RNA–Protein interactions for RNA: ENST00000542786.1

LDB3-207, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 1,889 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-207ENST00000542786 KIF28PB7ZC32 967 aa16.54■□□□□ 0.24
LDB3-207ENST00000542786 IGSF3O75054 1194 aa16.54■□□□□ 0.24
LDB3-207ENST00000542786 GPSM2P81274 684 aa16.54■□□□□ 0.24
LDB3-207ENST00000542786 CHAF1AQ13111 956 aaPredicted RBP16.54■□□□□ 0.24
LDB3-207ENST00000542786 ZNF396Q96N95 335 aaPredicted RBP16.54■□□□□ 0.24
LDB3-207ENST00000542786 AIFM3Q96NN9 605 aa16.54■□□□□ 0.24
LDB3-207ENST00000542786 MYL10Q9BUA6 226 aa16.54■□□□□ 0.24
LDB3-207ENST00000542786 RRAGDQ9NQL2 400 aaPredicted RBP16.54■□□□□ 0.24
LDB3-207ENST00000542786 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.54■□□□□ 0.24
LDB3-207ENST00000542786 DLEC1Q9Y238 1755 aa16.54■□□□□ 0.24
LDB3-207ENST00000542786 CYP2D7A0A087X1C5 515 aa16.54■□□□□ 0.24
LDB3-207ENST00000542786 CDKL5O76039 1030 aa16.54■□□□□ 0.24
LDB3-207ENST00000542786 KIF23Q02241 960 aaPredicted RBP16.54■□□□□ 0.24
LDB3-207ENST00000542786 CTR9Q6PD62 1173 aa16.54■□□□□ 0.24
LDB3-207ENST00000542786 RNF214Q8ND24 703 aa16.54■□□□□ 0.24
LDB3-207ENST00000542786 CLSTN2Q9H4D0 955 aa16.54■□□□□ 0.24
LDB3-207ENST00000542786 DACT1Q9NYF0 836 aa16.54■□□□□ 0.24
LDB3-207ENST00000542786 RTEL1Q9NZ71 1219 aa16.54■□□□□ 0.24
LDB3-207ENST00000542786 CCDC88AQ3V6T2 1871 aa16.54■□□□□ 0.24
LDB3-207ENST00000542786 ANKRD31Q8N7Z5 1873 aa16.54■□□□□ 0.24
LDB3-207ENST00000542786 NPHP1O15259 732 aa16.53■□□□□ 0.24
LDB3-207ENST00000542786 ST5P78524 1137 aa16.53■□□□□ 0.24
LDB3-207ENST00000542786 RRP12Q5JTH9 1297 aaKnown RBP16.53■□□□□ 0.24
LDB3-207ENST00000542786 DDX19AQ9NUU7 478 aaKnown RBP16.53■□□□□ 0.24
LDB3-207ENST00000542786 SLC12A7Q9Y666 1083 aa16.53■□□□□ 0.24
LDB3-207ENST00000542786 MINDY4BA8MYZ0 360 aa16.52■□□□□ 0.24
LDB3-207ENST00000542786 IFNAR1P17181 557 aa16.52■□□□□ 0.24
LDB3-207ENST00000542786 ZNF827Q17R98 1081 aa16.52■□□□□ 0.24
LDB3-207ENST00000542786 NFXL1Q6ZNB6 911 aa16.52■□□□□ 0.24
LDB3-207ENST00000542786 BRAPQ7Z569 592 aa16.52■□□□□ 0.24
LDB3-207ENST00000542786 RPGRQ92834 1020 aaKnown RBP16.52■□□□□ 0.24
LDB3-207ENST00000542786 PHKBQ93100 1093 aa16.52■□□□□ 0.24
LDB3-207ENST00000542786 ALG1Q9BT22 464 aa16.52■□□□□ 0.24
LDB3-207ENST00000542786 NUP62CLQ9H1M0 184 aa16.52■□□□□ 0.24
LDB3-207ENST00000542786 DCP1AQ9NPI6 582 aaPredicted RBP16.52■□□□□ 0.24
LDB3-207ENST00000542786 ANKIB1Q9P2G1 1089 aa16.52■□□□□ 0.24
LDB3-207ENST00000542786 NR1I2O75469 434 aa16.52■□□□□ 0.23
LDB3-207ENST00000542786 PCP11498 1178 aaKnown RBP16.52■□□□□ 0.23
LDB3-207ENST00000542786 EVX2Q03828 476 aa16.52■□□□□ 0.23
LDB3-207ENST00000542786 WTAPQ15007 396 aa16.52■□□□□ 0.23
LDB3-207ENST00000542786 GRIK5Q16478 980 aa16.52■□□□□ 0.23
LDB3-207ENST00000542786 UVSSAQ2YD98 709 aa16.52■□□□□ 0.23
LDB3-207ENST00000542786 SBK1Q52WX2 424 aa16.52■□□□□ 0.23
LDB3-207ENST00000542786 CCDC144CPQ8IYA2 1237 aa16.52■□□□□ 0.23
LDB3-207ENST00000542786 AKT1S1Q96B36 256 aa16.52■□□□□ 0.23
LDB3-207ENST00000542786 GPR101Q96P66 508 aaPredicted RBP16.52■□□□□ 0.23
LDB3-207ENST00000542786 CRAMP1Q96RY5 1269 aa16.52■□□□□ 0.23
LDB3-207ENST00000542786 ZKSCAN3Q9BRR0 538 aa16.52■□□□□ 0.23
LDB3-207ENST00000542786 MKRN1Q9UHC7 482 aaKnown RBP16.52■□□□□ 0.23
LDB3-207ENST00000542786 CCDC69A6NI79 296 aa16.51■□□□□ 0.23
LDB3-207ENST00000542786 FMNL1O95466 1100 aaPredicted RBP16.51■□□□□ 0.23
LDB3-207ENST00000542786 MYSM1Q5VVJ2 828 aa16.51■□□□□ 0.23
LDB3-207ENST00000542786 SPTY2D1Q68D10 685 aaPredicted RBP16.51■□□□□ 0.23
LDB3-207ENST00000542786 NBPF11Q86T75 865 aa16.51■□□□□ 0.23
LDB3-207ENST00000542786 TMTC2Q8N394 836 aa16.51■□□□□ 0.23
LDB3-207ENST00000542786 WDR66Q8TBY9 1149 aa16.51■□□□□ 0.23
LDB3-207ENST00000542786 ESR2Q92731 530 aa16.51■□□□□ 0.23
LDB3-207ENST00000542786 CRNKL1Q9BZJ0 848 aaKnown RBP16.51■□□□□ 0.23
LDB3-207ENST00000542786 GOLPH3LQ9H4A5 285 aa16.51■□□□□ 0.23
LDB3-207ENST00000542786 RTN4Q9NQC3 1192 aaKnown RBP16.51■□□□□ 0.23
LDB3-207ENST00000542786 AATFQ9NY61 560 aaKnown RBP eCLIP16.51■□□□□ 0.23
LDB3-207ENST00000542786 PODXL2Q9NZ53 605 aa16.51■□□□□ 0.23
LDB3-207ENST00000542786 JAG2Q9Y219 1238 aa16.51■□□□□ 0.23
LDB3-207ENST00000542786 USP17L12C9JPN9 530 aa16.5■□□□□ 0.23
LDB3-207ENST00000542786 USP17L21D6R901 530 aa16.5■□□□□ 0.23
LDB3-207ENST00000542786 UBE2Q2LH0YL09 131 aa16.5■□□□□ 0.23
LDB3-207ENST00000542786 ORC4O43929 436 aa16.5■□□□□ 0.23
LDB3-207ENST00000542786 RBM6P78332 1123 aaKnown RBP16.5■□□□□ 0.23
LDB3-207ENST00000542786 CEBPZQ03701 1054 aaKnown RBP16.5■□□□□ 0.23
LDB3-207ENST00000542786 SART3Q15020 963 aaKnown RBP16.5■□□□□ 0.23
LDB3-207ENST00000542786 KRT40Q6A162 431 aa16.5■□□□□ 0.23
LDB3-207ENST00000542786 CPLX2Q6PUV4 134 aaKnown RBP16.5■□□□□ 0.23
LDB3-207ENST00000542786 RBM17Q96I25 401 aaKnown RBP16.5■□□□□ 0.23
LDB3-207ENST00000542786 ATP8A2Q9NTI2 1148 aa16.5■□□□□ 0.23
LDB3-207ENST00000542786 POLR3EQ9NVU0 708 aa16.5■□□□□ 0.23
LDB3-207ENST00000542786 GOLGA6L4A6NEF3 574 aa16.5■□□□□ 0.23
LDB3-207ENST00000542786 PLSCR1O15162 318 aa16.5■□□□□ 0.23
LDB3-207ENST00000542786 BBOX1O75936 387 aa16.5■□□□□ 0.23
LDB3-207ENST00000542786 IARSP41252 1262 aaKnown RBP16.5■□□□□ 0.23
LDB3-207ENST00000542786 MAP3K11Q16584 847 aa16.5■□□□□ 0.23
LDB3-207ENST00000542786 ZNF804AQ7Z570 1209 aa16.5■□□□□ 0.23
LDB3-207ENST00000542786 ZNF654Q8IZM8 581 aa16.5■□□□□ 0.23
LDB3-207ENST00000542786 STK11IPQ8N1F8 1099 aa16.5■□□□□ 0.23
LDB3-207ENST00000542786 ENAHQ8N8S7 591 aaPredicted RBP16.5■□□□□ 0.23
LDB3-207ENST00000542786 LINC00301Q8NCQ3 95 aa16.5■□□□□ 0.23
LDB3-207ENST00000542786 ENGASEQ8NFI3 743 aa16.5■□□□□ 0.23
LDB3-207ENST00000542786 TNKSO95271 1327 aa16.5■□□□□ 0.23
LDB3-207ENST00000542786 MYH2Q9UKX2 1941 aa16.49■□□□□ 0.23
LDB3-207ENST00000542786 YEATS4O95619 227 aa16.49■□□□□ 0.23
LDB3-207ENST00000542786 IL1R1P14778 569 aa16.49■□□□□ 0.23
LDB3-207ENST00000542786 ATP2B4P23634 1241 aa16.49■□□□□ 0.23
LDB3-207ENST00000542786 SNW1Q13573 536 aaKnown RBP16.49■□□□□ 0.23
LDB3-207ENST00000542786 RTN1Q16799 776 aa16.49■□□□□ 0.23
LDB3-207ENST00000542786 BICD2Q8TD16 824 aa16.49■□□□□ 0.23
LDB3-207ENST00000542786 ANP32BQ92688 251 aaKnown RBP16.49■□□□□ 0.23
LDB3-207ENST00000542786 TOMM22Q9NS69 142 aa16.49■□□□□ 0.23
LDB3-207ENST00000542786 CLIC4Q9Y696 253 aa16.49■□□□□ 0.23
LDB3-207ENST00000542786 CYP2D6P10635 497 aa16.48■□□□□ 0.23
LDB3-207ENST00000542786 U2AF2P26368 475 aaKnown RBP eCLIP16.48■□□□□ 0.23
LDB3-207ENST00000542786 PPP4CP60510 307 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms