RNA–Protein interactions for RNA: ENST00000515609.1

TPM3-222, Transcript of tropomyosin 3, human

TSL 3

Gene TPM3, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM3-222	ENST00000515609	SDR42E1	Q8WUS8	393 aa		11.15	□□□□□ -0.62
TPM3-222	ENST00000515609	BRF1	Q92994	677 aa		11.15	□□□□□ -0.62
TPM3-222	ENST00000515609	ZDHHC15	Q96MV8	337 aa		11.15	□□□□□ -0.62
TPM3-222	ENST00000515609	SGIP1	Q9BQI5	828 aa		11.15	□□□□□ -0.62
TPM3-222	ENST00000515609	DBNDD1	Q9H9R9	158 aa		11.15	□□□□□ -0.62
TPM3-222	ENST00000515609	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	11.15	□□□□□ -0.62
TPM3-222	ENST00000515609	TMOD2	Q9NZR1	351 aa		11.15	□□□□□ -0.62
TPM3-222	ENST00000515609	MYO5A	Q9Y4I1	1855 aa	Known RBP	11.15	□□□□□ -0.63
TPM3-222	ENST00000515609	LAMA4	Q16363	1823 aa		11.14	□□□□□ -0.63
TPM3-222	ENST00000515609	WDR33	Q9C0J8	1336 aa	Known RBP	11.14	□□□□□ -0.63
TPM3-222	ENST00000515609	CCDC69	A6NI79	296 aa		11.14	□□□□□ -0.63
TPM3-222	ENST00000515609	IFIT3	O14879	490 aa	Known RBP	11.14	□□□□□ -0.63
TPM3-222	ENST00000515609	PRKAB2	O43741	272 aa		11.14	□□□□□ -0.63
TPM3-222	ENST00000515609	ORC4	O43929	436 aa		11.14	□□□□□ -0.63
TPM3-222	ENST00000515609	PFKFB2	O60825	505 aa		11.14	□□□□□ -0.63
TPM3-222	ENST00000515609	HLA-DOA	P06340	250 aa		11.14	□□□□□ -0.63
TPM3-222	ENST00000515609	FGR	P09769	529 aa		11.14	□□□□□ -0.63
TPM3-222	ENST00000515609	CALM1	P0DP23	149 aa		11.14	□□□□□ -0.63
TPM3-222	ENST00000515609	CALM2	P0DP24	149 aa		11.14	□□□□□ -0.63
TPM3-222	ENST00000515609	CALM3	P0DP25	149 aa		11.14	□□□□□ -0.63
TPM3-222	ENST00000515609	TOB2	Q14106	344 aa	Predicted RBP	11.14	□□□□□ -0.63
TPM3-222	ENST00000515609	DIXDC1	Q155Q3	683 aa		11.14	□□□□□ -0.63
TPM3-222	ENST00000515609	DACT2	Q5SW24	774 aa		11.14	□□□□□ -0.63
TPM3-222	ENST00000515609	CTR9	Q6PD62	1173 aa		11.14	□□□□□ -0.63
TPM3-222	ENST00000515609	OLFM4	Q6UX06	510 aa		11.14	□□□□□ -0.63
TPM3-222	ENST00000515609	NFXL1	Q6ZNB6	911 aa		11.14	□□□□□ -0.63
TPM3-222	ENST00000515609	STOX1	Q6ZVD7	989 aa		11.14	□□□□□ -0.63
TPM3-222	ENST00000515609	KLHL34	Q8N239	644 aa		11.14	□□□□□ -0.63
TPM3-222	ENST00000515609	RGS22	Q8NE09	1264 aa		11.14	□□□□□ -0.63
TPM3-222	ENST00000515609	AGBL3	Q8NEM8	1001 aa		11.14	□□□□□ -0.63
TPM3-222	ENST00000515609	ZNF384	Q8TF68	577 aa		11.14	□□□□□ -0.63
TPM3-222	ENST00000515609	ANP32E	Q9BTT0	268 aa		11.14	□□□□□ -0.63
TPM3-222	ENST00000515609	DHX36	Q9H2U1	1008 aa	Known RBP	11.14	□□□□□ -0.63
TPM3-222	ENST00000515609	JAG2	Q9Y219	1238 aa		11.14	□□□□□ -0.63
TPM3-222	ENST00000515609	SNED1	Q8TER0	1413 aa		11.13	□□□□□ -0.63
TPM3-222	ENST00000515609	CPLX1	O14810	134 aa		11.13	□□□□□ -0.63
TPM3-222	ENST00000515609	MYO1B	O43795	1136 aa		11.13	□□□□□ -0.63
TPM3-222	ENST00000515609	KDM4A	O75164	1064 aa		11.13	□□□□□ -0.63
TPM3-222	ENST00000515609	CPA1	P15085	419 aa		11.13	□□□□□ -0.63
TPM3-222	ENST00000515609	RPS12	P25398	132 aa	Known RBP	11.13	□□□□□ -0.63
TPM3-222	ENST00000515609	DDIT3	P35638	169 aa		11.13	□□□□□ -0.63
TPM3-222	ENST00000515609	CRK	P46108	304 aa		11.13	□□□□□ -0.63
TPM3-222	ENST00000515609	RBM5	P52756	815 aa	Known RBP eCLIP	11.13	□□□□□ -0.63
TPM3-222	ENST00000515609	TMEM67	Q5HYA8	995 aa		11.13	□□□□□ -0.63
TPM3-222	ENST00000515609	RRP12	Q5JTH9	1297 aa	Known RBP	11.13	□□□□□ -0.63
TPM3-222	ENST00000515609	C12orf60	Q5U649	245 aa		11.13	□□□□□ -0.63
TPM3-222	ENST00000515609	SGMS1	Q86VZ5	419 aa		11.13	□□□□□ -0.63
TPM3-222	ENST00000515609	TBC1D10C	Q8IV04	446 aa		11.13	□□□□□ -0.63
TPM3-222	ENST00000515609	ZNF444	Q8N0Y2	327 aa	Predicted RBP	11.13	□□□□□ -0.63
TPM3-222	ENST00000515609	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	11.13	□□□□□ -0.63
TPM3-222	ENST00000515609	GTF3C6	Q969F1	213 aa		11.13	□□□□□ -0.63
TPM3-222	ENST00000515609	MKNK2	Q9HBH9	465 aa		11.13	□□□□□ -0.63
TPM3-222	ENST00000515609	TPCN1	Q9ULQ1	816 aa		11.13	□□□□□ -0.63
TPM3-222	ENST00000515609	NAP1L2	Q9ULW6	460 aa	Predicted RBP	11.13	□□□□□ -0.63
TPM3-222	ENST00000515609	BCS1L	Q9Y276	419 aa		11.13	□□□□□ -0.63
TPM3-222	ENST00000515609	DAGLA	Q9Y4D2	1042 aa		11.13	□□□□□ -0.63
TPM3-222	ENST00000515609	SLC12A7	Q9Y666	1083 aa		11.13	□□□□□ -0.63
TPM3-222	ENST00000515609	TIAM2	Q8IVF5	1701 aa		11.12	□□□□□ -0.63
TPM3-222	ENST00000515609	PSD	A5PKW4	1024 aa	Predicted RBP	11.12	□□□□□ -0.63
TPM3-222	ENST00000515609	DDX11L8	A8MPP1	907 aa		11.12	□□□□□ -0.63
TPM3-222	ENST00000515609		B4E1Z4	1266 aa		11.12	□□□□□ -0.63
TPM3-222	ENST00000515609	VIL1	P09327	827 aa	Known RBP	11.12	□□□□□ -0.63
TPM3-222	ENST00000515609	PTGER2	P43116	358 aa		11.12	□□□□□ -0.63
TPM3-222	ENST00000515609	CTDSPL2	Q05D32	466 aa		11.12	□□□□□ -0.63
TPM3-222	ENST00000515609	WTAP	Q15007	396 aa		11.12	□□□□□ -0.63
TPM3-222	ENST00000515609	RAB3GAP1	Q15042	981 aa		11.12	□□□□□ -0.63
TPM3-222	ENST00000515609	ME3	Q16798	604 aa		11.12	□□□□□ -0.63
TPM3-222	ENST00000515609	RSBN1L	Q6PCB5	846 aa	Predicted RBP	11.12	□□□□□ -0.63
TPM3-222	ENST00000515609	CCDC83	Q8IWF9	413 aa		11.12	□□□□□ -0.63
TPM3-222	ENST00000515609	FAM184A	Q8NB25	1140 aa		11.12	□□□□□ -0.63
TPM3-222	ENST00000515609	TGFBRAP1	Q8WUH2	860 aa		11.12	□□□□□ -0.63
TPM3-222	ENST00000515609	USP40	Q9NVE5	1235 aa		11.12	□□□□□ -0.63
TPM3-222	ENST00000515609	SWAP70	Q9UH65	585 aa		11.12	□□□□□ -0.63
TPM3-222	ENST00000515609	ROBO3	Q96MS0	1386 aa		11.12	□□□□□ -0.63
TPM3-222	ENST00000515609	KLF18	A0A0U1RQI7	1052 aa		11.11	□□□□□ -0.63
TPM3-222	ENST00000515609	TSPY2	A6NKD2	308 aa		11.11	□□□□□ -0.63
TPM3-222	ENST00000515609	RANBP6	O60518	1105 aa	Known RBP	11.11	□□□□□ -0.63
TPM3-222	ENST00000515609	EIF6	P56537	245 aa	Known RBP	11.11	□□□□□ -0.63
TPM3-222	ENST00000515609	CIAPIN1	Q6FI81	312 aa		11.11	□□□□□ -0.63
TPM3-222	ENST00000515609	CATIP	Q7Z7H3	387 aa		11.11	□□□□□ -0.63
TPM3-222	ENST00000515609	CERS5	Q8N5B7	392 aa		11.11	□□□□□ -0.63
TPM3-222	ENST00000515609	WASF1	Q92558	559 aa		11.11	□□□□□ -0.63
TPM3-222	ENST00000515609	TRIM34	Q9BYJ4	488 aa		11.11	□□□□□ -0.63
TPM3-222	ENST00000515609	ZNF277	Q9NRM2	450 aa	Predicted RBP	11.11	□□□□□ -0.63
TPM3-222	ENST00000515609	FOXD4L1	Q9NU39	408 aa		11.11	□□□□□ -0.63
TPM3-222	ENST00000515609	ZSWIM5	Q9P217	1185 aa		11.11	□□□□□ -0.63
TPM3-222	ENST00000515609	MKRN1	Q9UHC7	482 aa	Known RBP	11.11	□□□□□ -0.63
TPM3-222	ENST00000515609	TAF6L	Q9Y6J9	622 aa		11.11	□□□□□ -0.63
TPM3-222	ENST00000515609	MYH2	Q9UKX2	1941 aa		11.11	□□□□□ -0.63
TPM3-222	ENST00000515609	FLT1	P17948	1338 aa		11.1	□□□□□ -0.63
TPM3-222	ENST00000515609	GOLGA8B	A8MQT2	603 aa		11.1	□□□□□ -0.63
TPM3-222	ENST00000515609		F8W031	263 aa	Predicted RBP	11.1	□□□□□ -0.63
TPM3-222	ENST00000515609	SH2B2	O14492	632 aa	Predicted RBP	11.1	□□□□□ -0.63
TPM3-222	ENST00000515609	ZBTB43	O43298	467 aa		11.1	□□□□□ -0.63
TPM3-222	ENST00000515609	USP17L8	P0C7I0	530 aa		11.1	□□□□□ -0.63
TPM3-222	ENST00000515609	PDIA3	P30101	505 aa	Known RBP	11.1	□□□□□ -0.63
TPM3-222	ENST00000515609	RHBDL3	P58872	404 aa		11.1	□□□□□ -0.63
TPM3-222	ENST00000515609	APOBR	Q0VD83	1088 aa		11.1	□□□□□ -0.63
TPM3-222	ENST00000515609	DLGAP5	Q15398	846 aa		11.1	□□□□□ -0.63
TPM3-222	ENST00000515609	CSPP1	Q1MSJ5	1256 aa		11.1	□□□□□ -0.63

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