RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 TBC1D8O95759 1140 aa19.83■□□□□ 0.77
LSM1-205ENST00000523511 RRP1P56182 461 aaKnown RBP19.83■□□□□ 0.77
LSM1-205ENST00000523511 PPP4CP60510 307 aa19.83■□□□□ 0.77
LSM1-205ENST00000523511 PPATQ06203 517 aa19.83■□□□□ 0.77
LSM1-205ENST00000523511 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.83■□□□□ 0.77
LSM1-205ENST00000523511 ZKSCAN4Q969J2 545 aaPredicted RBP19.83■□□□□ 0.77
LSM1-205ENST00000523511 OTUD5Q96G74 571 aa19.83■□□□□ 0.77
LSM1-205ENST00000523511 ZNF112Q9UJU3 913 aa19.83■□□□□ 0.77
LSM1-205ENST00000523511 TESPA1A2RU30 521 aaPredicted RBP19.82■□□□□ 0.76
LSM1-205ENST00000523511 CETPP11597 493 aa19.82■□□□□ 0.76
LSM1-205ENST00000523511 RHBDL3P58872 404 aa19.82■□□□□ 0.76
LSM1-205ENST00000523511 SNAPC2Q13487 334 aa19.82■□□□□ 0.76
LSM1-205ENST00000523511 DHX36Q9H2U1 1008 aaKnown RBP19.82■□□□□ 0.76
LSM1-205ENST00000523511 PICK1Q9NRD5 415 aa19.82■□□□□ 0.76
LSM1-205ENST00000523511 CYP7A1P22680 504 aa19.81■□□□□ 0.76
LSM1-205ENST00000523511 ZFPM1Q8IX07 1006 aa19.81■□□□□ 0.76
LSM1-205ENST00000523511 AATFQ9NY61 560 aaKnown RBP eCLIP19.81■□□□□ 0.76
LSM1-205ENST00000523511 MYH13Q9UKX3 1938 aa19.8■□□□□ 0.76
LSM1-205ENST00000523511 CCL15-CCL14A0A0B4J2E2 113 aa19.8■□□□□ 0.76
LSM1-205ENST00000523511 GPR25O00155 361 aa19.8■□□□□ 0.76
LSM1-205ENST00000523511 TBC1D12O60347 775 aa19.8■□□□□ 0.76
LSM1-205ENST00000523511 PPIL2Q13356 520 aa19.8■□□□□ 0.76
LSM1-205ENST00000523511 DGKZQ13574 1117 aa19.8■□□□□ 0.76
LSM1-205ENST00000523511 CCL15Q16663 113 aa19.8■□□□□ 0.76
LSM1-205ENST00000523511 ZNF384Q8TF68 577 aa19.8■□□□□ 0.76
LSM1-205ENST00000523511 PIH1D3Q9NQM4 214 aaKnown RBP19.8■□□□□ 0.76
LSM1-205ENST00000523511 ZBTB47Q9UFB7 747 aaPredicted RBP19.8■□□□□ 0.76
LSM1-205ENST00000523511 SNCAIPQ9Y6H5 919 aa19.8■□□□□ 0.76
LSM1-205ENST00000523511 FKTNO75072 461 aa19.79■□□□□ 0.76
LSM1-205ENST00000523511 GJA5P36382 358 aa19.79■□□□□ 0.76
LSM1-205ENST00000523511 MAP3K10Q02779 954 aa19.79■□□□□ 0.76
LSM1-205ENST00000523511 AAMPQ13685 434 aa19.79■□□□□ 0.76
LSM1-205ENST00000523511 PKN2Q16513 984 aaKnown RBP19.79■□□□□ 0.76
LSM1-205ENST00000523511 NOL9Q5SY16 702 aaKnown RBP19.79■□□□□ 0.76
LSM1-205ENST00000523511 GPATCH3Q96I76 525 aa19.79■□□□□ 0.76
LSM1-205ENST00000523511 TRIM34Q9BYJ4 488 aa19.79■□□□□ 0.76
LSM1-205ENST00000523511 OSBPL5Q9H0X9 879 aaPredicted RBP19.79■□□□□ 0.76
LSM1-205ENST00000523511 DCTPP1Q9H773 170 aa19.79■□□□□ 0.76
LSM1-205ENST00000523511 PI4KBQ9UBF8 816 aa19.79■□□□□ 0.76
LSM1-205ENST00000523511 DDTLA6NHG4 134 aaPredicted RBP19.78■□□□□ 0.76
LSM1-205ENST00000523511 CTNND1O60716 968 aaKnown RBP19.78■□□□□ 0.76
LSM1-205ENST00000523511 CAPN15O75808 1086 aa19.78■□□□□ 0.76
LSM1-205ENST00000523511 INPP5BP32019 993 aa19.78■□□□□ 0.76
LSM1-205ENST00000523511 ARHGEF6Q15052 776 aa19.78■□□□□ 0.76
LSM1-205ENST00000523511 CTU1Q7Z7A3 348 aaKnown RBP19.78■□□□□ 0.76
LSM1-205ENST00000523511 MAGEB6Q8N7X4 407 aa19.78■□□□□ 0.76
LSM1-205ENST00000523511 SH3RF3Q8TEJ3 882 aaPredicted RBP19.78■□□□□ 0.76
LSM1-205ENST00000523511 MS4A4AQ96JQ5 239 aa19.78■□□□□ 0.76
LSM1-205ENST00000523511 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.78■□□□□ 0.76
LSM1-205ENST00000523511 ZFYVE28Q9HCC9 887 aa19.78■□□□□ 0.76
LSM1-205ENST00000523511 ZCCHC17Q9NP64 241 aaKnown RBP19.78■□□□□ 0.76
LSM1-205ENST00000523511 DDX4Q9NQI0 724 aaKnown RBP19.78■□□□□ 0.76
LSM1-205ENST00000523511 HERC5Q9UII4 1024 aaKnown RBP19.78■□□□□ 0.76
LSM1-205ENST00000523511 CXCL11O14625 94 aa19.77■□□□□ 0.76
LSM1-205ENST00000523511 ATP5JP18859 108 aa19.77■□□□□ 0.76
LSM1-205ENST00000523511 FOXP4Q8IVH2 680 aaPredicted RBP19.77■□□□□ 0.76
LSM1-205ENST00000523511 SCYL3Q8IZE3 742 aa19.77■□□□□ 0.76
LSM1-205ENST00000523511 TGFBRAP1Q8WUH2 860 aa19.77■□□□□ 0.76
LSM1-205ENST00000523511 ZNF296Q8WUU4 475 aaPredicted RBP19.77■□□□□ 0.76
LSM1-205ENST00000523511 ABHD8Q96I13 439 aa19.77■□□□□ 0.76
LSM1-205ENST00000523511 DNAJC2Q99543 621 aaKnown RBP19.77■□□□□ 0.76
LSM1-205ENST00000523511 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.77■□□□□ 0.76
LSM1-205ENST00000523511 ATRNL1Q5VV63 1379 aa19.76■□□□□ 0.75
LSM1-205ENST00000523511 IGF2BP3O00425 579 aaKnown RBP eCLIP19.76■□□□□ 0.75
LSM1-205ENST00000523511 IRF6O14896 467 aa19.76■□□□□ 0.75
LSM1-205ENST00000523511 HLA-DOAP06340 250 aa19.76■□□□□ 0.75
LSM1-205ENST00000523511 USP5P45974 858 aa19.76■□□□□ 0.75
LSM1-205ENST00000523511 SLC9C2Q5TAH2 1124 aa19.76■□□□□ 0.75
LSM1-205ENST00000523511 SH3BP5LQ7L8J4 393 aa19.76■□□□□ 0.75
LSM1-205ENST00000523511 CNKSR2Q8WXI2 1034 aa19.76■□□□□ 0.75
LSM1-205ENST00000523511 MCOLN1Q9GZU1 580 aa19.76■□□□□ 0.75
LSM1-205ENST00000523511 RFX7Q2KHR2 1363 aa19.75■□□□□ 0.75
LSM1-205ENST00000523511 PHF20L1A8MW92 1017 aa19.75■□□□□ 0.75
LSM1-205ENST00000523511 GOLIM4O00461 696 aa19.75■□□□□ 0.75
LSM1-205ENST00000523511 ZSCAN25Q6NSZ9 544 aa19.75■□□□□ 0.75
LSM1-205ENST00000523511 TBC1D2Q9BYX2 928 aa19.75■□□□□ 0.75
LSM1-205ENST00000523511 ANTXR1Q9H6X2 564 aa19.75■□□□□ 0.75
LSM1-205ENST00000523511 TAF1CQ15572 869 aaPredicted RBP19.74■□□□□ 0.75
LSM1-205ENST00000523511 FASTKD5Q7L8L6 764 aaKnown RBP19.74■□□□□ 0.75
LSM1-205ENST00000523511 CRACR2BQ8N4Y2 399 aaPredicted RBP19.74■□□□□ 0.75
LSM1-205ENST00000523511 BRI3BPQ8WY22 251 aa19.74■□□□□ 0.75
LSM1-205ENST00000523511 ERO1AQ96HE7 468 aa19.74■□□□□ 0.75
LSM1-205ENST00000523511 PTPN18Q99952 460 aa19.74■□□□□ 0.75
LSM1-205ENST00000523511 BOLA2Q9H3K6 86 aa19.74■□□□□ 0.75
LSM1-205ENST00000523511 PAG1Q9NWQ8 432 aa19.74■□□□□ 0.75
LSM1-205ENST00000523511 ZHX2Q9Y6X8 837 aa19.74■□□□□ 0.75
LSM1-205ENST00000523511 COL2A1P02458 1487 aaPredicted RBP19.73■□□□□ 0.75
LSM1-205ENST00000523511 MAGEB6P1A0A0J9YX57 407 aa19.73■□□□□ 0.75
LSM1-205ENST00000523511 MAPKAPK5Q8IW41 473 aa19.73■□□□□ 0.75
LSM1-205ENST00000523511 HAUS7Q99871 368 aa19.73■□□□□ 0.75
LSM1-205ENST00000523511 ECHDC1Q9NTX5 307 aa19.73■□□□□ 0.75
LSM1-205ENST00000523511 KCNH4Q9UQ05 1017 aa19.73■□□□□ 0.75
LSM1-205ENST00000523511 NDUFB9Q9Y6M9 179 aa19.73■□□□□ 0.75
LSM1-205ENST00000523511 PTPRAP18433 802 aa19.72■□□□□ 0.75
LSM1-205ENST00000523511 SP3Q02447 781 aa19.72■□□□□ 0.75
LSM1-205ENST00000523511 CRHR2Q13324 411 aa19.72■□□□□ 0.75
LSM1-205ENST00000523511 ADGRA1Q86SQ6 560 aa19.72■□□□□ 0.75
LSM1-205ENST00000523511 TTC6Q86TZ1 520 aa19.72■□□□□ 0.75
LSM1-205ENST00000523511 MIGA1Q8NAN2 632 aa19.72■□□□□ 0.75
LSM1-205ENST00000523511 FLT1P17948 1338 aa19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms