RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 SMNDC1O75940 238 aaKnown RBP eCLIP14.04□□□□□ -0.164e-9■■■□□ 17.4
USP3-203ENST00000538686 ROR2Q01974 943 aaKnown RBP14.04□□□□□ -0.16
USP3-203ENST00000538686 AKAP17AQ02040 695 aaKnown RBP14.04□□□□□ -0.16
USP3-203ENST00000538686 NAA35Q5VZE5 725 aa14.04□□□□□ -0.16
USP3-203ENST00000538686 CWF19L1Q69YN2 538 aaKnown RBP14.04□□□□□ -0.16
USP3-203ENST00000538686 UBE3BQ7Z3V4 1068 aa14.04□□□□□ -0.16
USP3-203ENST00000538686 FBXW7Q969H0 707 aa14.04□□□□□ -0.16
USP3-203ENST00000538686 MKL1Q969V6 931 aa14.04□□□□□ -0.16
USP3-203ENST00000538686 HSD3B7Q9H2F3 369 aa14.04□□□□□ -0.16
USP3-203ENST00000538686 RGL1Q9NZL6 768 aa14.04□□□□□ -0.16
USP3-203ENST00000538686 SPG7Q9UQ90 795 aa14.04□□□□□ -0.16
USP3-203ENST00000538686 ADGRG1Q9Y653 693 aa14.04□□□□□ -0.16
USP3-203ENST00000538686 ADGRF5Q8IZF2 1346 aa14.04□□□□□ -0.16
USP3-203ENST00000538686 SKAP2O75563 359 aaPredicted RBP14.03□□□□□ -0.16
USP3-203ENST00000538686 PDHBP11177 359 aa14.03□□□□□ -0.16
USP3-203ENST00000538686 ATP1A3P13637 1013 aa14.03□□□□□ -0.16
USP3-203ENST00000538686 RPS6KB1P23443 525 aa14.03□□□□□ -0.16
USP3-203ENST00000538686 CCT2P78371 535 aaKnown RBP14.03□□□□□ -0.16
USP3-203ENST00000538686 CKAP4Q07065 602 aaKnown RBP14.03□□□□□ -0.16
USP3-203ENST00000538686 EMC10Q5UCC4 262 aa14.03□□□□□ -0.16
USP3-203ENST00000538686 ALS2CLQ60I27 953 aa14.03□□□□□ -0.16
USP3-203ENST00000538686 CCDC70Q6NSX1 233 aa14.03□□□□□ -0.16
USP3-203ENST00000538686 BZW1Q7L1Q6 419 aaKnown RBP14.03□□□□□ -0.16
USP3-203ENST00000538686 FAM228AQ86W67 206 aa14.03□□□□□ -0.16
USP3-203ENST00000538686 PDILTQ8N807 584 aa14.03□□□□□ -0.16
USP3-203ENST00000538686 RIN2Q8WYP3 895 aaPredicted RBP14.03□□□□□ -0.16
USP3-203ENST00000538686 SELENOOQ9BVL4 669 aa14.03□□□□□ -0.16
USP3-203ENST00000538686 SBNO1A3KN83 1393 aa14.03□□□□□ -0.16
USP3-203ENST00000538686 ATP10BO94823 1461 aa14.03□□□□□ -0.16
USP3-203ENST00000538686 LMTK2Q8IWU2 1503 aa14.03□□□□□ -0.16
USP3-203ENST00000538686 GCLCP48506 637 aaPredicted RBP14.03□□□□□ -0.16
USP3-203ENST00000538686 G3BP1Q13283 466 aaKnown RBP eCLIP14.03□□□□□ -0.16
USP3-203ENST00000538686 XRCC4Q13426 336 aa14.03□□□□□ -0.16
USP3-203ENST00000538686 MTX1Q13505 466 aa14.03□□□□□ -0.16
USP3-203ENST00000538686 LAMB3Q13751 1172 aa14.03□□□□□ -0.16
USP3-203ENST00000538686 NBPF14Q5TI25 921 aa14.03□□□□□ -0.16
USP3-203ENST00000538686 CREB3L3Q68CJ9 461 aa14.03□□□□□ -0.16
USP3-203ENST00000538686 NCAPG2Q86XI2 1143 aa14.03□□□□□ -0.16
USP3-203ENST00000538686 NOA1Q8NC60 698 aaKnown RBP14.03□□□□□ -0.16
USP3-203ENST00000538686 RASSF8Q8NHQ8 419 aa14.03□□□□□ -0.16
USP3-203ENST00000538686 DPF2Q92785 391 aa14.03□□□□□ -0.16
USP3-203ENST00000538686 ALS2CR12Q96Q35 445 aa14.03□□□□□ -0.16
USP3-203ENST00000538686 SLC39A2Q9NP94 309 aa14.03□□□□□ -0.16
USP3-203ENST00000538686 FAM184BQ9ULE4 1060 aa14.03□□□□□ -0.16
USP3-203ENST00000538686 USP42Q9H9J4 1324 aaKnown RBP14.02□□□□□ -0.16
USP3-203ENST00000538686 UGGT1Q9NYU2 1555 aa14.02□□□□□ -0.16
USP3-203ENST00000538686 CEMIPQ8WUJ3 1361 aa14.02□□□□□ -0.16
USP3-203ENST00000538686 ENO4A6NNW6 628 aa14.02□□□□□ -0.16
USP3-203ENST00000538686 HIP1O00291 1037 aa14.02□□□□□ -0.16
USP3-203ENST00000538686 BIN1O00499 593 aa14.02□□□□□ -0.16
USP3-203ENST00000538686 MGRN1O60291 552 aa14.02□□□□□ -0.16
USP3-203ENST00000538686 LUC7L3O95232 432 aaKnown RBP14.02□□□□□ -0.16
USP3-203ENST00000538686 C6orf89Q6UWU4 347 aa14.02□□□□□ -0.16
USP3-203ENST00000538686 OLFM4Q6UX06 510 aa14.02□□□□□ -0.16
USP3-203ENST00000538686 RASGRP2Q7LDG7 609 aa14.02□□□□□ -0.16
USP3-203ENST00000538686 SPATA21Q7Z572 469 aa14.02□□□□□ -0.16
USP3-203ENST00000538686 ZNF473Q8WTR7 871 aaKnown RBP14.02□□□□□ -0.16
USP3-203ENST00000538686 NUP133Q8WUM0 1156 aa14.02□□□□□ -0.16
USP3-203ENST00000538686 ZFAND2BQ8WV99 257 aa14.02□□□□□ -0.16
USP3-203ENST00000538686 EZH1Q92800 747 aaPredicted RBP14.02□□□□□ -0.16
USP3-203ENST00000538686 RUFY1Q96T51 708 aa14.02□□□□□ -0.16
USP3-203ENST00000538686 MMTAG2Q9BU76 263 aaKnown RBP14.02□□□□□ -0.16
USP3-203ENST00000538686 LZTFL1Q9NQ48 299 aa14.02□□□□□ -0.16
USP3-203ENST00000538686 HMG20BQ9P0W2 317 aa14.02□□□□□ -0.16
USP3-203ENST00000538686 ITSN1Q15811 1721 aa14.02□□□□□ -0.17
USP3-203ENST00000538686 BUB1BO60566 1050 aaPredicted RBP14.02□□□□□ -0.17
USP3-203ENST00000538686 RPSAP08865 295 aaKnown RBP14.02□□□□□ -0.17
USP3-203ENST00000538686 ABCD1P33897 745 aa14.02□□□□□ -0.17
USP3-203ENST00000538686 APBA1Q02410 837 aa14.02□□□□□ -0.17
USP3-203ENST00000538686 CEBPZQ03701 1054 aaKnown RBP14.02□□□□□ -0.17
USP3-203ENST00000538686 IQCEQ6IPM2 695 aa14.02□□□□□ -0.17
USP3-203ENST00000538686 KDM7AQ6ZMT4 941 aa14.02□□□□□ -0.17
USP3-203ENST00000538686 KCNG4Q8TDN1 519 aa14.02□□□□□ -0.17
USP3-203ENST00000538686 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.02□□□□□ -0.17
USP3-203ENST00000538686 EHD4Q9H223 541 aa14.02□□□□□ -0.17
USP3-203ENST00000538686 U3KPZ7 1027 aaPredicted RBP14.02□□□□□ -0.17
USP3-203ENST00000538686 DEPDC5O75140 1603 aa14.01□□□□□ -0.17
USP3-203ENST00000538686 AKR1B15C9JRZ8 316 aaPredicted RBP14.01□□□□□ -0.17
USP3-203ENST00000538686 GLRX3O76003 335 aaKnown RBP14.01□□□□□ -0.17
USP3-203ENST00000538686 PAPOLAP51003 745 aaKnown RBP14.01□□□□□ -0.17
USP3-203ENST00000538686 E2F5Q15329 346 aa14.01□□□□□ -0.17
USP3-203ENST00000538686 CCDC181Q5TID7 509 aa14.01□□□□□ -0.17
USP3-203ENST00000538686 SLC35F6Q8N357 371 aa14.01□□□□□ -0.17
USP3-203ENST00000538686 USP28Q96RU2 1077 aa14.01□□□□□ -0.17
USP3-203ENST00000538686 DESI2Q9BSY9 194 aa14.01□□□□□ -0.17
USP3-203ENST00000538686 FANCLQ9NW38 375 aa14.01□□□□□ -0.17
USP3-203ENST00000538686 A0A1W2PP64 1363 aa14□□□□□ -0.17
USP3-203ENST00000538686 PPP1R12BO60237 982 aaPredicted RBP14□□□□□ -0.17
USP3-203ENST00000538686 FAM107AO95990 144 aa14□□□□□ -0.17
USP3-203ENST00000538686 LSP1P33241 339 aa14□□□□□ -0.17
USP3-203ENST00000538686 AMPD2Q01433 879 aa14□□□□□ -0.17
USP3-203ENST00000538686 PTH1RQ03431 593 aa14□□□□□ -0.17
USP3-203ENST00000538686 SNX1Q13596 522 aa14□□□□□ -0.17
USP3-203ENST00000538686 CCNI2Q6ZMN8 369 aaPredicted RBP14□□□□□ -0.17
USP3-203ENST00000538686 DTNBP1Q96EV8 351 aa14□□□□□ -0.17
USP3-203ENST00000538686 ACSBG1Q96GR2 724 aa14□□□□□ -0.17
USP3-203ENST00000538686 RTEL1Q9NZ71 1219 aa14□□□□□ -0.17
USP3-203ENST00000538686 TUBE1Q9UJT0 475 aa14□□□□□ -0.17
USP3-203ENST00000538686 C15orf41Q9Y2V0 281 aa14□□□□□ -0.17
USP3-203ENST00000538686 RBM8AQ9Y5S9 174 aaKnown RBP14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms