RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 ATP8A2Q9NTI2 1148 aa12.65□□□□□ -0.38
VPS33A-204ENST00000540669 FAM198AQ9UFP1 575 aa12.65□□□□□ -0.38
VPS33A-204ENST00000540669 GJA3Q9Y6H8 435 aa12.65□□□□□ -0.38
VPS33A-204ENST00000540669 POLR2AP24928 1970 aaKnown RBP12.65□□□□□ -0.38
VPS33A-204ENST00000540669 OTOFQ9HC10 1997 aa12.65□□□□□ -0.38
VPS33A-204ENST00000540669 MYH8P13535 1937 aa12.64□□□□□ -0.39
VPS33A-204ENST00000540669 EIF5BO60841 1220 aaKnown RBP12.64□□□□□ -0.39
VPS33A-204ENST00000540669 REC8O95072 547 aa12.64□□□□□ -0.39
VPS33A-204ENST00000540669 NFIAQ12857 509 aa12.64□□□□□ -0.39
VPS33A-204ENST00000540669 NECTIN1Q15223 517 aa12.64□□□□□ -0.39
VPS33A-204ENST00000540669 KIF4BQ2VIQ3 1234 aa12.64□□□□□ -0.39
VPS33A-204ENST00000540669 NBPF9Q3BBW0 867 aa12.64□□□□□ -0.39
VPS33A-204ENST00000540669 SBK1Q52WX2 424 aa12.64□□□□□ -0.39
VPS33A-204ENST00000540669 METTL16Q86W50 562 aaKnown RBP12.64□□□□□ -0.39
VPS33A-204ENST00000540669 CRNKL1Q9BZJ0 848 aaKnown RBP12.64□□□□□ -0.39
VPS33A-204ENST00000540669 ANAPC4Q9UJX5 808 aa12.64□□□□□ -0.39
VPS33A-204ENST00000540669 PATL2C9JE40 543 aaKnown RBP12.63□□□□□ -0.39
VPS33A-204ENST00000540669 ENTPD3O75355 529 aa12.63□□□□□ -0.39
VPS33A-204ENST00000540669 FGRP09769 529 aa12.63□□□□□ -0.39
VPS33A-204ENST00000540669 HSPA4P34932 840 aa12.63□□□□□ -0.39
VPS33A-204ENST00000540669 RBM25P49756 843 aaKnown RBP12.63□□□□□ -0.39
VPS33A-204ENST00000540669 DLGAP5Q15398 846 aa12.63□□□□□ -0.39
VPS33A-204ENST00000540669 SAMD7Q7Z3H4 446 aa12.63□□□□□ -0.39
VPS33A-204ENST00000540669 FAM83AQ86UY5 434 aa12.63□□□□□ -0.39
VPS33A-204ENST00000540669 SDR42E1Q8WUS8 393 aa12.63□□□□□ -0.39
VPS33A-204ENST00000540669 TAF1DQ9H5J8 278 aaPredicted RBP12.63□□□□□ -0.39
VPS33A-204ENST00000540669 RRAGCQ9HB90 399 aa12.63□□□□□ -0.39
VPS33A-204ENST00000540669 ZNF70Q9UC06 446 aaPredicted RBP12.63□□□□□ -0.39
VPS33A-204ENST00000540669 TAOK2Q9UL54 1235 aa12.63□□□□□ -0.39
VPS33A-204ENST00000540669 ASTN2O75129 1339 aaPredicted RBP12.62□□□□□ -0.39
VPS33A-204ENST00000540669 TOMM70O94826 608 aa12.62□□□□□ -0.39
VPS33A-204ENST00000540669 FGAP02671 866 aa12.62□□□□□ -0.39
VPS33A-204ENST00000540669 TSGA10IPQ3SY00 556 aa12.62□□□□□ -0.39
VPS33A-204ENST00000540669 USP50Q70EL3 339 aaPredicted RBP12.62□□□□□ -0.39
VPS33A-204ENST00000540669 SH3BP5LQ7L8J4 393 aa12.62□□□□□ -0.39
VPS33A-204ENST00000540669 TEX11Q8IYF3 940 aa12.62□□□□□ -0.39
VPS33A-204ENST00000540669 IFNL3Q8IZI9 196 aa12.62□□□□□ -0.39
VPS33A-204ENST00000540669 TBC1D32Q96NH3 1257 aa12.62□□□□□ -0.39
VPS33A-204ENST00000540669 OSBPL5Q9H0X9 879 aaPredicted RBP12.62□□□□□ -0.39
VPS33A-204ENST00000540669 TDRD3Q9H7E2 651 aaKnown RBP12.62□□□□□ -0.39
VPS33A-204ENST00000540669 ANO2Q9NQ90 1003 aa12.62□□□□□ -0.39
VPS33A-204ENST00000540669 HACL1Q9UJ83 578 aa12.62□□□□□ -0.39
VPS33A-204ENST00000540669 RBM8AQ9Y5S9 174 aaKnown RBP12.62□□□□□ -0.39
VPS33A-204ENST00000540669 TAF6LQ9Y6J9 622 aa12.62□□□□□ -0.39
VPS33A-204ENST00000540669 SLC4A4Q9Y6R1 1079 aa12.62□□□□□ -0.39
VPS33A-204ENST00000540669 ATAD5Q96QE3 1844 aa12.61□□□□□ -0.39
VPS33A-204ENST00000540669 H7C1D1 291 aa12.61□□□□□ -0.39
VPS33A-204ENST00000540669 CYP21A2P08686 494 aa12.61□□□□□ -0.39
VPS33A-204ENST00000540669 MAP3K10Q02779 954 aa12.61□□□□□ -0.39
VPS33A-204ENST00000540669 GABPAQ06546 454 aa12.61□□□□□ -0.39
VPS33A-204ENST00000540669 TBC1D10BQ4KMP7 808 aaPredicted RBP12.61□□□□□ -0.39
VPS33A-204ENST00000540669 PNMA8AQ86V59 439 aaPredicted RBP12.61□□□□□ -0.39
VPS33A-204ENST00000540669 SMC1BQ8NDV3 1235 aa12.61□□□□□ -0.39
VPS33A-204ENST00000540669 ZC3H15Q8WU90 426 aaKnown RBP12.61□□□□□ -0.39
VPS33A-204ENST00000540669 TEPSINQ96N21 525 aa12.61□□□□□ -0.39
VPS33A-204ENST00000540669 KIF2CQ99661 725 aa12.61□□□□□ -0.39
VPS33A-204ENST00000540669 EHD4Q9H223 541 aa12.61□□□□□ -0.39
VPS33A-204ENST00000540669 NMRK2Q9NPI5 230 aa12.61□□□□□ -0.39
VPS33A-204ENST00000540669 USP40Q9NVE5 1235 aa12.61□□□□□ -0.39
VPS33A-204ENST00000540669 ARPP21Q9UBL0 812 aaPredicted RBP12.61□□□□□ -0.39
VPS33A-204ENST00000540669 PALD1Q9ULE6 856 aa12.61□□□□□ -0.39
VPS33A-204ENST00000540669 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.61□□□□□ -0.39
VPS33A-204ENST00000540669 TACC3Q9Y6A5 838 aa12.61□□□□□ -0.39
VPS33A-204ENST00000540669 EPHX2P34913 555 aa12.6□□□□□ -0.39
VPS33A-204ENST00000540669 ANAPC15P60006 121 aa12.6□□□□□ -0.39
VPS33A-204ENST00000540669 C1QTNF8P60827 252 aa12.6□□□□□ -0.39
VPS33A-204ENST00000540669 EVX2Q03828 476 aa12.6□□□□□ -0.39
VPS33A-204ENST00000540669 C12orf60Q5U649 245 aa12.6□□□□□ -0.39
VPS33A-204ENST00000540669 CTR9Q6PD62 1173 aa12.6□□□□□ -0.39
VPS33A-204ENST00000540669 RBM46Q8TBY0 533 aaKnown RBP12.6□□□□□ -0.39
VPS33A-204ENST00000540669 NOL10Q9BSC4 688 aaKnown RBP12.6□□□□□ -0.39
VPS33A-204ENST00000540669 DOCK1Q14185 1865 aa12.59□□□□□ -0.39
VPS33A-204ENST00000540669 TRPM7Q96QT4 1865 aa12.59□□□□□ -0.39
VPS33A-204ENST00000540669 PLIN4Q96Q06 1357 aa12.59□□□□□ -0.39
VPS33A-204ENST00000540669 SMIM22K7EJ46 135 aa12.59□□□□□ -0.39
VPS33A-204ENST00000540669 SLC27A2O14975 620 aa12.59□□□□□ -0.39
VPS33A-204ENST00000540669 CACNB3P54284 484 aa12.59□□□□□ -0.39
VPS33A-204ENST00000540669 FSTL1Q12841 308 aa12.59□□□□□ -0.39
VPS33A-204ENST00000540669 CREB3L3Q68CJ9 461 aa12.59□□□□□ -0.39
VPS33A-204ENST00000540669 STOX1Q6ZVD7 989 aa12.59□□□□□ -0.39
VPS33A-204ENST00000540669 APOBEC3FQ8IUX4 373 aaKnown RBP12.59□□□□□ -0.39
VPS33A-204ENST00000540669 TBC1D10CQ8IV04 446 aa12.59□□□□□ -0.39
VPS33A-204ENST00000540669 ZFPM1Q8IX07 1006 aa12.59□□□□□ -0.39
VPS33A-204ENST00000540669 RASEFQ8IZ41 740 aa12.59□□□□□ -0.39
VPS33A-204ENST00000540669 TGFBRAP1Q8WUH2 860 aa12.59□□□□□ -0.39
VPS33A-204ENST00000540669 FAM151AQ8WW52 585 aa12.59□□□□□ -0.39
VPS33A-204ENST00000540669 DNAJC18Q9H819 358 aa12.59□□□□□ -0.39
VPS33A-204ENST00000540669 GGA3Q9NZ52 723 aa12.59□□□□□ -0.39
VPS33A-204ENST00000540669 CLEC11AQ9Y240 323 aa12.59□□□□□ -0.39
VPS33A-204ENST00000540669 PPP2R3BQ9Y5P8 575 aa12.59□□□□□ -0.39
VPS33A-204ENST00000540669 PHIPQ8WWQ0 1821 aa12.58□□□□□ -0.4
VPS33A-204ENST00000540669 CLRN2A0PK11 232 aa12.58□□□□□ -0.4
VPS33A-204ENST00000540669 DDTLA6NHG4 134 aaPredicted RBP12.58□□□□□ -0.4
VPS33A-204ENST00000540669 COL9A3Q14050 684 aaPredicted RBP12.58□□□□□ -0.4
VPS33A-204ENST00000540669 EAPPQ56P03 285 aaPredicted RBP12.58□□□□□ -0.4
VPS33A-204ENST00000540669 MAPKAPK5Q8IW41 473 aa12.58□□□□□ -0.4
VPS33A-204ENST00000540669 CDAN1Q8IWY9 1227 aa12.58□□□□□ -0.4
VPS33A-204ENST00000540669 STAG1Q8WVM7 1258 aa12.58□□□□□ -0.4
VPS33A-204ENST00000540669 NAPBQ9H115 298 aa12.58□□□□□ -0.4
VPS33A-204ENST00000540669 USP17L12C9JPN9 530 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms