RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 ERVK-24P63145 666 aa7.8□□□□□ -1.16
SCFD1-221ENST00000556534 LMNB2Q03252 620 aa7.8□□□□□ -1.16
SCFD1-221ENST00000556534 PWP1Q13610 501 aa7.8□□□□□ -1.16
SCFD1-221ENST00000556534 LRFN4Q6PJG9 635 aa7.8□□□□□ -1.16
SCFD1-221ENST00000556534 TRIM42Q8IWZ5 723 aa7.8□□□□□ -1.16
SCFD1-221ENST00000556534 FBLIM1Q8WUP2 373 aa7.8□□□□□ -1.16
SCFD1-221ENST00000556534 EZH1Q92800 747 aaPredicted RBP7.8□□□□□ -1.16
SCFD1-221ENST00000556534 MIR1-1HGQ9H1L0 117 aa7.8□□□□□ -1.16
SCFD1-221ENST00000556534 ATXN3LQ9H3M9 355 aa7.8□□□□□ -1.16
SCFD1-221ENST00000556534 C7orf69Q9H7B7 122 aa7.8□□□□□ -1.16
SCFD1-221ENST00000556534 GGT7Q9UJ14 662 aa7.8□□□□□ -1.16
SCFD1-221ENST00000556534 SCAMP3O14828 347 aaKnown RBP7.79□□□□□ -1.16
SCFD1-221ENST00000556534 PF4P02776 101 aa7.79□□□□□ -1.16
SCFD1-221ENST00000556534 NEFMP07197 916 aa7.79□□□□□ -1.16
SCFD1-221ENST00000556534 RAB6AP20340 208 aa7.79□□□□□ -1.16
SCFD1-221ENST00000556534 GARTP22102 1010 aa7.79□□□□□ -1.16
SCFD1-221ENST00000556534 ITGB7P26010 798 aa7.79□□□□□ -1.16
SCFD1-221ENST00000556534 GBP2P32456 591 aaPredicted RBP7.79□□□□□ -1.16
SCFD1-221ENST00000556534 NTF4P34130 210 aa7.79□□□□□ -1.16
SCFD1-221ENST00000556534 ASPAP45381 313 aa7.79□□□□□ -1.16
SCFD1-221ENST00000556534 CDK8P49336 464 aa7.79□□□□□ -1.16
SCFD1-221ENST00000556534 USP11P51784 963 aa7.79□□□□□ -1.16
SCFD1-221ENST00000556534 RING1Q06587 406 aa7.79□□□□□ -1.16
SCFD1-221ENST00000556534 CAMK2GQ13555 558 aaPredicted RBP7.79□□□□□ -1.16
SCFD1-221ENST00000556534 BEND4Q6ZU67 534 aa7.79□□□□□ -1.16
SCFD1-221ENST00000556534 DCDC2CA8MYV0 355 aa7.78□□□□□ -1.16
SCFD1-221ENST00000556534 LMNB1P20700 586 aa7.78□□□□□ -1.16
SCFD1-221ENST00000556534 INPP5AQ14642 412 aa7.78□□□□□ -1.16
SCFD1-221ENST00000556534 TTLL4Q14679 1199 aa7.78□□□□□ -1.16
SCFD1-221ENST00000556534 WIPI1Q5MNZ9 446 aaPredicted RBP7.78□□□□□ -1.16
SCFD1-221ENST00000556534 CLEC10AQ8IUN9 316 aa7.78□□□□□ -1.16
SCFD1-221ENST00000556534 RELL1Q8IUW5 271 aa7.78□□□□□ -1.16
SCFD1-221ENST00000556534 PLPPR2Q96GM1 343 aa7.78□□□□□ -1.16
SCFD1-221ENST00000556534 FAM83CQ9BQN1 747 aa7.78□□□□□ -1.16
SCFD1-221ENST00000556534 KCNF1Q9H3M0 494 aa7.78□□□□□ -1.16
SCFD1-221ENST00000556534 SEMA6CQ9H3T2 930 aa7.78□□□□□ -1.16
SCFD1-221ENST00000556534 KCNQ5Q9NR82 932 aa7.78□□□□□ -1.16
SCFD1-221ENST00000556534 HMX2A2RU54 273 aa7.77□□□□□ -1.17
SCFD1-221ENST00000556534 K7ELQ4 463 aaPredicted RBP7.77□□□□□ -1.17
SCFD1-221ENST00000556534 RBM25P49756 843 aaKnown RBP7.77□□□□□ -1.17
SCFD1-221ENST00000556534 PPM1JQ5JR12 505 aa7.77□□□□□ -1.17
SCFD1-221ENST00000556534 BNC2Q6ZN30 1099 aaPredicted RBP7.77□□□□□ -1.17
SCFD1-221ENST00000556534 CCDC84Q86UT8 332 aaPredicted RBP7.77□□□□□ -1.17
SCFD1-221ENST00000556534 METTL16Q86W50 562 aaKnown RBP7.77□□□□□ -1.17
SCFD1-221ENST00000556534 YIPF2Q9BWQ6 316 aa7.77□□□□□ -1.17
SCFD1-221ENST00000556534 STOML1Q9UBI4 398 aa7.77□□□□□ -1.17
SCFD1-221ENST00000556534 CSADQ9Y600 493 aa7.77□□□□□ -1.17
SCFD1-221ENST00000556534 HCLS1P14317 486 aaPredicted RBP7.76□□□□□ -1.17
SCFD1-221ENST00000556534 FSTP19883 344 aa7.76□□□□□ -1.17
SCFD1-221ENST00000556534 RXRBP28702 533 aa7.76□□□□□ -1.17
SCFD1-221ENST00000556534 FAM160A1Q05DH4 1040 aa7.76□□□□□ -1.17
SCFD1-221ENST00000556534 ZBTB37Q5TC79 503 aa7.76□□□□□ -1.17
SCFD1-221ENST00000556534 CYFIP1Q7L576 1253 aa7.76□□□□□ -1.17
SCFD1-221ENST00000556534 C12orf40Q86WS4 652 aa7.76□□□□□ -1.17
SCFD1-221ENST00000556534 RNF214Q8ND24 703 aa7.76□□□□□ -1.17
SCFD1-221ENST00000556534 ELMO3Q96BJ8 720 aa7.76□□□□□ -1.17
SCFD1-221ENST00000556534 SEMA6BQ9H3T3 888 aa7.76□□□□□ -1.17
SCFD1-221ENST00000556534 PIDD1Q9HB75 910 aa7.76□□□□□ -1.17
SCFD1-221ENST00000556534 FAM95CA0A1B0GW59 222 aa7.75□□□□□ -1.17
SCFD1-221ENST00000556534 FAM221AA4D161 298 aa7.75□□□□□ -1.17
SCFD1-221ENST00000556534 MINDY4BA8MYZ0 360 aa7.75□□□□□ -1.17
SCFD1-221ENST00000556534 DYNC1LI2O43237 492 aaPredicted RBP7.75□□□□□ -1.17
SCFD1-221ENST00000556534 ADAM23O75077 832 aa7.75□□□□□ -1.17
SCFD1-221ENST00000556534 F13A1P00488 732 aa7.75□□□□□ -1.17
SCFD1-221ENST00000556534 NFICP08651 508 aa7.75□□□□□ -1.17
SCFD1-221ENST00000556534 HDLBPQ00341 1268 aaKnown RBP7.75□□□□□ -1.17
SCFD1-221ENST00000556534 RPL6Q02878 288 aaKnown RBP7.75□□□□□ -1.17
SCFD1-221ENST00000556534 SNAP47Q5SQN1 464 aa7.75□□□□□ -1.17
SCFD1-221ENST00000556534 SEZ6L2Q6UXD5 910 aa7.75□□□□□ -1.17
SCFD1-221ENST00000556534 RNF34Q969K3 372 aa7.75□□□□□ -1.17
SCFD1-221ENST00000556534 ISL2Q96A47 359 aa7.75□□□□□ -1.17
SCFD1-221ENST00000556534 ADAMTS1Q9UHI8 967 aa7.75□□□□□ -1.17
SCFD1-221ENST00000556534 DAGLAQ9Y4D2 1042 aa7.75□□□□□ -1.17
SCFD1-221ENST00000556534 GFRA2O00451 464 aa7.74□□□□□ -1.17
SCFD1-221ENST00000556534 CILPO75339 1184 aa7.74□□□□□ -1.17
SCFD1-221ENST00000556534 ZNF394Q53GI3 561 aa7.74□□□□□ -1.17
SCFD1-221ENST00000556534 PRSS36Q5K4E3 855 aa7.74□□□□□ -1.17
SCFD1-221ENST00000556534 RNF43Q68DV7 783 aa7.74□□□□□ -1.17
SCFD1-221ENST00000556534 PAOXQ6QHF9 649 aa7.74□□□□□ -1.17
SCFD1-221ENST00000556534 HDXQ7Z353 690 aa7.74□□□□□ -1.17
SCFD1-221ENST00000556534 UBE3DQ7Z6J8 389 aa7.74□□□□□ -1.17
SCFD1-221ENST00000556534 SMYD4Q8IYR2 804 aaPredicted RBP7.74□□□□□ -1.17
SCFD1-221ENST00000556534 GOLM1Q8NBJ4 401 aa7.74□□□□□ -1.17
SCFD1-221ENST00000556534 GATAD2BQ8WXI9 593 aa7.74□□□□□ -1.17
SCFD1-221ENST00000556534 JARID2Q92833 1246 aaPredicted RBP7.74□□□□□ -1.17
SCFD1-221ENST00000556534 PRKAG2Q9UGJ0 569 aa7.74□□□□□ -1.17
SCFD1-221ENST00000556534 PCDHGB7Q9Y5F8 929 aa7.74□□□□□ -1.17
SCFD1-221ENST00000556534 SNCAIPQ9Y6H5 919 aa7.74□□□□□ -1.17
SCFD1-221ENST00000556534 PRAMEF27A3QJZ7 478 aa7.73□□□□□ -1.17
SCFD1-221ENST00000556534 FANCGO15287 622 aa7.73□□□□□ -1.17
SCFD1-221ENST00000556534 EIF4A3P38919 411 aaKnown RBP7.73□□□□□ -1.17
SCFD1-221ENST00000556534 NFIAQ12857 509 aa7.73□□□□□ -1.17
SCFD1-221ENST00000556534 MAP7Q14244 749 aa7.73□□□□□ -1.17
SCFD1-221ENST00000556534 FBXL19Q6PCT2 694 aa7.73□□□□□ -1.17
SCFD1-221ENST00000556534 USP48Q86UV5 1035 aa7.73□□□□□ -1.17
SCFD1-221ENST00000556534 GATA6Q92908 595 aa7.73□□□□□ -1.17
SCFD1-221ENST00000556534 DBNDD2Q9BQY9 259 aa7.73□□□□□ -1.17
SCFD1-221ENST00000556534 GREM1O60565 184 aa7.72□□□□□ -1.17
SCFD1-221ENST00000556534 IGLV1-40P01703 118 aa7.72□□□□□ -1.17
SCFD1-221ENST00000556534 NFKBIBQ15653 356 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms