RNA–Protein interactions for RNA: ENST00000517354.5

CPNE3-201, Transcript of copine 3, humanhuman

TSL 4

Gene CPNE3, Length 566 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-201ENST00000517354 PPP1R9AQ9ULJ8 1098 aa9.36□□□□□ -0.91
CPNE3-201ENST00000517354 SUPT16HQ9Y5B9 1047 aaKnown RBP9.36□□□□□ -0.91
CPNE3-201ENST00000517354 TIAF1O95411 115 aa9.35□□□□□ -0.91
CPNE3-201ENST00000517354 ERCC5P28715 1186 aaPredicted RBP9.35□□□□□ -0.91
CPNE3-201ENST00000517354 PTPN11Q06124 597 aaPredicted RBP9.35□□□□□ -0.91
CPNE3-201ENST00000517354 DOC2BQ14184 412 aa9.35□□□□□ -0.91
CPNE3-201ENST00000517354 ZNF394Q53GI3 561 aa9.35□□□□□ -0.91
CPNE3-201ENST00000517354 Q6ZS46 218 aa9.35□□□□□ -0.91
CPNE3-201ENST00000517354 C12orf40Q86WS4 652 aa9.35□□□□□ -0.91
CPNE3-201ENST00000517354 ZNF296Q8WUU4 475 aaPredicted RBP9.35□□□□□ -0.91
CPNE3-201ENST00000517354 SPON2Q9BUD6 331 aa9.35□□□□□ -0.91
CPNE3-201ENST00000517354 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.35□□□□□ -0.91
CPNE3-201ENST00000517354 SNCAIPQ9Y6H5 919 aa9.35□□□□□ -0.91
CPNE3-201ENST00000517354 IGHA1P01876 353 aa9.34□□□□□ -0.91
CPNE3-201ENST00000517354 ZC3H12AQ5D1E8 599 aaKnown RBP9.34□□□□□ -0.91
CPNE3-201ENST00000517354 BNC2Q6ZN30 1099 aaPredicted RBP9.34□□□□□ -0.91
CPNE3-201ENST00000517354 CDC37L1Q7L3B6 337 aa9.34□□□□□ -0.91
CPNE3-201ENST00000517354 FAM46AQ96IP4 442 aaKnown RBP9.34□□□□□ -0.91
CPNE3-201ENST00000517354 CRIM1Q9NZV1 1036 aa9.34□□□□□ -0.91
CPNE3-201ENST00000517354 PCDHGB7Q9Y5F8 929 aa9.34□□□□□ -0.91
CPNE3-201ENST00000517354 TMPRSS2O15393 492 aa9.33□□□□□ -0.92
CPNE3-201ENST00000517354 METTL16Q86W50 562 aaKnown RBP9.33□□□□□ -0.92
CPNE3-201ENST00000517354 KIAA0825Q8IV33 1275 aa9.33□□□□□ -0.92
CPNE3-201ENST00000517354 C2CD4AQ8NCU7 369 aaPredicted RBP9.33□□□□□ -0.92
CPNE3-201ENST00000517354 GATAD2BQ8WXI9 593 aa9.33□□□□□ -0.92
CPNE3-201ENST00000517354 RHOVQ96L33 236 aa9.33□□□□□ -0.92
CPNE3-201ENST00000517354 FANCD2OSQ96PS1 177 aa9.33□□□□□ -0.92
CPNE3-201ENST00000517354 CCSER2Q9H7U1 834 aa9.33□□□□□ -0.92
CPNE3-201ENST00000517354 CACNA2D2Q9NY47 1150 aa9.33□□□□□ -0.92
CPNE3-201ENST00000517354 DDX41Q9UJV9 622 aaKnown RBP9.33□□□□□ -0.92
CPNE3-201ENST00000517354 HIF3AQ9Y2N7 669 aa9.33□□□□□ -0.92
CPNE3-201ENST00000517354 RAB6AP20340 208 aa9.32□□□□□ -0.92
CPNE3-201ENST00000517354 ERVK-24P63145 666 aa9.32□□□□□ -0.92
CPNE3-201ENST00000517354 WIPI1Q5MNZ9 446 aaPredicted RBP9.32□□□□□ -0.92
CPNE3-201ENST00000517354 FBXL19Q6PCT2 694 aa9.32□□□□□ -0.92
CPNE3-201ENST00000517354 PLPPR2Q96GM1 343 aa9.32□□□□□ -0.92
CPNE3-201ENST00000517354 MYRFLQ96LU7 910 aa9.32□□□□□ -0.92
CPNE3-201ENST00000517354 STOML1Q9UBI4 398 aa9.32□□□□□ -0.92
CPNE3-201ENST00000517354 ACTL7BQ9Y614 415 aa9.32□□□□□ -0.92
CPNE3-201ENST00000517354 SHROOM4Q9ULL8 1493 aa9.32□□□□□ -0.92
CPNE3-201ENST00000517354 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.31□□□□□ -0.92
CPNE3-201ENST00000517354 PRAMEF27A3QJZ7 478 aa9.31□□□□□ -0.92
CPNE3-201ENST00000517354 F13A1P00488 732 aa9.31□□□□□ -0.92
CPNE3-201ENST00000517354 MAP4P27816 1152 aaKnown RBP9.31□□□□□ -0.92
CPNE3-201ENST00000517354 RPL6Q02878 288 aaKnown RBP9.31□□□□□ -0.92
CPNE3-201ENST00000517354 MAP7Q14244 749 aa9.31□□□□□ -0.92
CPNE3-201ENST00000517354 INPP5AQ14642 412 aa9.31□□□□□ -0.92
CPNE3-201ENST00000517354 NFKBIBQ15653 356 aa9.31□□□□□ -0.92
CPNE3-201ENST00000517354 PPM1JQ5JR12 505 aa9.31□□□□□ -0.92
CPNE3-201ENST00000517354 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.31□□□□□ -0.92
CPNE3-201ENST00000517354 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.31□□□□□ -0.92
CPNE3-201ENST00000517354 FBLIM1Q8WUP2 373 aa9.31□□□□□ -0.92
CPNE3-201ENST00000517354 GAL3ST3Q96A11 431 aa9.31□□□□□ -0.92
CPNE3-201ENST00000517354 SPOCK3Q9BQ16 436 aa9.31□□□□□ -0.92
CPNE3-201ENST00000517354 DISC1Q9NRI5 854 aa9.31□□□□□ -0.92
CPNE3-201ENST00000517354 TPSG1Q9NRR2 321 aa9.31□□□□□ -0.92
CPNE3-201ENST00000517354 ROBO2Q9HCK4 1378 aa9.31□□□□□ -0.92
CPNE3-201ENST00000517354 FAM95CA0A1B0GW59 222 aa9.3□□□□□ -0.92
CPNE3-201ENST00000517354 LOC105371045A0A1W2PR82 267 aa9.3□□□□□ -0.92
CPNE3-201ENST00000517354 TLR3O15455 904 aaKnown RBP9.3□□□□□ -0.92
CPNE3-201ENST00000517354 HCLS1P14317 486 aaPredicted RBP9.3□□□□□ -0.92
CPNE3-201ENST00000517354 ETF1P62495 437 aaKnown RBP9.3□□□□□ -0.92
CPNE3-201ENST00000517354 TTLL4Q14679 1199 aa9.3□□□□□ -0.92
CPNE3-201ENST00000517354 CWF19L2Q2TBE0 894 aaKnown RBP9.3□□□□□ -0.92
CPNE3-201ENST00000517354 SGO2Q562F6 1265 aa9.3□□□□□ -0.92
CPNE3-201ENST00000517354 LRFN4Q6PJG9 635 aa9.3□□□□□ -0.92
CPNE3-201ENST00000517354 PAOXQ6QHF9 649 aa9.3□□□□□ -0.92
CPNE3-201ENST00000517354 FAM196AQ6ZSG2 479 aa9.3□□□□□ -0.92
CPNE3-201ENST00000517354 BEND4Q6ZU67 534 aa9.3□□□□□ -0.92
CPNE3-201ENST00000517354 CLEC10AQ8IUN9 316 aa9.3□□□□□ -0.92
CPNE3-201ENST00000517354 FAM20CQ8IXL6 584 aa9.3□□□□□ -0.92
CPNE3-201ENST00000517354 ARMC10Q8N2F6 343 aa9.3□□□□□ -0.92
CPNE3-201ENST00000517354 RNF214Q8ND24 703 aa9.3□□□□□ -0.92
CPNE3-201ENST00000517354 SSBP4Q9BWG4 385 aaPredicted RBP9.3□□□□□ -0.92
CPNE3-201ENST00000517354 TGIF2Q9GZN2 237 aa9.3□□□□□ -0.92
CPNE3-201ENST00000517354 FAM105AQ9NUU6 356 aa9.3□□□□□ -0.92
CPNE3-201ENST00000517354 ADAMTS1Q9UHI8 967 aa9.3□□□□□ -0.92
CPNE3-201ENST00000517354 RAXQ9Y2V3 346 aa9.3□□□□□ -0.92
CPNE3-201ENST00000517354 FANCGO15287 622 aa9.29□□□□□ -0.92
CPNE3-201ENST00000517354 ITGB2P05107 769 aa9.29□□□□□ -0.92
CPNE3-201ENST00000517354 MCM4P33991 863 aa9.29□□□□□ -0.92
CPNE3-201ENST00000517354 RACK1P63244 317 aaKnown RBP9.29□□□□□ -0.92
CPNE3-201ENST00000517354 PDE4BQ07343 736 aa9.29□□□□□ -0.92
CPNE3-201ENST00000517354 APOBRQ0VD83 1088 aa9.29□□□□□ -0.92
CPNE3-201ENST00000517354 CDPF1Q6NVV7 123 aa9.29□□□□□ -0.92
CPNE3-201ENST00000517354 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.29□□□□□ -0.92
CPNE3-201ENST00000517354 SMYD4Q8IYR2 804 aaPredicted RBP9.29□□□□□ -0.92
CPNE3-201ENST00000517354 ZNF507Q8TCN5 953 aa9.29□□□□□ -0.92
CPNE3-201ENST00000517354 NKD1Q969G9 470 aa9.29□□□□□ -0.92
CPNE3-201ENST00000517354 LGR6Q9HBX8 967 aa9.29□□□□□ -0.92
CPNE3-201ENST00000517354 PCOLCE2Q9UKZ9 415 aa9.29□□□□□ -0.92
CPNE3-201ENST00000517354 DAGLAQ9Y4D2 1042 aa9.29□□□□□ -0.92
CPNE3-201ENST00000517354 CILPO75339 1184 aa9.28□□□□□ -0.92
CPNE3-201ENST00000517354 NFICP08651 508 aa9.28□□□□□ -0.92
CPNE3-201ENST00000517354 GNL2Q13823 731 aaKnown RBP9.28□□□□□ -0.92
CPNE3-201ENST00000517354 MPP2Q14168 576 aa9.28□□□□□ -0.92
CPNE3-201ENST00000517354 KCT2Q8NC54 265 aa9.28□□□□□ -0.92
CPNE3-201ENST00000517354 NT5C1AQ9BXI3 368 aa9.28□□□□□ -0.92
CPNE3-201ENST00000517354 USP35Q9P2H5 1018 aa9.28□□□□□ -0.92
CPNE3-201ENST00000517354 INPP5FQ9Y2H2 1132 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms