RNA–Protein interactions for RNA: ENST00000531474.2

NXF1-209, Transcript of nuclear RNA export factor 1, human

TSL 3

Gene NXF1, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-209	ENST00000531474	RBM46	Q8TBY0	533 aa	Known RBP	11.26	□□□□□ -0.61
NXF1-209	ENST00000531474	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	11.26	□□□□□ -0.61
NXF1-209	ENST00000531474	APPBP2	Q92624	585 aa		11.26	□□□□□ -0.61
NXF1-209	ENST00000531474	GLIS2	Q9BZE0	524 aa	Predicted RBP	11.26	□□□□□ -0.61
NXF1-209	ENST00000531474	PGAP2	Q9UHJ9	254 aa		11.26	□□□□□ -0.61
NXF1-209	ENST00000531474	PITPNM2	Q9BZ72	1349 aa		11.26	□□□□□ -0.61
NXF1-209	ENST00000531474	RFX7	Q2KHR2	1363 aa		11.26	□□□□□ -0.61
NXF1-209	ENST00000531474	MYO5A	Q9Y4I1	1855 aa	Known RBP	11.25	□□□□□ -0.61
NXF1-209	ENST00000531474		M0R2C6	588 aa		11.25	□□□□□ -0.61
NXF1-209	ENST00000531474	MBD4	O95243	580 aa		11.25	□□□□□ -0.61
NXF1-209	ENST00000531474	NEK4	P51957	841 aa		11.25	□□□□□ -0.61
NXF1-209	ENST00000531474	RHBDL3	P58872	404 aa		11.25	□□□□□ -0.61
NXF1-209	ENST00000531474	PPP4C	P60510	307 aa		11.25	□□□□□ -0.61
NXF1-209	ENST00000531474	NUCB2	P80303	420 aa		11.25	□□□□□ -0.61
NXF1-209	ENST00000531474	PICALM	Q13492	652 aa		11.25	□□□□□ -0.61
NXF1-209	ENST00000531474	TNFAIP1	Q13829	316 aa		11.25	□□□□□ -0.61
NXF1-209	ENST00000531474	ZMYM1	Q5SVZ6	1142 aa		11.25	□□□□□ -0.61
NXF1-209	ENST00000531474	CERS3	Q8IU89	383 aa		11.25	□□□□□ -0.61
NXF1-209	ENST00000531474	LCORL	Q8N3X6	602 aa		11.25	□□□□□ -0.61
NXF1-209	ENST00000531474	AIDA	Q96BJ3	306 aa		11.25	□□□□□ -0.61
NXF1-209	ENST00000531474	ARMT1	Q9H993	441 aa		11.25	□□□□□ -0.61
NXF1-209	ENST00000531474	MYH2	Q9UKX2	1941 aa		11.25	□□□□□ -0.61
NXF1-209	ENST00000531474	TRAF5	O00463	557 aa		11.24	□□□□□ -0.61
NXF1-209	ENST00000531474	WDHD1	O75717	1129 aa	Predicted RBP	11.24	□□□□□ -0.61
NXF1-209	ENST00000531474	ZKSCAN1	P17029	563 aa	Predicted RBP	11.24	□□□□□ -0.61
NXF1-209	ENST00000531474	DDIT3	P35638	169 aa		11.24	□□□□□ -0.61
NXF1-209	ENST00000531474	TNNI2	P48788	182 aa		11.24	□□□□□ -0.61
NXF1-209	ENST00000531474	TCP10	Q12799	353 aa		11.24	□□□□□ -0.61
NXF1-209	ENST00000531474	NFIA	Q12857	509 aa		11.24	□□□□□ -0.61
NXF1-209	ENST00000531474	NMI	Q13287	307 aa	Predicted RBP	11.24	□□□□□ -0.61
NXF1-209	ENST00000531474	RASA3	Q14644	834 aa		11.24	□□□□□ -0.61
NXF1-209	ENST00000531474	RNF20	Q5VTR2	975 aa		11.24	□□□□□ -0.61
NXF1-209	ENST00000531474	CWC27	Q6UX04	472 aa	Known RBP	11.24	□□□□□ -0.61
NXF1-209	ENST00000531474	DLK2	Q6UY11	383 aa		11.24	□□□□□ -0.61
NXF1-209	ENST00000531474	CDC37L1	Q7L3B6	337 aa		11.24	□□□□□ -0.61
NXF1-209	ENST00000531474	OSBP2	Q969R2	916 aa		11.24	□□□□□ -0.61
NXF1-209	ENST00000531474	FAM227B	Q96M60	508 aa		11.24	□□□□□ -0.61
NXF1-209	ENST00000531474	RIOK1	Q9BRS2	568 aa	Known RBP	11.24	□□□□□ -0.61
NXF1-209	ENST00000531474	CRNKL1	Q9BZJ0	848 aa	Known RBP	11.24	□□□□□ -0.61
NXF1-209	ENST00000531474	LSG1	Q9H089	658 aa	Known RBP	11.24	□□□□□ -0.61
NXF1-209	ENST00000531474	PUS7L	Q9H0K6	701 aa	Known RBP	11.24	□□□□□ -0.61
NXF1-209	ENST00000531474	DEFB129	Q9H1M3	183 aa		11.24	□□□□□ -0.61
NXF1-209	ENST00000531474		A0A0D9SFI3	127 aa		11.23	□□□□□ -0.61
NXF1-209	ENST00000531474	PSMA5	P28066	241 aa		11.23	□□□□□ -0.61
NXF1-209	ENST00000531474	USP5	P45974	858 aa		11.23	□□□□□ -0.61
NXF1-209	ENST00000531474	FKBP1C	Q5VVH2	108 aa		11.23	□□□□□ -0.61
NXF1-209	ENST00000531474	PRAMEF18	Q5VWM3	479 aa		11.23	□□□□□ -0.61
NXF1-209	ENST00000531474	MAPKAPK5	Q8IW41	473 aa		11.23	□□□□□ -0.61
NXF1-209	ENST00000531474	TGFBRAP1	Q8WUH2	860 aa		11.23	□□□□□ -0.61
NXF1-209	ENST00000531474	INTS4	Q96HW7	963 aa	Known RBP	11.23	□□□□□ -0.61
NXF1-209	ENST00000531474	GBP4	Q96PP9	640 aa		11.23	□□□□□ -0.61
NXF1-209	ENST00000531474	SEC62	Q99442	399 aa	Known RBP	11.23	□□□□□ -0.61
NXF1-209	ENST00000531474	IDI2	Q9BXS1	227 aa		11.23	□□□□□ -0.61
NXF1-209	ENST00000531474	TM6SF1	Q9BZW5	370 aa		11.23	□□□□□ -0.61
NXF1-209	ENST00000531474	TMEM39B	Q9GZU3	492 aa		11.23	□□□□□ -0.61
NXF1-209	ENST00000531474	DDX4	Q9NQI0	724 aa	Known RBP	11.23	□□□□□ -0.61
NXF1-209	ENST00000531474	FAM198A	Q9UFP1	575 aa		11.23	□□□□□ -0.61
NXF1-209	ENST00000531474	PPP2R3B	Q9Y5P8	575 aa		11.23	□□□□□ -0.61
NXF1-209	ENST00000531474	CNTNAP1	P78357	1384 aa		11.23	□□□□□ -0.61
NXF1-209	ENST00000531474	DDX11L8	A8MPP1	907 aa		11.22	□□□□□ -0.61
NXF1-209	ENST00000531474	GPAA1	O43292	621 aa		11.22	□□□□□ -0.61
NXF1-209	ENST00000531474	PRKAB2	O43741	272 aa		11.22	□□□□□ -0.61
NXF1-209	ENST00000531474	PDIA4	P13667	645 aa	Known RBP	11.22	□□□□□ -0.61
NXF1-209	ENST00000531474	FLT1	P17948	1338 aa		11.22	□□□□□ -0.61
NXF1-209	ENST00000531474	FSTL1	Q12841	308 aa		11.22	□□□□□ -0.61
NXF1-209	ENST00000531474	MCMDC2	Q4G0Z9	681 aa		11.22	□□□□□ -0.61
NXF1-209	ENST00000531474	CCDC129	Q6ZRS4	1044 aa		11.22	□□□□□ -0.61
NXF1-209	ENST00000531474	FAM83A	Q86UY5	434 aa		11.22	□□□□□ -0.61
NXF1-209	ENST00000531474	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	11.22	□□□□□ -0.61
NXF1-209	ENST00000531474	SPRYD3	Q8NCJ5	442 aa		11.22	□□□□□ -0.61
NXF1-209	ENST00000531474	KCNB2	Q92953	911 aa		11.22	□□□□□ -0.61
NXF1-209	ENST00000531474	CDCA5	Q96FF9	252 aa		11.22	□□□□□ -0.61
NXF1-209	ENST00000531474	ZNF408	Q9H9D4	720 aa		11.22	□□□□□ -0.61
NXF1-209	ENST00000531474	HELLS	Q9NRZ9	838 aa		11.22	□□□□□ -0.61
NXF1-209	ENST00000531474	SLC4A4	Q9Y6R1	1079 aa		11.22	□□□□□ -0.61
NXF1-209	ENST00000531474	MYH7	P12883	1935 aa		11.21	□□□□□ -0.61
NXF1-209	ENST00000531474	ECM29	Q5VYK3	1845 aa		11.21	□□□□□ -0.61
NXF1-209	ENST00000531474	GOLGA6L22	H0YM25	854 aa		11.21	□□□□□ -0.61
NXF1-209	ENST00000531474	ENTPD3	O75355	529 aa		11.21	□□□□□ -0.61
NXF1-209	ENST00000531474	ITGBL1	O95965	494 aa	Predicted RBP	11.21	□□□□□ -0.61
NXF1-209	ENST00000531474	FMR1	Q06787	632 aa	Known RBP eCLIP	11.21	□□□□□ -0.61
NXF1-209	ENST00000531474	RAB3GAP1	Q15042	981 aa		11.21	□□□□□ -0.61
NXF1-209	ENST00000531474	CDAN1	Q8IWY9	1227 aa		11.21	□□□□□ -0.61
NXF1-209	ENST00000531474	ZFPM1	Q8IX07	1006 aa		11.21	□□□□□ -0.61
NXF1-209	ENST00000531474	SDR42E1	Q8WUS8	393 aa		11.21	□□□□□ -0.61
NXF1-209	ENST00000531474	FAM151A	Q8WW52	585 aa		11.21	□□□□□ -0.61
NXF1-209	ENST00000531474	MAP4K1	Q92918	833 aa		11.21	□□□□□ -0.61
NXF1-209	ENST00000531474	STRBP	Q96SI9	672 aa	Known RBP	11.21	□□□□□ -0.61
NXF1-209	ENST00000531474	OSBPL5	Q9H0X9	879 aa	Predicted RBP	11.21	□□□□□ -0.61
NXF1-209	ENST00000531474	SAP30BP	Q9UHR5	308 aa	Known RBP	11.21	□□□□□ -0.61
NXF1-209	ENST00000531474	CCDC171	Q6TFL3	1326 aa		11.2	□□□□□ -0.62
NXF1-209	ENST00000531474	APP	P05067	770 aa		11.2	□□□□□ -0.62
NXF1-209	ENST00000531474	GNAT2	P19087	354 aa		11.2	□□□□□ -0.62
NXF1-209	ENST00000531474	MCM4	P33991	863 aa		11.2	□□□□□ -0.62
NXF1-209	ENST00000531474	NF2	P35240	595 aa		11.2	□□□□□ -0.62
NXF1-209	ENST00000531474	KRT32	Q14532	448 aa		11.2	□□□□□ -0.62
NXF1-209	ENST00000531474	NECTIN1	Q15223	517 aa		11.2	□□□□□ -0.62
NXF1-209	ENST00000531474	SKOR2	Q2VWA4	1001 aa	Predicted RBP	11.2	□□□□□ -0.62
NXF1-209	ENST00000531474	SLC4A8	Q2Y0W8	1093 aa		11.2	□□□□□ -0.62
NXF1-209	ENST00000531474	TSGA10IP	Q3SY00	556 aa		11.2	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms