RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 TOP1P11387 765 aaKnown RBP15.78■□□□□ 0.12
VPS33A-208ENST00000543633 GNL2Q13823 731 aaKnown RBP15.78■□□□□ 0.12
VPS33A-208ENST00000543633 TRIM65Q6PJ69 517 aa15.78■□□□□ 0.12
VPS33A-208ENST00000543633 ZNF446Q9NWS9 450 aa15.78■□□□□ 0.12
VPS33A-208ENST00000543633 ATP1A3P13637 1013 aa15.78■□□□□ 0.12
VPS33A-208ENST00000543633 MARCKSP29966 332 aaPredicted RBP15.78■□□□□ 0.12
VPS33A-208ENST00000543633 NTRK3Q16288 839 aa15.78■□□□□ 0.12
VPS33A-208ENST00000543633 ERCC6LQ2NKX8 1250 aa15.78■□□□□ 0.12
VPS33A-208ENST00000543633 CFAP100Q494V2 611 aa15.78■□□□□ 0.12
VPS33A-208ENST00000543633 METTL16Q86W50 562 aaKnown RBP15.78■□□□□ 0.12
VPS33A-208ENST00000543633 TBC1D10CQ8IV04 446 aa15.78■□□□□ 0.12
VPS33A-208ENST00000543633 REXO1L1PQ8IX06 675 aa15.78■□□□□ 0.12
VPS33A-208ENST00000543633 TRIML1Q8N9V2 468 aa15.78■□□□□ 0.12
VPS33A-208ENST00000543633 MTA3Q9BTC8 594 aa15.78■□□□□ 0.12
VPS33A-208ENST00000543633 TEX13AQ9BXU3 409 aaPredicted RBP15.78■□□□□ 0.12
VPS33A-208ENST00000543633 TADA3O75528 432 aa15.77■□□□□ 0.12
VPS33A-208ENST00000543633 IL2RBP14784 551 aa15.77■□□□□ 0.12
VPS33A-208ENST00000543633 IARSP41252 1262 aaKnown RBP15.77■□□□□ 0.12
VPS33A-208ENST00000543633 MCAMP43121 646 aa15.77■□□□□ 0.12
VPS33A-208ENST00000543633 TBX2Q13207 712 aaPredicted RBP15.77■□□□□ 0.12
VPS33A-208ENST00000543633 CT47A1Q5JQC4 288 aaPredicted RBP15.77■□□□□ 0.12
VPS33A-208ENST00000543633 CYB5R4Q7L1T6 521 aa15.77■□□□□ 0.12
VPS33A-208ENST00000543633 KRI1Q8N9T8 703 aaKnown RBP15.77■□□□□ 0.12
VPS33A-208ENST00000543633 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.77■□□□□ 0.12
VPS33A-208ENST00000543633 KCNH3Q9ULD8 1083 aa15.77■□□□□ 0.12
VPS33A-208ENST00000543633 RIPOR2Q9Y4F9 1068 aa15.77■□□□□ 0.12
VPS33A-208ENST00000543633 NRAPQ86VF7 1730 aa15.77■□□□□ 0.11
VPS33A-208ENST00000543633 UQCRFS1P1P0C7P4 283 aa15.77■□□□□ 0.11
VPS33A-208ENST00000543633 ARID4AP29374 1257 aaPredicted RBP15.77■□□□□ 0.11
VPS33A-208ENST00000543633 CLCN6P51797 869 aa15.77■□□□□ 0.11
VPS33A-208ENST00000543633 RCAN1P53805 252 aa15.77■□□□□ 0.11
VPS33A-208ENST00000543633 NT5DC1Q5TFE4 455 aa15.77■□□□□ 0.11
VPS33A-208ENST00000543633 KIF6Q6ZMV9 814 aa15.77■□□□□ 0.11
VPS33A-208ENST00000543633 TMEM139Q8IV31 216 aa15.77■□□□□ 0.11
VPS33A-208ENST00000543633 MNS1Q8NEH6 495 aa15.77■□□□□ 0.11
VPS33A-208ENST00000543633 UBXN4Q92575 508 aa15.77■□□□□ 0.11
VPS33A-208ENST00000543633 GJB4Q9NTQ9 266 aa15.77■□□□□ 0.11
VPS33A-208ENST00000543633 MYO5AQ9Y4I1 1855 aaKnown RBP15.76■□□□□ 0.11
VPS33A-208ENST00000543633 GOLGA8AA7E2F4 631 aa15.76■□□□□ 0.11
VPS33A-208ENST00000543633 STX10O60499 249 aa15.76■□□□□ 0.11
VPS33A-208ENST00000543633 ZRANB2O95218 330 aaKnown RBP eCLIP15.76■□□□□ 0.11
VPS33A-208ENST00000543633 ADAMTS2O95450 1211 aa15.76■□□□□ 0.11
VPS33A-208ENST00000543633 PNOCQ13519 176 aa15.76■□□□□ 0.11
VPS33A-208ENST00000543633 ARHGAP29Q52LW3 1261 aa15.76■□□□□ 0.11
VPS33A-208ENST00000543633 METTL24Q5JXM2 366 aa15.76■□□□□ 0.11
VPS33A-208ENST00000543633 ZNF579Q8NAF0 562 aaKnown RBP15.76■□□□□ 0.11
VPS33A-208ENST00000543633 MLKLQ8NB16 471 aa15.76■□□□□ 0.11
VPS33A-208ENST00000543633 CNNM3Q8NE01 707 aa15.76■□□□□ 0.11
VPS33A-208ENST00000543633 IGDCC4Q8TDY8 1250 aa15.76■□□□□ 0.11
VPS33A-208ENST00000543633 CNNM2Q9H8M5 875 aa15.76■□□□□ 0.11
VPS33A-208ENST00000543633 LY9Q9HBG7 655 aa15.76■□□□□ 0.11
VPS33A-208ENST00000543633 FHOD1Q9Y613 1164 aa15.76■□□□□ 0.11
VPS33A-208ENST00000543633 UBN2Q6ZU65 1347 aa15.76■□□□□ 0.11
VPS33A-208ENST00000543633 FMNL1O95466 1100 aaPredicted RBP15.75■□□□□ 0.11
VPS33A-208ENST00000543633 CDC27P30260 824 aa15.75■□□□□ 0.11
VPS33A-208ENST00000543633 MDM2Q00987 491 aaPredicted RBP15.75■□□□□ 0.11
VPS33A-208ENST00000543633 KANK3Q6NY19 840 aa15.75■□□□□ 0.11
VPS33A-208ENST00000543633 ENOX1Q8TC92 643 aaKnown RBP15.75■□□□□ 0.11
VPS33A-208ENST00000543633 DPF2Q92785 391 aa15.75■□□□□ 0.11
VPS33A-208ENST00000543633 TBC1D2BQ9UPU7 963 aa15.75■□□□□ 0.11
VPS33A-208ENST00000543633 DISP2A7MBM2 1401 aa15.75■□□□□ 0.11
VPS33A-208ENST00000543633 PNMA6AP0CW24 399 aaPredicted RBP15.75■□□□□ 0.11
VPS33A-208ENST00000543633 IFNAR1P17181 557 aa15.75■□□□□ 0.11
VPS33A-208ENST00000543633 SSRP1Q08945 709 aaKnown RBP15.75■□□□□ 0.11
VPS33A-208ENST00000543633 HSP90AB3PQ58FF7 597 aa15.75■□□□□ 0.11
VPS33A-208ENST00000543633 SLC9C2Q5TAH2 1124 aa15.75■□□□□ 0.11
VPS33A-208ENST00000543633 NOSTRINQ8IVI9 506 aa15.75■□□□□ 0.11
VPS33A-208ENST00000543633 VGLL2Q8N8G2 317 aa15.75■□□□□ 0.11
VPS33A-208ENST00000543633 AIFM3Q96NN9 605 aa15.75■□□□□ 0.11
VPS33A-208ENST00000543633 PPP2R2CQ9Y2T4 447 aa15.75■□□□□ 0.11
VPS33A-208ENST00000543633 PCDHA5Q9Y5H7 936 aa15.75■□□□□ 0.11
VPS33A-208ENST00000543633 PARP3Q9Y6F1 533 aa15.75■□□□□ 0.11
VPS33A-208ENST00000543633 RANBP6O60518 1105 aaKnown RBP15.74■□□□□ 0.11
VPS33A-208ENST00000543633 ZNF18P17022 549 aa15.74■□□□□ 0.11
VPS33A-208ENST00000543633 SAFBQ15424 915 aaKnown RBP eCLIP15.74■□□□□ 0.11
VPS33A-208ENST00000543633 TMCO3Q6UWJ1 677 aa15.74■□□□□ 0.11
VPS33A-208ENST00000543633 FOXP1Q9H334 677 aaPredicted RBP15.74■□□□□ 0.11
VPS33A-208ENST00000543633 FAM217BQ9NTX9 383 aaPredicted RBP15.74■□□□□ 0.11
VPS33A-208ENST00000543633 BCORQ6W2J9 1755 aa15.74■□□□□ 0.11
VPS33A-208ENST00000543633 TCRBV5S4A2TA0A5A2 114 aa15.73■□□□□ 0.11
VPS33A-208ENST00000543633 SLIT2O94813 1529 aa15.73■□□□□ 0.11
VPS33A-208ENST00000543633 PTPREP23469 700 aa15.73■□□□□ 0.11
VPS33A-208ENST00000543633 RILPL1Q5EBL4 403 aa15.73■□□□□ 0.11
VPS33A-208ENST00000543633 TMEM67Q5HYA8 995 aa15.73■□□□□ 0.11
VPS33A-208ENST00000543633 MICU3Q86XE3 530 aa15.73■□□□□ 0.11
VPS33A-208ENST00000543633 RAB11FIP4Q86YS3 637 aa15.73■□□□□ 0.11
VPS33A-208ENST00000543633 UTP14AQ9BVJ6 771 aaKnown RBP15.73■□□□□ 0.11
VPS33A-208ENST00000543633 INTS13Q9NVM9 706 aa15.73■□□□□ 0.11
VPS33A-208ENST00000543633 FANCLQ9NW38 375 aa15.73■□□□□ 0.11
VPS33A-208ENST00000543633 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.73■□□□□ 0.11
VPS33A-208ENST00000543633 ANKRD18BA2A2Z9 1011 aa15.73■□□□□ 0.11
VPS33A-208ENST00000543633 VWA3AA6NCI4 1184 aa15.73■□□□□ 0.11
VPS33A-208ENST00000543633 NUTM2BA6NNL0 878 aaPredicted RBP15.73■□□□□ 0.11
VPS33A-208ENST00000543633 NUTM2EB1AL46 878 aaPredicted RBP15.73■□□□□ 0.11
VPS33A-208ENST00000543633 B4E1Z4 1266 aa15.73■□□□□ 0.11
VPS33A-208ENST00000543633 MMP1P03956 469 aa15.73■□□□□ 0.11
VPS33A-208ENST00000543633 PDE6AP16499 860 aa15.73■□□□□ 0.11
VPS33A-208ENST00000543633 SARSP49591 514 aaKnown RBP15.73■□□□□ 0.11
VPS33A-208ENST00000543633 POSTNQ15063 836 aa15.73■□□□□ 0.11
VPS33A-208ENST00000543633 LONRF3Q496Y0 759 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms