RNA–Protein interactions for RNA: ENST00000541586.5

CCM2-218, Transcript of CCM2 scaffold protein, human

TSL 3 BASIC

Gene CCM2, Length 1,719 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCM2-218	ENST00000541586	MAGEB6P1	A0A0J9YX57	407 aa		33.05	■■■□□ 2.88
CCM2-218	ENST00000541586	CYP21A2	P08686	494 aa		33.05	■■■□□ 2.88
CCM2-218	ENST00000541586	CDC42EP5	Q6NZY7	148 aa		33.05	■■■□□ 2.88
CCM2-218	ENST00000541586	TMED8	Q6PL24	325 aa	Predicted RBP	33.05	■■■□□ 2.88
CCM2-218	ENST00000541586	VEZT	Q9HBM0	779 aa		33.05	■■■□□ 2.88
CCM2-218	ENST00000541586	MBD4	O95243	580 aa		33.04	■■■□□ 2.88
CCM2-218	ENST00000541586	CAST	P20810	708 aa	Known RBP	33.04	■■■□□ 2.88
CCM2-218	ENST00000541586	CACNB3	P54284	484 aa		33.04	■■■□□ 2.88
CCM2-218	ENST00000541586	IL27	Q8NEV9	243 aa		33.04	■■■□□ 2.88
CCM2-218	ENST00000541586	ANGEL2	Q5VTE6	544 aa	Known RBP	33.03	■■■□□ 2.88
CCM2-218	ENST00000541586	ZNF70	Q9UC06	446 aa	Predicted RBP	33.03	■■■□□ 2.88
CCM2-218	ENST00000541586	RPAP1	Q9BWH6	1393 aa	Predicted RBP	33.03	■■■□□ 2.88
CCM2-218	ENST00000541586	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	33.02	■■■□□ 2.88
CCM2-218	ENST00000541586	ARMT1	Q9H993	441 aa		33.02	■■■□□ 2.88
CCM2-218	ENST00000541586	ZSWIM6	Q9HCJ5	1215 aa		33.02	■■■□□ 2.88
CCM2-218	ENST00000541586	GGA3	Q9NZ52	723 aa		33.02	■■■□□ 2.88
CCM2-218	ENST00000541586	MAST2	Q6P0Q8	1798 aa		33.01	■■■□□ 2.88
CCM2-218	ENST00000541586	FGA	P02671	866 aa		33.01	■■■□□ 2.87
CCM2-218	ENST00000541586	PPP4C	P60510	307 aa		33.01	■■■□□ 2.87
CCM2-218	ENST00000541586	CTNNA3	Q9UI47	895 aa		33.01	■■■□□ 2.87
CCM2-218	ENST00000541586	PSMA5	P28066	241 aa		33	■■■□□ 2.87
CCM2-218	ENST00000541586	KRT32	Q14532	448 aa		33	■■■□□ 2.87
CCM2-218	ENST00000541586	LCORL	Q8N3X6	602 aa		33	■■■□□ 2.87
CCM2-218	ENST00000541586	SPRYD3	Q8NCJ5	442 aa		33	■■■□□ 2.87
CCM2-218	ENST00000541586	RIOK1	Q9BRS2	568 aa	Known RBP	33	■■■□□ 2.87
CCM2-218	ENST00000541586	TMOD2	Q9NZR1	351 aa		33	■■■□□ 2.87
CCM2-218	ENST00000541586	TCP10L2	B9ZVM9	353 aa		32.99	■■■□□ 2.87
CCM2-218	ENST00000541586	CPA1	P15085	419 aa		32.99	■■■□□ 2.87
CCM2-218	ENST00000541586	RHBDL3	P58872	404 aa		32.99	■■■□□ 2.87
CCM2-218	ENST00000541586	SPDYE2	Q495Y8	402 aa		32.99	■■■□□ 2.87
CCM2-218	ENST00000541586	TEX11	Q8IYF3	940 aa		32.99	■■■□□ 2.87
CCM2-218	ENST00000541586	TTC14	Q96N46	770 aa		32.99	■■■□□ 2.87
CCM2-218	ENST00000541586	PLCG2	P16885	1265 aa		32.99	■■■□□ 2.87
CCM2-218	ENST00000541586	DCPS	Q96C86	337 aa	Known RBP	32.99	■■■□□ 2.87
CCM2-218	ENST00000541586	CYP46A1	Q9Y6A2	500 aa		32.99	■■■□□ 2.87
CCM2-218	ENST00000541586	MCM2	P49736	904 aa		32.98	■■■□□ 2.87
CCM2-218	ENST00000541586	RUFY3	Q7L099	469 aa		32.98	■■■□□ 2.87
CCM2-218	ENST00000541586	PICALM	Q13492	652 aa		32.97	■■■□□ 2.87
CCM2-218	ENST00000541586	TGFBRAP1	Q8WUH2	860 aa		32.97	■■■□□ 2.87
CCM2-218	ENST00000541586	KIF3C	O14782	793 aa		32.97	■■■□□ 2.87
CCM2-218	ENST00000541586	APP	P05067	770 aa		32.97	■■■□□ 2.87
CCM2-218	ENST00000541586	ZC3H15	Q8WU90	426 aa	Known RBP	32.97	■■■□□ 2.87
CCM2-218	ENST00000541586	PATL2	C9JE40	543 aa	Known RBP	32.96	■■■□□ 2.87
CCM2-218	ENST00000541586	GNAT2	P19087	354 aa		32.96	■■■□□ 2.87
CCM2-218	ENST00000541586	TCP10	Q12799	353 aa		32.96	■■■□□ 2.87
CCM2-218	ENST00000541586	NFIA	Q12857	509 aa		32.96	■■■□□ 2.87
CCM2-218	ENST00000541586	COL9A3	Q14050	684 aa	Predicted RBP	32.95	■■■□□ 2.87
CCM2-218	ENST00000541586	MAP1S	Q66K74	1059 aa	Predicted RBP	32.95	■■■□□ 2.87
CCM2-218	ENST00000541586	LDHD	Q86WU2	507 aa		32.95	■■■□□ 2.87
CCM2-218	ENST00000541586	PRKAB2	O43741	272 aa		32.94	■■■□□ 2.86
CCM2-218	ENST00000541586	USP5	P45974	858 aa		32.94	■■■□□ 2.86
CCM2-218	ENST00000541586	IMMT	Q16891	758 aa	Known RBP	32.94	■■■□□ 2.86
CCM2-218	ENST00000541586	BLOC1S2	Q6QNY1	142 aa		32.94	■■■□□ 2.86
CCM2-218	ENST00000541586	STOX1	Q6ZVD7	989 aa		32.94	■■■□□ 2.86
CCM2-218	ENST00000541586	CERS3	Q8IU89	383 aa		32.94	■■■□□ 2.86
CCM2-218	ENST00000541586	CRNKL1	Q9BZJ0	848 aa	Known RBP	32.94	■■■□□ 2.86
CCM2-218	ENST00000541586	SLK	Q9H2G2	1235 aa	Predicted RBP	32.94	■■■□□ 2.86
CCM2-218	ENST00000541586	PDRG1	Q9NUG6	133 aa		32.94	■■■□□ 2.86
CCM2-218	ENST00000541586	WDHD1	O75717	1129 aa	Predicted RBP	32.94	■■■□□ 2.86
CCM2-218	ENST00000541586	ALX1	Q15699	326 aa		32.94	■■■□□ 2.86
CCM2-218	ENST00000541586	SDR42E1	Q8WUS8	393 aa		32.94	■■■□□ 2.86
CCM2-218	ENST00000541586	NEK1	Q96PY6	1258 aa		32.94	■■■□□ 2.86
CCM2-218	ENST00000541586	SLC4A4	Q9Y6R1	1079 aa		32.94	■■■□□ 2.86
CCM2-218	ENST00000541586	MAPKAPK5	Q8IW41	473 aa		32.93	■■■□□ 2.86
CCM2-218	ENST00000541586	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	32.93	■■■□□ 2.86
CCM2-218	ENST00000541586	PGAP2	Q9UHJ9	254 aa		32.93	■■■□□ 2.86
CCM2-218	ENST00000541586	GSG1L2	A8MUP6	293 aa		32.92	■■■□□ 2.86
CCM2-218	ENST00000541586	AK2	P54819	239 aa		32.92	■■■□□ 2.86
CCM2-218	ENST00000541586	KRT26	Q7Z3Y9	468 aa		32.92	■■■□□ 2.86
CCM2-218	ENST00000541586	APOBEC3F	Q8IUX4	373 aa	Known RBP	32.92	■■■□□ 2.86
CCM2-218	ENST00000541586	SULF1	Q8IWU6	871 aa		32.92	■■■□□ 2.86
CCM2-218	ENST00000541586	IFNL3	Q8IZI9	196 aa		32.92	■■■□□ 2.86
CCM2-218	ENST00000541586	DDX4	Q9NQI0	724 aa	Known RBP	32.92	■■■□□ 2.86
CCM2-218	ENST00000541586	ZMYM6	O95789	1325 aa		32.92	■■■□□ 2.86
CCM2-218	ENST00000541586	RPS6KB1	P23443	525 aa		32.91	■■■□□ 2.86
CCM2-218	ENST00000541586	HAND2	P61296	217 aa		32.91	■■■□□ 2.86
CCM2-218	ENST00000541586	NOL8	Q76FK4	1167 aa	Known RBP	32.91	■■■□□ 2.86
CCM2-218	ENST00000541586	USP48	Q86UV5	1035 aa		32.91	■■■□□ 2.86
CCM2-218	ENST00000541586		E7EWF7	191 aa		32.91	■■■□□ 2.86
CCM2-218	ENST00000541586	DLK2	Q6UY11	383 aa		32.91	■■■□□ 2.86
CCM2-218	ENST00000541586	TMX3	Q96JJ7	454 aa		32.91	■■■□□ 2.86
CCM2-218	ENST00000541586	DEFB129	Q9H1M3	183 aa		32.91	■■■□□ 2.86
CCM2-218	ENST00000541586	FAM198A	Q9UFP1	575 aa		32.91	■■■□□ 2.86
CCM2-218	ENST00000541586	POLR2A	P24928	1970 aa	Known RBP	32.91	■■■□□ 2.86
CCM2-218	ENST00000541586	ZNF213	O14771	459 aa		32.9	■■■□□ 2.86
CCM2-218	ENST00000541586	HSP90AA1	P07900	732 aa	Known RBP	32.9	■■■□□ 2.86
CCM2-218	ENST00000541586	TNFAIP1	Q13829	316 aa		32.9	■■■□□ 2.86
CCM2-218	ENST00000541586	RASA3	Q14644	834 aa		32.9	■■■□□ 2.86
CCM2-218	ENST00000541586	PRAMEF18	Q5VWM3	479 aa		32.9	■■■□□ 2.86
CCM2-218	ENST00000541586	ZFPM1	Q8IX07	1006 aa		32.9	■■■□□ 2.86
CCM2-218	ENST00000541586	IDI2	Q9BXS1	227 aa		32.9	■■■□□ 2.86
CCM2-218	ENST00000541586	ADM5	C9JUS6	153 aa		32.89	■■■□□ 2.86
CCM2-218	ENST00000541586	TNNI2	P48788	182 aa		32.89	■■■□□ 2.86
CCM2-218	ENST00000541586	GLIS2	Q9BZE0	524 aa	Predicted RBP	32.89	■■■□□ 2.86
CCM2-218	ENST00000541586	PITPNM2	Q9BZ72	1349 aa		32.89	■■■□□ 2.86
CCM2-218	ENST00000541586	NACAP1	Q9BZK3	213 aa		32.88	■■■□□ 2.85
CCM2-218	ENST00000541586	TMEM39B	Q9GZU3	492 aa		32.88	■■■□□ 2.85
CCM2-218	ENST00000541586	NAPB	Q9H115	298 aa		32.88	■■■□□ 2.85
CCM2-218	ENST00000541586	CHADL	Q6NUI6	762 aa		32.88	■■■□□ 2.85
CCM2-218	ENST00000541586	CDC37L1	Q7L3B6	337 aa		32.88	■■■□□ 2.85

Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms