RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 NECAB2Q7Z6G3 386 aa16.31■□□□□ 0.2
VPS29-211ENST00000553128 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.31■□□□□ 0.2
VPS29-211ENST00000553128 IL16Q14005 1332 aa16.3■□□□□ 0.2
VPS29-211ENST00000553128 PDE8BO95263 885 aa16.3■□□□□ 0.2
VPS29-211ENST00000553128 TRIM32Q13049 653 aa16.3■□□□□ 0.2
VPS29-211ENST00000553128 LRIT3Q3SXY7 679 aa16.3■□□□□ 0.2
VPS29-211ENST00000553128 CCDC184Q52MB2 194 aa16.3■□□□□ 0.2
VPS29-211ENST00000553128 SLC4A10Q6U841 1118 aa16.3■□□□□ 0.2
VPS29-211ENST00000553128 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.3■□□□□ 0.2
VPS29-211ENST00000553128 BICC1Q9H694 974 aaKnown RBP16.3■□□□□ 0.2
VPS29-211ENST00000553128 SPINK5Q9NQ38 1064 aaPredicted RBP16.3■□□□□ 0.2
VPS29-211ENST00000553128 SUGT1Q9Y2Z0 365 aa16.3■□□□□ 0.2
VPS29-211ENST00000553128 AFG3L2Q9Y4W6 797 aa16.3■□□□□ 0.2
VPS29-211ENST00000553128 PTPRAP18433 802 aa16.29■□□□□ 0.2
VPS29-211ENST00000553128 FASTKD5Q7L8L6 764 aaKnown RBP16.29■□□□□ 0.2
VPS29-211ENST00000553128 CCDC84Q86UT8 332 aaPredicted RBP16.29■□□□□ 0.2
VPS29-211ENST00000553128 SCYL3Q8IZE3 742 aa16.29■□□□□ 0.2
VPS29-211ENST00000553128 ANKRD13CQ8N6S4 541 aa16.29■□□□□ 0.2
VPS29-211ENST00000553128 ANKRD44Q8N8A2 993 aa16.29■□□□□ 0.2
VPS29-211ENST00000553128 ALDH1L1O75891 902 aa16.28■□□□□ 0.2
VPS29-211ENST00000553128 FGFR2P21802 821 aa16.28■□□□□ 0.2
VPS29-211ENST00000553128 PRDX5P30044 214 aa16.28■□□□□ 0.2
VPS29-211ENST00000553128 TDHQ8IZJ6 230 aa16.28■□□□□ 0.2
VPS29-211ENST00000553128 CACNA1FO60840 1977 aa16.27■□□□□ 0.2
VPS29-211ENST00000553128 AK9Q5TCS8 1911 aa16.27■□□□□ 0.2
VPS29-211ENST00000553128 RABL6Q3YEC7 729 aaPredicted RBP16.27■□□□□ 0.2
VPS29-211ENST00000553128 TREML2Q5T2D2 321 aa16.27■□□□□ 0.2
VPS29-211ENST00000553128 SH3BP5LQ7L8J4 393 aa16.27■□□□□ 0.2
VPS29-211ENST00000553128 SMCR8Q8TEV9 937 aaPredicted RBP16.27■□□□□ 0.2
VPS29-211ENST00000553128 SRCIN1Q9C0H9 1055 aa16.27■□□□□ 0.2
VPS29-211ENST00000553128 USP40Q9NVE5 1235 aa16.27■□□□□ 0.2
VPS29-211ENST00000553128 SLC45A1Q9Y2W3 748 aa16.27■□□□□ 0.2
VPS29-211ENST00000553128 DOCK3Q8IZD9 2030 aa16.27■□□□□ 0.2
VPS29-211ENST00000553128 PRUNE2Q8WUY3 3088 aa16.26■□□□□ 0.19
VPS29-211ENST00000553128 TRIM75PA6NK02 468 aa16.26■□□□□ 0.19
VPS29-211ENST00000553128 CAPN2P17655 700 aa16.26■□□□□ 0.19
VPS29-211ENST00000553128 COA7Q96BR5 231 aa16.26■□□□□ 0.19
VPS29-211ENST00000553128 PICK1Q9NRD5 415 aa16.26■□□□□ 0.19
VPS29-211ENST00000553128 DNAH12Q6ZR08 3092 aa16.26■□□□□ 0.19
VPS29-211ENST00000553128 DDX60LQ5H9U9 1706 aaKnown RBP16.25■□□□□ 0.19
VPS29-211ENST00000553128 UTYO14607 1347 aa16.25■□□□□ 0.19
VPS29-211ENST00000553128 RGS3P49796 1198 aa16.25■□□□□ 0.19
VPS29-211ENST00000553128 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.25■□□□□ 0.19
VPS29-211ENST00000553128 ANKLE1Q8NAG6 615 aa16.25■□□□□ 0.19
VPS29-211ENST00000553128 WDR66Q8TBY9 1149 aa16.25■□□□□ 0.19
VPS29-211ENST00000553128 UBE2OQ9C0C9 1292 aaKnown RBP16.25■□□□□ 0.19
VPS29-211ENST00000553128 NBPF3Q9H094 633 aa16.25■□□□□ 0.19
VPS29-211ENST00000553128 SALL2Q9Y467 1007 aaPredicted RBP16.25■□□□□ 0.19
VPS29-211ENST00000553128 PTPRFP10586 1907 aa16.25■□□□□ 0.19
VPS29-211ENST00000553128 PHIPQ8WWQ0 1821 aa16.24■□□□□ 0.19
VPS29-211ENST00000553128 PFASO15067 1338 aa16.24■□□□□ 0.19
VPS29-211ENST00000553128 KIF16BQ96L93 1317 aa16.24■□□□□ 0.19
VPS29-211ENST00000553128 PUM3Q15397 648 aaKnown RBP16.24■□□□□ 0.19
VPS29-211ENST00000553128 GUCD1Q96NT3 240 aa16.24■□□□□ 0.19
VPS29-211ENST00000553128 C11orf49Q9H6J7 331 aa16.24■□□□□ 0.19
VPS29-211ENST00000553128 GJD2Q9UKL4 321 aa16.24■□□□□ 0.19
VPS29-211ENST00000553128 AGTPBP1Q9UPW5 1226 aa16.24■□□□□ 0.19
VPS29-211ENST00000553128 DDTLA6NHG4 134 aaPredicted RBP16.23■□□□□ 0.19
VPS29-211ENST00000553128 HMGCRP04035 888 aa16.23■□□□□ 0.19
VPS29-211ENST00000553128 IFIT1P09914 478 aaKnown RBP16.23■□□□□ 0.19
VPS29-211ENST00000553128 FAM110CQ1W6H9 321 aa16.23■□□□□ 0.19
VPS29-211ENST00000553128 DOCK2Q92608 1830 aa16.23■□□□□ 0.19
VPS29-211ENST00000553128 RFX7Q2KHR2 1363 aa16.23■□□□□ 0.19
VPS29-211ENST00000553128 CDH23Q9H251 3354 aa16.23■□□□□ 0.19
VPS29-211ENST00000553128 RPTORQ8N122 1335 aa16.22■□□□□ 0.19
VPS29-211ENST00000553128 ZEB1P37275 1124 aaPredicted RBP16.22■□□□□ 0.19
VPS29-211ENST00000553128 MAP3K10Q02779 954 aa16.22■□□□□ 0.19
VPS29-211ENST00000553128 HMX1Q9NP08 348 aaPredicted RBP16.22■□□□□ 0.19
VPS29-211ENST00000553128 DDX4Q9NQI0 724 aaKnown RBP16.22■□□□□ 0.19
VPS29-211ENST00000553128 OGDHLQ9ULD0 1010 aa16.22■□□□□ 0.19
VPS29-211ENST00000553128 LDHBP07195 334 aaKnown RBP16.21■□□□□ 0.19
VPS29-211ENST00000553128 TRIB2Q92519 343 aa16.21■□□□□ 0.19
VPS29-211ENST00000553128 FAM161BQ96MY7 647 aa16.21■□□□□ 0.19
VPS29-211ENST00000553128 IDI2Q9BXS1 227 aa16.21■□□□□ 0.19
VPS29-211ENST00000553128 LRRFIP2Q9Y608 721 aaKnown RBP16.21■□□□□ 0.19
VPS29-211ENST00000553128 MYH13Q9UKX3 1938 aa16.21■□□□□ 0.19
VPS29-211ENST00000553128 DOCK1Q14185 1865 aa16.2■□□□□ 0.18
VPS29-211ENST00000553128 FAM196BA6NMK8 535 aa16.2■□□□□ 0.18
VPS29-211ENST00000553128 POTEB2H3BUK9 544 aa16.2■□□□□ 0.18
VPS29-211ENST00000553128 PEX10O60683 326 aa16.2■□□□□ 0.18
VPS29-211ENST00000553128 ENTPD3O75355 529 aa16.2■□□□□ 0.18
VPS29-211ENST00000553128 SLC5A1P13866 664 aa16.2■□□□□ 0.18
VPS29-211ENST00000553128 RFX5P48382 616 aaPredicted RBP16.2■□□□□ 0.18
VPS29-211ENST00000553128 MDM2Q00987 491 aaPredicted RBP16.2■□□□□ 0.18
VPS29-211ENST00000553128 ZSCAN29Q8IWY8 852 aaPredicted RBP16.2■□□□□ 0.18
VPS29-211ENST00000553128 LPIN2Q92539 896 aa16.2■□□□□ 0.18
VPS29-211ENST00000553128 PLXNB2O15031 1838 aa16.19■□□□□ 0.18
VPS29-211ENST00000553128 CTNND1O60716 968 aaKnown RBP16.19■□□□□ 0.18
VPS29-211ENST00000553128 PICALMQ13492 652 aa16.19■□□□□ 0.18
VPS29-211ENST00000553128 LRRC26Q2I0M4 334 aa16.19■□□□□ 0.18
VPS29-211ENST00000553128 MUC3AQ02505 3323 aa16.19■□□□□ 0.18
VPS29-211ENST00000553128 EYA2O00167 538 aa16.18■□□□□ 0.18
VPS29-211ENST00000553128 COL6A1P12109 1028 aa16.18■□□□□ 0.18
VPS29-211ENST00000553128 CYP2B6P20813 491 aa16.18■□□□□ 0.18
VPS29-211ENST00000553128 MAP3K21Q5TCX8 1036 aa16.18■□□□□ 0.18
VPS29-211ENST00000553128 ATG9AQ7Z3C6 839 aa16.18■□□□□ 0.18
VPS29-211ENST00000553128 WDR63Q8IWG1 891 aa16.18■□□□□ 0.18
VPS29-211ENST00000553128 PNMA3Q9UL41 463 aa16.18■□□□□ 0.18
VPS29-211ENST00000553128 GAKO14976 1311 aa16.18■□□□□ 0.18
VPS29-211ENST00000553128 PRKAR2AP13861 404 aaKnown RBP16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms