RNA–Protein interactions for RNA: ENST00000540683.1

CDCA3-208, Transcript of cell division cycle associated 3, humanhuman

TSL 2 BASIC

Gene CDCA3, Length 985 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-208ENST00000540683 ZNF112Q9UJU3 913 aa12.71□□□□□ -0.37
CDCA3-208ENST00000540683 OTOFQ9HC10 1997 aa12.7□□□□□ -0.38
CDCA3-208ENST00000540683 AOX1Q06278 1338 aa12.7□□□□□ -0.38
CDCA3-208ENST00000540683 BTDP43251 543 aa12.7□□□□□ -0.38
CDCA3-208ENST00000540683 RGS19P49795 217 aa12.7□□□□□ -0.38
CDCA3-208ENST00000540683 RGS3P49796 1198 aa12.7□□□□□ -0.38
CDCA3-208ENST00000540683 SP3Q02447 781 aa12.7□□□□□ -0.38
CDCA3-208ENST00000540683 MLLT1Q03111 559 aaPredicted RBP12.7□□□□□ -0.38
CDCA3-208ENST00000540683 MECOMQ03112 1051 aa12.7□□□□□ -0.38
CDCA3-208ENST00000540683 TAF1CQ15572 869 aaPredicted RBP12.7□□□□□ -0.38
CDCA3-208ENST00000540683 NAA16Q6N069 864 aaPredicted RBP12.7□□□□□ -0.38
CDCA3-208ENST00000540683 MS4A4AQ96JQ5 239 aa12.7□□□□□ -0.38
CDCA3-208ENST00000540683 DHX36Q9H2U1 1008 aaKnown RBP12.7□□□□□ -0.38
CDCA3-208ENST00000540683 RCAN3Q9UKA8 241 aa12.7□□□□□ -0.38
CDCA3-208ENST00000540683 COL2A1P02458 1487 aaPredicted RBP12.7□□□□□ -0.38
CDCA3-208ENST00000540683 CXCL11O14625 94 aa12.69□□□□□ -0.38
CDCA3-208ENST00000540683 TBC1D12O60347 775 aa12.69□□□□□ -0.38
CDCA3-208ENST00000540683 CTNND1O60716 968 aaKnown RBP12.69□□□□□ -0.38
CDCA3-208ENST00000540683 CRHR2Q13324 411 aa12.69□□□□□ -0.38
CDCA3-208ENST00000540683 PDE3AQ14432 1141 aa12.69□□□□□ -0.38
CDCA3-208ENST00000540683 TTF1Q15361 905 aaPredicted RBP12.69□□□□□ -0.38
CDCA3-208ENST00000540683 FASTKD5Q7L8L6 764 aaKnown RBP12.69□□□□□ -0.38
CDCA3-208ENST00000540683 CLASRPQ8N2M8 674 aaKnown RBP12.69□□□□□ -0.38
CDCA3-208ENST00000540683 NSUN4Q96CB9 384 aaKnown RBP12.69□□□□□ -0.38
CDCA3-208ENST00000540683 FZD1Q9UP38 647 aa12.69□□□□□ -0.38
CDCA3-208ENST00000540683 SNCAIPQ9Y6H5 919 aa12.69□□□□□ -0.38
CDCA3-208ENST00000540683 DOCK2Q92608 1830 aa12.68□□□□□ -0.38
CDCA3-208ENST00000540683 IGF2BP3O00425 579 aaKnown RBP eCLIP12.68□□□□□ -0.38
CDCA3-208ENST00000540683 RAB11FIP3O75154 756 aa12.68□□□□□ -0.38
CDCA3-208ENST00000540683 VASPP50552 380 aaPredicted RBP12.68□□□□□ -0.38
CDCA3-208ENST00000540683 PRMT2P55345 433 aa12.68□□□□□ -0.38
CDCA3-208ENST00000540683 MAP3K12Q12852 859 aa12.68□□□□□ -0.38
CDCA3-208ENST00000540683 CEP85Q6P2H3 762 aa12.68□□□□□ -0.38
CDCA3-208ENST00000540683 MIGA2Q7L4E1 593 aa12.68□□□□□ -0.38
CDCA3-208ENST00000540683 NBPF11Q86T75 865 aa12.68□□□□□ -0.38
CDCA3-208ENST00000540683 ZKSCAN4Q969J2 545 aaPredicted RBP12.68□□□□□ -0.38
CDCA3-208ENST00000540683 KIF1BPQ96EK5 621 aa12.68□□□□□ -0.38
CDCA3-208ENST00000540683 TRIM34Q9BYJ4 488 aa12.68□□□□□ -0.38
CDCA3-208ENST00000540683 EFCC1Q9HA90 598 aa12.68□□□□□ -0.38
CDCA3-208ENST00000540683 FAM198AQ9UFP1 575 aa12.68□□□□□ -0.38
CDCA3-208ENST00000540683 HERC5Q9UII4 1024 aaKnown RBP12.68□□□□□ -0.38
CDCA3-208ENST00000540683 ATRNL1Q5VV63 1379 aa12.68□□□□□ -0.38
CDCA3-208ENST00000540683 IRF6O14896 467 aa12.67□□□□□ -0.38
CDCA3-208ENST00000540683 HOXD10P28358 340 aa12.67□□□□□ -0.38
CDCA3-208ENST00000540683 MCAMP43121 646 aa12.67□□□□□ -0.38
CDCA3-208ENST00000540683 MAP3K10Q02779 954 aa12.67□□□□□ -0.38
CDCA3-208ENST00000540683 NFIAQ12857 509 aa12.67□□□□□ -0.38
CDCA3-208ENST00000540683 MKRN4PQ13434 485 aaPredicted RBP12.67□□□□□ -0.38
CDCA3-208ENST00000540683 ANKRD23Q86SG2 305 aa12.67□□□□□ -0.38
CDCA3-208ENST00000540683 TEX11Q8IYF3 940 aa12.67□□□□□ -0.38
CDCA3-208ENST00000540683 SCYL3Q8IZE3 742 aa12.67□□□□□ -0.38
CDCA3-208ENST00000540683 BRI3BPQ8WY22 251 aa12.67□□□□□ -0.38
CDCA3-208ENST00000540683 OSBPL5Q9H0X9 879 aaPredicted RBP12.67□□□□□ -0.38
CDCA3-208ENST00000540683 GINM1Q9NU53 330 aa12.67□□□□□ -0.38
CDCA3-208ENST00000540683 KCNH4Q9UQ05 1017 aa12.67□□□□□ -0.38
CDCA3-208ENST00000540683 TNNQ9UQP3 1299 aa12.67□□□□□ -0.38
CDCA3-208ENST00000540683 TRIM17Q9Y577 477 aa12.67□□□□□ -0.38
CDCA3-208ENST00000540683 MAST2Q6P0Q8 1798 aa12.66□□□□□ -0.38
CDCA3-208ENST00000540683 TLR2O60603 784 aa12.66□□□□□ -0.38
CDCA3-208ENST00000540683 HLA-DOAP06340 250 aa12.66□□□□□ -0.38
CDCA3-208ENST00000540683 RLBP1P12271 317 aa12.66□□□□□ -0.38
CDCA3-208ENST00000540683 GJA5P36382 358 aa12.66□□□□□ -0.38
CDCA3-208ENST00000540683 PICALMQ13492 652 aa12.66□□□□□ -0.38
CDCA3-208ENST00000540683 PANK1Q8TE04 598 aa12.66□□□□□ -0.38
CDCA3-208ENST00000540683 PARK7Q99497 189 aaKnown RBP12.66□□□□□ -0.38
CDCA3-208ENST00000540683 DBNDD2Q9BQY9 259 aa12.66□□□□□ -0.38
CDCA3-208ENST00000540683 C1orf115Q9H7X2 142 aa12.66□□□□□ -0.38
CDCA3-208ENST00000540683 PI4KBQ9UBF8 816 aa12.66□□□□□ -0.38
CDCA3-208ENST00000540683 HPS5Q9UPZ3 1129 aa12.66□□□□□ -0.38
CDCA3-208ENST00000540683 SLC45A1Q9Y2W3 748 aa12.66□□□□□ -0.38
CDCA3-208ENST00000540683 IFIT2P09913 472 aaKnown RBP12.65□□□□□ -0.38
CDCA3-208ENST00000540683 PPP4CP60510 307 aa12.65□□□□□ -0.38
CDCA3-208ENST00000540683 PABPC4Q13310 644 aaKnown RBP eCLIP12.65□□□□□ -0.382e-7■■■□□ 15.6
CDCA3-208ENST00000540683 AACSQ86V21 672 aa12.65□□□□□ -0.38
CDCA3-208ENST00000540683 CDAN1Q8IWY9 1227 aa12.65□□□□□ -0.38
CDCA3-208ENST00000540683 PTPN18Q99952 460 aa12.65□□□□□ -0.38
CDCA3-208ENST00000540683 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.65□□□□□ -0.38
CDCA3-208ENST00000540683 AS3MTQ9HBK9 375 aa12.65□□□□□ -0.38
CDCA3-208ENST00000540683 PNMA3Q9UL41 463 aa12.65□□□□□ -0.38
CDCA3-208ENST00000540683 TAOK2Q9UL54 1235 aa12.65□□□□□ -0.38
CDCA3-208ENST00000540683 RFX7Q2KHR2 1363 aa12.65□□□□□ -0.38
CDCA3-208ENST00000540683 INPP5BP32019 993 aa12.64□□□□□ -0.39
CDCA3-208ENST00000540683 RHBDL3P58872 404 aa12.64□□□□□ -0.39
CDCA3-208ENST00000540683 TBC1D9Q6ZT07 1266 aa12.64□□□□□ -0.39
CDCA3-208ENST00000540683 OTOP1Q7RTM1 612 aa12.64□□□□□ -0.39
CDCA3-208ENST00000540683 FOXP4Q8IVH2 680 aaPredicted RBP12.64□□□□□ -0.39
CDCA3-208ENST00000540683 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.64□□□□□ -0.39
CDCA3-208ENST00000540683 ZBTB40Q9NUA8 1239 aa12.64□□□□□ -0.39
CDCA3-208ENST00000540683 ZHX2Q9Y6X8 837 aa12.64□□□□□ -0.39
CDCA3-208ENST00000540683 PHF20L1A8MW92 1017 aa12.63□□□□□ -0.39
CDCA3-208ENST00000540683 BTBD19C9JJ37 291 aa12.63□□□□□ -0.39
CDCA3-208ENST00000540683 PDHXO00330 501 aa12.63□□□□□ -0.39
CDCA3-208ENST00000540683 IDH1O75874 414 aaKnown RBP12.63□□□□□ -0.39
CDCA3-208ENST00000540683 PTPRAP18433 802 aa12.63□□□□□ -0.39
CDCA3-208ENST00000540683 FAM43AQ8N2R8 423 aa12.63□□□□□ -0.39
CDCA3-208ENST00000540683 CRACR2BQ8N4Y2 399 aaPredicted RBP12.63□□□□□ -0.39
CDCA3-208ENST00000540683 RHPN1Q8TCX5 695 aa12.63□□□□□ -0.39
CDCA3-208ENST00000540683 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.63□□□□□ -0.39
CDCA3-208ENST00000540683 DBNLQ9UJU6 430 aaKnown RBP12.63□□□□□ -0.39
CDCA3-208ENST00000540683 EXOC6BQ9Y2D4 811 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms