RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 NEMFO60524 1076 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 GYG1P46976 350 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 WDR44Q5JSH3 913 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 MYL10Q9BUA6 226 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 KCNQ3O43525 872 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 SORBS3O60504 671 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 FERP16591 822 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 GNG11P61952 73 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 DCAF15Q66K64 600 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 NEK11Q8NG66 645 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 RNF216Q9NWF9 866 aaPredicted RBP9.26□□□□□ -0.93
SYNE2-220ENST00000555612 SHROOM2Q13796 1616 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 NPHP4O75161 1426 aaPredicted RBP9.26□□□□□ -0.93
SYNE2-220ENST00000555612 YEATS2Q9ULM3 1422 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 PLEKHG3A1L390 1219 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 CCDC66A2RUB6 948 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 SLC8A3P57103 927 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 TRPC3Q13507 836 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 PLEKHM2Q8IWE5 1019 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 IQUBQ8NA54 791 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 EHBP1Q8NDI1 1231 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 TMEM87BQ96K49 555 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 DEXIO95424 95 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 ATP2B4P23634 1241 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 RPL13P26373 211 aaKnown RBP9.26□□□□□ -0.93
SYNE2-220ENST00000555612 TFAP4Q01664 338 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 HAUS3Q68CZ6 603 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 TTLL7Q6ZT98 887 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.26□□□□□ -0.93
SYNE2-220ENST00000555612 KIAA0232Q92628 1395 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 CRKLP46109 303 aaKnown RBP9.26□□□□□ -0.93
SYNE2-220ENST00000555612 RNF169Q8NCN4 708 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 GLG1Q92896 1179 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 ZMYND15Q9H091 742 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 CHL1O00533 1208 aa9.25□□□□□ -0.93
SYNE2-220ENST00000555612 DKC1O60832 514 aaKnown RBP eCLIP9.25□□□□□ -0.93
SYNE2-220ENST00000555612 DNM2P50570 870 aa9.25□□□□□ -0.93
SYNE2-220ENST00000555612 ZSCAN30Q86W11 494 aa9.25□□□□□ -0.93
SYNE2-220ENST00000555612 ZBTB40Q9NUA8 1239 aa9.25□□□□□ -0.93
SYNE2-220ENST00000555612 UBXN1Q04323 297 aa9.25□□□□□ -0.93
SYNE2-220ENST00000555612 SNW1Q13573 536 aaKnown RBP9.25□□□□□ -0.93
SYNE2-220ENST00000555612 BRAPQ7Z569 592 aa9.25□□□□□ -0.93
SYNE2-220ENST00000555612 NACA2Q9H009 215 aa9.25□□□□□ -0.93
SYNE2-220ENST00000555612 DNAJC25Q9H1X3 360 aa9.25□□□□□ -0.93
SYNE2-220ENST00000555612 TRAF5O00463 557 aa9.25□□□□□ -0.93
SYNE2-220ENST00000555612 ZNF335Q9H4Z2 1342 aaPredicted RBP9.25□□□□□ -0.93
SYNE2-220ENST00000555612 FAM227BQ96M60 508 aa9.25□□□□□ -0.93
SYNE2-220ENST00000555612 GLT8D2Q9H1C3 349 aa9.25□□□□□ -0.93
SYNE2-220ENST00000555612 GOLGA6L9A6NEM1 432 aa9.24□□□□□ -0.93
SYNE2-220ENST00000555612 PPEF1O14829 653 aaPredicted RBP9.24□□□□□ -0.93
SYNE2-220ENST00000555612 RRP9O43818 475 aaKnown RBP9.24□□□□□ -0.93
SYNE2-220ENST00000555612 ALAS1P13196 640 aa9.24□□□□□ -0.93
SYNE2-220ENST00000555612 NCAPG2Q86XI2 1143 aa9.24□□□□□ -0.93
SYNE2-220ENST00000555612 NEO1Q92859 1461 aa9.24□□□□□ -0.93
SYNE2-220ENST00000555612 CAVIN2O95810 425 aa9.24□□□□□ -0.93
SYNE2-220ENST00000555612 EPB41P11171 864 aaKnown RBP9.24□□□□□ -0.93
SYNE2-220ENST00000555612 PRPHP41219 470 aa9.24□□□□□ -0.93
SYNE2-220ENST00000555612 NEURL1BA8MQ27 555 aa9.24□□□□□ -0.93
SYNE2-220ENST00000555612 OTUD7AQ8TE49 926 aaPredicted RBP9.24□□□□□ -0.93
SYNE2-220ENST00000555612 MLXIPQ9HAP2 919 aa9.24□□□□□ -0.93
SYNE2-220ENST00000555612 SHTN1A0MZ66 631 aa9.24□□□□□ -0.93
SYNE2-220ENST00000555612 NCOA5Q9HCD5 579 aaKnown RBP9.24□□□□□ -0.93
SYNE2-220ENST00000555612 ASAP1Q9ULH1 1129 aa9.24□□□□□ -0.93
SYNE2-220ENST00000555612 ANGEL1Q9UNK9 670 aaKnown RBP9.24□□□□□ -0.93
SYNE2-220ENST00000555612 hCG_1642624A0A1W2PR95 340 aa9.24□□□□□ -0.93
SYNE2-220ENST00000555612 CLRN2A0PK11 232 aa9.24□□□□□ -0.93
SYNE2-220ENST00000555612 TESPA1A2RU30 521 aaPredicted RBP9.24□□□□□ -0.93
SYNE2-220ENST00000555612 KRT9P35527 623 aa9.24□□□□□ -0.93
SYNE2-220ENST00000555612 PLCD1P51178 756 aa9.24□□□□□ -0.93
SYNE2-220ENST00000555612 PABPC4Q13310 644 aaKnown RBP eCLIP9.24□□□□□ -0.93
SYNE2-220ENST00000555612 SEPT12Q8IYM1 358 aa9.24□□□□□ -0.93
SYNE2-220ENST00000555612 GOLGA1Q92805 767 aa9.24□□□□□ -0.93
SYNE2-220ENST00000555612 IQCGQ9H095 443 aaKnown RBP9.24□□□□□ -0.93
SYNE2-220ENST00000555612 NDC80O14777 642 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 SLC27A2O14975 620 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 STX10O60499 249 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 NONOQ15233 471 aaKnown RBP eCLIP9.23□□□□□ -0.93
SYNE2-220ENST00000555612 OTUD7BQ6GQQ9 843 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 EXOC7Q9UPT5 735 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 PDE4DQ08499 809 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 CHURC1Q8WUH1 139 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 SELENOOQ9BVL4 669 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 ATP6V0A2Q9Y487 856 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 SERPINB2P05120 415 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 KRT19P08727 400 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 RPS6KB1P23443 525 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 BCAMP50895 628 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 CDAN1Q8IWY9 1227 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 KBTBD3Q8NAB2 608 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 CCDC42Q96M95 316 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 IBTKQ9P2D0 1353 aaPredicted RBP9.23□□□□□ -0.93
SYNE2-220ENST00000555612 ARHGEF5Q12774 1597 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 A0A1W2PRG0 241 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 PDCL2Q8N4E4 241 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 METTL13Q8N6R0 699 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 ZBTB7BO15156 539 aaPredicted RBP9.23□□□□□ -0.93
SYNE2-220ENST00000555612 BTDP43251 543 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 RAD51AP2Q09MP3 1159 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 ARHGEF16Q5VV41 709 aa9.23□□□□□ -0.93
SYNE2-220ENST00000555612 NLRX1Q86UT6 975 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms