa13.91□□□□□ -0.18
CCDC88C-211ENST00000556726 RASGRF1Q13972 1273 aa13.91□□□□□ -0.18
CCDC88C-211ENST00000556726 KIF4BQ2VIQ3 1234 aa13.91□□□□□ -0.18
CCDC88C-211ENST00000556726 LPIN2Q92539 896 aa13.91□□□□□ -0.18
CCDC88C-211ENST00000556726 AATFQ9NY61 560 aaKnown RBP eCLIP13.91□□□□□ -0.18
CCDC88C-211ENST00000556726 UTYO14607 1347 aa13.91□□□□□ -0.18
CCDC88C-211ENST00000556726 TMEM232C9JQI7 657 aa13.9□□□□□ -0.18
CCDC88C-211ENST00000556726 G3V3G9 751 aa13.9□□□□□ -0.18
CCDC88C-211ENST00000556726 YEATS4O95619 227 aa13.9□□□□□ -0.18
CCDC88C-211ENST00000556726 CASQ1P31415 396 aa13.9□□□□□ -0.18
CCDC88C-211ENST00000556726 ANTXR2P58335 489 aa13.9□□□□□ -0.18
CCDC88C-211ENST00000556726 DYNLL1P63167 89 aaKnown RBP13.9□□□□□ -0.18
CCDC88C-211ENST00000556726 IQCB1Q15051 598 aa13.9□□□□□ -0.18
CCDC88C-211ENST00000556726 DCAF8Q5TAQ9 597 aa13.9□□□□□ -0.18
CCDC88C-211ENST00000556726 PLA2G4DQ86XP0 818 aa13.9□□□□□ -0.18
CCDC88C-211ENST00000556726 DZIP1Q86YF9 867 aaKnown RBP13.9□□□□□ -0.18
CCDC88C-211ENST00000556726 FMR1NBQ8N0W7 255 aaPredicted RBP13.9□□□□□ -0.18
CCDC88C-211ENST00000556726 ESR2Q92731 530 aa13.9□□□□□ -0.18
CCDC88C-211ENST00000556726 KRT23Q9C075 422 aa13.9□□□□□ -0.18
CCDC88C-211ENST00000556726 MAP3K15Q6ZN16 1313 aa13.9□□□□□ -0.18
CCDC88C-211ENST00000556726 MON2Q7Z3U7 1717 aa13.9□□□□□ -0.18
CCDC88C-211ENST00000556726 A0A0U1RQG5 324 aaPredicted RBP13.9□□□□□ -0.18
CCDC88C-211ENST00000556726 SSBP05455 408 aaKnown RBP eCLIP13.9□□□□□ -0.18
CCDC88C-211ENST00000556726 DDB1Q16531 1140 aa13.9□□□□□ -0.18
CCDC88C-211ENST00000556726 AKNAD1Q5T1N1 836 aa13.9□□□□□ -0.18
CCDC88C-211ENST00000556726 TMCO3Q6UWJ1 677 aa13.9□□□□□ -0.18
CCDC88C-211ENST00000556726 EPC1Q9H2F5 836 aa13.9□□□□□ -0.18
CCDC88C-211ENST00000556726 TRIM75PA6NK02 468 aa13.9□□□□□ -0.18
CCDC88C-211ENST00000556726 ENOX2Q16206 610 aaKnown RBP13.9□□□□□ -0.18
CCDC88C-211ENST00000556726 NUP88Q99567 741 aaPredicted RBP13.9□□□□□ -0.18
CCDC88C-211ENST00000556726 SPATA31A3Q5VYP0 1347 aa13.89□□□□□ -0.19
CCDC88C-211ENST00000556726 NAP1L1P55209 391 aaKnown RBP13.89□□□□□ -0.19
CCDC88C-211ENST00000556726 NCBP1Q09161 790 aaKnown RBP13.89□□□□□ -0.19
CCDC88C-211ENST00000556726 TSGA10IPQ3SY00 556 aa13.89□□□□□ -0.19
CCDC88C-211ENST00000556726 RRAGBQ5VZM2 374 aa13.89□□□□□ -0.19
CCDC88C-211ENST00000556726 ANKRD18AQ8IVF6 992 aa13.89□□□□□ -0.19
CCDC88C-211ENST00000556726 DHX40Q8IX18 779 aaKnown RBP13.89□□□□□ -0.19
CCDC88C-211ENST00000556726 KCNB2Q92953 911 aa13.89□□□□□ -0.19
CCDC88C-211ENST00000556726 MRFAP1L1Q96HT8 127 aa13.89□□□□□ -0.19
CCDC88C-211ENST00000556726 VPS16Q9H269 839 aa13.89□□□□□ -0.19
CCDC88C-211ENST00000556726 RNF41Q9H4P4 317 aaPredicted RBP13.89□□□□□ -0.19
CCDC88C-211ENST00000556726 ZNF335Q9H4Z2 1342 aaPredicted RBP13.89□□□□□ -0.19
CCDC88C-211ENST00000556726 N4BP3O15049 544 aa13.89□□□□□ -0.19
CCDC88C-211ENST00000556726 DPF2Q92785 391 aa13.89□□□□□ -0.19
CCDC88C-211ENST00000556726 ATG3Q9NT62 314 aa13.89□□□□□ -0.19
CCDC88C-211ENST00000556726 C1orf167Q5SNV9 1468 aa13.89□□□□□ -0.19
CCDC88C-211ENST00000556726 AMOTL1Q8IY63 956 aa13.89□□□□□ -0.19
CCDC88C-211ENST00000556726 MB21D2Q8IYB1 491 aaPredicted RBP13.89□□□□□ -0.19
CCDC88C-211ENST00000556726 ZHX3Q9H4I2 956 aa13.89□□□□□ -0.19
CCDC88C-211ENST00000556726 DACH1Q9UI36 760 aa13.89□□□□□ -0.19
CCDC88C-211ENST00000556726 PCDHB6Q9Y5E3 794 aa13.89□□□□□ -0.19
CCDC88C-211ENST00000556726 SLC39A14Q15043 492 aa13.88□□□□□ -0.19
CCDC88C-211ENST00000556726 PIK3AP1Q6ZUJ8 805 aa13.88□□□□□ -0.19
CCDC88C-211ENST00000556726 SPTLC3Q9NUV7 552 aa13.88□□□□□ -0.19
CCDC88C-211ENST00000556726 NCAPD2Q15021 1401 aa13.88□□□□□ -0.19
CCDC88C-211ENST00000556726 USP17L12C9JPN9 530 aa13.88□□□□□ -0.19
CCDC88C-211ENST00000556726 USP17L21D6R901 530 aa13.88□□□□□ -0.19
CCDC88C-211ENST00000556726 CMA1P23946 247 aa13.88□□□□□ -0.19
CCDC88C-211ENST00000556726 ZNF654Q8IZM8 581 aa13.88□□□□□ -0.19
CCDC88C-211ENST00000556726 OXER1Q8TDS5 423 aa13.88□□□□□ -0.19
CCDC88C-211ENST00000556726 MCM9Q9NXL9 1143 aa13.88□□□□□ -0.19
CCDC88C-211ENST00000556726 ZMYM6O95789 1325 aa13.88□□□□□ -0.19
CCDC88C-211ENST00000556726 FAM205CA6NFA0 338 aa13.88□□□□□ -0.19
CCDC88C-211ENST00000556726 PATL2C9JE40 543 aaKnown RBP13.88□□□□□ -0.19
CCDC88C-211ENST00000556726 ZSCAN12O43309 604 aa13.88□□□□□ -0.19
CCDC88C-211ENST00000556726 IPO7O95373 1038 aaKnown RBP13.88□□□□□ -0.19
CCDC88C-211ENST00000556726 GRIN1Q05586 938 aa13.88□□□□□ -0.19
CCDC88C-211ENST00000556726 SUSD4Q5VX71 490 aa13.88□□□□□ -0.19
CCDC88C-211ENST00000556726 NOSTRINQ8IVI9 506 aa13.88□□□□□ -0.19
CCDC88C-211ENST00000556726 TMEM87BQ96K49 555 aa13.88□□□□□ -0.19
CCDC88C-211ENST00000556726 HINFPQ9BQA5 517 aa13.88□□□□□ -0.19
CCDC88C-211ENST00000556726 CEP131Q9UPN4 1083 aa13.88□□□□□ -0.19
CCDC88C-211ENST00000556726 SMIM22K7EJ46 135 aa13.87□□□□□ -0.19
CCDC88C-211ENST00000556726 CIAO1O76071 339 aa13.87□□□□□ -0.19
CCDC88C-211ENST00000556726 GTF2F1P35269 517 aaKnown RBP eCLIP13.87□□□□□ -0.19
CCDC88C-211ENST00000556726 TXLNAP40222 546 aa13.87□□□□□ -0.19
CCDC88C-211ENST00000556726 FAM193AP78312 1265 aa13.87□□□□□ -0.19
CCDC88C-211ENST00000556726 POSTNQ15063 836 aa13.87□□□□□ -0.19
CCDC88C-211ENST00000556726 CDC5LQ99459 802 aaKnown RBP13.87□□□□□ -0.19
CCDC88C-211ENST00000556726 CNNM2Q9H8M5 875 aa13.87□□□□□ -0.19
CCDC88C-211ENST00000556726 GPR108Q9NPR9 543 aa13.87□□□□□ -0.19
CCDC88C-211ENST00000556726 TNKSO95271 1327 aa13.87□□□□□ -0.19
CCDC88C-211ENST00000556726 FAM170AA1A519 330 aa13.87□□□□□ -0.19
CCDC88C-211ENST00000556726 SH2B2O14492 632 aaPredicted RBP13.87□□□□□ -0.19
CCDC88C-211ENST00000556726 ATL3Q6DD88 541 aa13.87□□□□□ -0.19
CCDC88C-211ENST00000556726 USP49Q70CQ1 688 aa13.87□□□□□ -0.19
CCDC88C-211ENST00000556726 BAG1Q99933 345 aaPredicted RBP13.87□□□□□ -0.19
CCDC88C-211ENST00000556726 PIK3C2AO00443 1686 aa13.87□□□□□ -0.19
CCDC88C-211ENST00000556726 WTIPA6NIX2 430 aaPredicted RBP13.87□□□□□ -0.19
CCDC88C-211ENST00000556726 F8W031 263 aaPredicted RBP13.87□□□□□ -0.19
CCDC88C-211ENST00000556726 CASP7P55210 303 aa13.87□□□□□ -0.19
CCDC88C-211ENST00000556726 CAGE1Q8TC20 777 aa13.87□□□□□ -0.19
CCDC88C-211ENST00000556726 SAMSN1Q9NSI8 373 aaKnown RBP13.87□□□□□ -0.19
CCDC88C-211ENST00000556726 POLR3EQ9NVU0 708 aa13.87□□□□□ -0.19
CCDC88C-211ENST00000556726 SAP30BPQ9UHR5 308 aaKnown RBP13.87□□□□□ -0.19
CCDC88C-211ENST00000556726 EIF5P55010 431 aaKnown RBP13.86□□□□□ -0.19
CCDC88C-211ENST00000556726 HEATR3Q7Z4Q2 680 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms