RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 PROCA1Q8NCQ7 364 aaPredicted RBP11.45□□□□□ -0.58
PDGFRB-207ENST00000520579 BCAS4Q8TDM0 211 aa11.45□□□□□ -0.58
PDGFRB-207ENST00000520579 TRIM6Q9C030 488 aaPredicted RBP11.45□□□□□ -0.58
PDGFRB-207ENST00000520579 CTAGE9A4FU28 777 aa11.45□□□□□ -0.58
PDGFRB-207ENST00000520579 CCDC151A5D8V7 595 aa11.45□□□□□ -0.58
PDGFRB-207ENST00000520579 MYO1FO00160 1098 aa11.45□□□□□ -0.58
PDGFRB-207ENST00000520579 BEND6Q5SZJ8 279 aaPredicted RBP11.45□□□□□ -0.58
PDGFRB-207ENST00000520579 TADA2BQ86TJ2 420 aa11.45□□□□□ -0.58
PDGFRB-207ENST00000520579 FAM210AQ96ND0 272 aa11.45□□□□□ -0.58
PDGFRB-207ENST00000520579 ETAA1Q9NY74 926 aa11.45□□□□□ -0.58
PDGFRB-207ENST00000520579 PDIA3P30101 505 aaKnown RBP11.44□□□□□ -0.58
PDGFRB-207ENST00000520579 FMR1Q06787 632 aaKnown RBP eCLIP11.44□□□□□ -0.58
PDGFRB-207ENST00000520579 RRP12Q5JTH9 1297 aaKnown RBP11.44□□□□□ -0.58
PDGFRB-207ENST00000520579 IGSF22Q8N9C0 903 aa11.44□□□□□ -0.58
PDGFRB-207ENST00000520579 CEP89Q96ST8 783 aa11.44□□□□□ -0.58
PDGFRB-207ENST00000520579 VPS16Q9H269 839 aa11.44□□□□□ -0.58
PDGFRB-207ENST00000520579 DENND2AQ9ULE3 1009 aa11.44□□□□□ -0.58
PDGFRB-207ENST00000520579 GLI2P10070 1586 aa11.44□□□□□ -0.58
PDGFRB-207ENST00000520579 PLEKHG2Q9H7P9 1386 aa11.44□□□□□ -0.58
PDGFRB-207ENST00000520579 BACH1O14867 736 aa11.44□□□□□ -0.58
PDGFRB-207ENST00000520579 ERCC3P19447 782 aa11.44□□□□□ -0.58
PDGFRB-207ENST00000520579 IRX1P78414 480 aaPredicted RBP11.44□□□□□ -0.58
PDGFRB-207ENST00000520579 RAD9BQ6WBX8 426 aa11.44□□□□□ -0.58
PDGFRB-207ENST00000520579 UBE3BQ7Z3V4 1068 aa11.44□□□□□ -0.58
PDGFRB-207ENST00000520579 PROSER2Q86WR7 435 aaPredicted RBP11.44□□□□□ -0.58
PDGFRB-207ENST00000520579 KAT2BQ92831 832 aa11.44□□□□□ -0.58
PDGFRB-207ENST00000520579 EIF4E1BA6NMX2 242 aaKnown RBP11.44□□□□□ -0.58
PDGFRB-207ENST00000520579 EBAG9O00559 213 aa11.44□□□□□ -0.58
PDGFRB-207ENST00000520579 RBL2Q08999 1139 aa11.44□□□□□ -0.58
PDGFRB-207ENST00000520579 TSGA10IPQ3SY00 556 aa11.44□□□□□ -0.58
PDGFRB-207ENST00000520579 RALYLQ86SE5 291 aaKnown RBP11.44□□□□□ -0.58
PDGFRB-207ENST00000520579 TRIM74Q86UV6 250 aa11.44□□□□□ -0.58
PDGFRB-207ENST00000520579 TRIM73Q86UV7 250 aa11.44□□□□□ -0.58
PDGFRB-207ENST00000520579 PCMTD1Q96MG8 357 aaPredicted RBP11.44□□□□□ -0.58
PDGFRB-207ENST00000520579 NUP88Q99567 741 aaPredicted RBP11.44□□□□□ -0.58
PDGFRB-207ENST00000520579 CD248Q9HCU0 757 aa11.44□□□□□ -0.58
PDGFRB-207ENST00000520579 DBNLQ9UJU6 430 aaKnown RBP11.44□□□□□ -0.58
PDGFRB-207ENST00000520579 ADGRB1O14514 1584 aa11.43□□□□□ -0.58
PDGFRB-207ENST00000520579 EPHA10Q5JZY3 1008 aa11.43□□□□□ -0.58
PDGFRB-207ENST00000520579 CTCFLQ8NI51 663 aaPredicted RBP11.43□□□□□ -0.58
PDGFRB-207ENST00000520579 INTS13Q9NVM9 706 aa11.43□□□□□ -0.58
PDGFRB-207ENST00000520579 KIF1BO60333 1816 aa11.43□□□□□ -0.58
PDGFRB-207ENST00000520579 hCG_1642624A0A1W2PR95 340 aa11.43□□□□□ -0.58
PDGFRB-207ENST00000520579 TMCO5BA8MYB1 307 aa11.43□□□□□ -0.58
PDGFRB-207ENST00000520579 POLR2DO15514 142 aaKnown RBP11.43□□□□□ -0.58
PDGFRB-207ENST00000520579 LRRC59Q96AG4 307 aaKnown RBP11.43□□□□□ -0.58
PDGFRB-207ENST00000520579 ALG1Q9BT22 464 aa11.43□□□□□ -0.58
PDGFRB-207ENST00000520579 U3KPZ7 1027 aaPredicted RBP11.43□□□□□ -0.58
PDGFRB-207ENST00000520579 ATP7AQ04656 1500 aa11.43□□□□□ -0.58
PDGFRB-207ENST00000520579 INPP5BP32019 993 aa11.43□□□□□ -0.58
PDGFRB-207ENST00000520579 GNGT1P63211 74 aa11.43□□□□□ -0.58
PDGFRB-207ENST00000520579 GRIN1Q05586 938 aa11.43□□□□□ -0.58
PDGFRB-207ENST00000520579 BRD3Q15059 726 aa11.43□□□□□ -0.58
PDGFRB-207ENST00000520579 RBBP5Q15291 538 aaKnown RBP11.43□□□□□ -0.58
PDGFRB-207ENST00000520579 E2F5Q15329 346 aa11.43□□□□□ -0.58
PDGFRB-207ENST00000520579 MCMDC2Q4G0Z9 681 aa11.43□□□□□ -0.58
PDGFRB-207ENST00000520579 CCDC102BQ68D86 513 aa11.43□□□□□ -0.58
PDGFRB-207ENST00000520579 SPECC1LQ69YQ0 1117 aa11.43□□□□□ -0.58
PDGFRB-207ENST00000520579 ZNF530Q6P9A1 599 aaPredicted RBP11.43□□□□□ -0.58
PDGFRB-207ENST00000520579 KCNG4Q8TDN1 519 aa11.43□□□□□ -0.58
PDGFRB-207ENST00000520579 NOC3LQ8WTT2 800 aaKnown RBP11.43□□□□□ -0.58
PDGFRB-207ENST00000520579 ACBD3Q9H3P7 528 aa11.43□□□□□ -0.58
PDGFRB-207ENST00000520579 FAM169AQ9Y6X4 670 aa11.43□□□□□ -0.58
PDGFRB-207ENST00000520579 ATP7BP35670 1465 aa11.43□□□□□ -0.58
PDGFRB-207ENST00000520579 E7EWF7 191 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 PFKFB2O60825 505 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 CASP14P31944 242 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 ABCD1P33897 745 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 GGCXP38435 758 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 RNASE9P60153 205 aaKnown RBP11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 RSRC2Q7L4I2 434 aaKnown RBP11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 ATL2Q8NHH9 583 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 AKR1B15C9JRZ8 316 aaPredicted RBP11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 FDPSP14324 419 aaKnown RBP11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 PAX3P23760 479 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 CORO7P57737 925 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 PSME1Q06323 249 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 SNX1Q13596 522 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 NAA25Q14CX7 972 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 SWT1Q5T5J6 900 aaKnown RBP11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 TC2NQ8N9U0 490 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 SCLT1Q96NL6 688 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 KAT14Q9H8E8 782 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 INCENPQ9NQS7 918 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 HMG20BQ9P0W2 317 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 SERTAD1Q9UHV2 236 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 CDC23Q9UJX2 597 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 CARMIL3Q8ND23 1372 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 GRM8O00222 908 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 SKAP2O75563 359 aaPredicted RBP11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 PDCLQ13371 301 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 CC2D2BQ6DHV5 1058 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 NAA16Q6N069 864 aaPredicted RBP11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 SND1Q7KZF4 910 aaKnown RBP eCLIP11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 MIEF2Q96C03 454 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 TMEM165Q9HC07 324 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 SMARCAL1Q9NZC9 954 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 KCNJ14Q9UNX9 436 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 PRR36Q9H6K5 1346 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 CRB1P82279 1406 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms