RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 TP53INP2Q8IXH6 220 aa6.4□□□□□ -1.38
NUP54-212ENST00000513248 GATA6Q92908 595 aa6.4□□□□□ -1.38
NUP54-212ENST00000513248 TBC1D32Q96NH3 1257 aa6.4□□□□□ -1.38
NUP54-212ENST00000513248 TRIM56Q9BRZ2 755 aaKnown RBP6.4□□□□□ -1.38
NUP54-212ENST00000513248 FAM8A1Q9UBU6 413 aa6.4□□□□□ -1.38
NUP54-212ENST00000513248 DRD2P14416 443 aa6.39□□□□□ -1.39
NUP54-212ENST00000513248 MAOBP27338 520 aa6.39□□□□□ -1.39
NUP54-212ENST00000513248 ZNF326Q5BKZ1 582 aaKnown RBP6.39□□□□□ -1.39
NUP54-212ENST00000513248 HP1BP3Q5SSJ5 553 aaPredicted RBP6.39□□□□□ -1.39
NUP54-212ENST00000513248 FAM161BQ96MY7 647 aa6.39□□□□□ -1.39
NUP54-212ENST00000513248 ZFYVE1Q9HBF4 777 aa6.39□□□□□ -1.39
NUP54-212ENST00000513248 CTSBP07858 339 aa6.38□□□□□ -1.39
NUP54-212ENST00000513248 ADH5P11766 374 aa6.38□□□□□ -1.39
NUP54-212ENST00000513248 GSTT1P30711 240 aa6.38□□□□□ -1.39
NUP54-212ENST00000513248 ADMP35318 185 aa6.38□□□□□ -1.39
NUP54-212ENST00000513248 ZNF157P51786 506 aaPredicted RBP6.38□□□□□ -1.39
NUP54-212ENST00000513248 AP3B2Q13367 1082 aa6.38□□□□□ -1.39
NUP54-212ENST00000513248 MAP7Q14244 749 aa6.38□□□□□ -1.39
NUP54-212ENST00000513248 SHISA5Q8N114 240 aa6.38□□□□□ -1.39
NUP54-212ENST00000513248 CORO1BQ9BR76 489 aa6.38□□□□□ -1.39
NUP54-212ENST00000513248 PAK6Q9NQU5 681 aaPredicted RBP6.38□□□□□ -1.39
NUP54-212ENST00000513248 KIAA1522Q9P206 1035 aaPredicted RBP6.38□□□□□ -1.39
NUP54-212ENST00000513248 GPN3Q9UHW5 284 aaPredicted RBP6.38□□□□□ -1.39
NUP54-212ENST00000513248 PPM1HQ9ULR3 514 aa6.38□□□□□ -1.39
NUP54-212ENST00000513248 AKAP2Q9Y2D5 859 aa6.38□□□□□ -1.39
NUP54-212ENST00000513248 USP31Q70CQ4 1352 aa6.37□□□□□ -1.39
NUP54-212ENST00000513248 C8AP07357 584 aa6.37□□□□□ -1.39
NUP54-212ENST00000513248 USP17L7P0C7H9 530 aa6.37□□□□□ -1.39
NUP54-212ENST00000513248 EIF4BP23588 611 aaKnown RBP6.37□□□□□ -1.39
NUP54-212ENST00000513248 DUSP27Q5VZP5 1158 aa6.37□□□□□ -1.39
NUP54-212ENST00000513248 FAM170BA6NMN3 283 aa6.36□□□□□ -1.39
NUP54-212ENST00000513248 SORBS3O60504 671 aa6.36□□□□□ -1.39
NUP54-212ENST00000513248 ECEL1O95672 775 aa6.36□□□□□ -1.39
NUP54-212ENST00000513248 XPCQ01831 940 aaPredicted RBP6.36□□□□□ -1.39
NUP54-212ENST00000513248 PPP2R3AQ06190 1150 aa6.36□□□□□ -1.39
NUP54-212ENST00000513248 PSMD2Q13200 908 aa6.36□□□□□ -1.39
NUP54-212ENST00000513248 FLCNQ8NFG4 579 aa6.36□□□□□ -1.39
NUP54-212ENST00000513248 TMEM39AQ9NV64 488 aa6.36□□□□□ -1.39
NUP54-212ENST00000513248 ACTL7BQ9Y614 415 aa6.36□□□□□ -1.39
NUP54-212ENST00000513248 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.35□□□□□ -1.39
NUP54-212ENST00000513248 ST13P50502 369 aaKnown RBP6.35□□□□□ -1.39
NUP54-212ENST00000513248 PDE3AQ14432 1141 aa6.35□□□□□ -1.39
NUP54-212ENST00000513248 NECAB3Q96P71 396 aaPredicted RBP6.35□□□□□ -1.39
NUP54-212ENST00000513248 SEMA6CQ9H3T2 930 aa6.35□□□□□ -1.39
NUP54-212ENST00000513248 GSX1Q9H4S2 264 aaPredicted RBP6.35□□□□□ -1.39
NUP54-212ENST00000513248 ACSS3Q9H6R3 686 aa6.35□□□□□ -1.39
NUP54-212ENST00000513248 CACNA2D2Q9NY47 1150 aa6.35□□□□□ -1.39
NUP54-212ENST00000513248 SYNGAP1Q96PV0 1343 aa6.34□□□□□ -1.39
NUP54-212ENST00000513248 ENC1O14682 589 aa6.34□□□□□ -1.39
NUP54-212ENST00000513248 TPTE2Q6XPS3 522 aa6.34□□□□□ -1.39
NUP54-212ENST00000513248 STK11IPQ8N1F8 1099 aa6.34□□□□□ -1.39
NUP54-212ENST00000513248 ZNF428Q96B54 188 aa6.34□□□□□ -1.39
NUP54-212ENST00000513248 CRELD1Q96HD1 420 aa6.34□□□□□ -1.39
NUP54-212ENST00000513248 ZC3H7BQ9UGR2 993 aaKnown RBP6.34□□□□□ -1.39
NUP54-212ENST00000513248 RECKO95980 971 aa6.33□□□□□ -1.4
NUP54-212ENST00000513248 NFICP08651 508 aa6.33□□□□□ -1.4
NUP54-212ENST00000513248 GSTP1P09211 210 aaKnown RBP6.33□□□□□ -1.4
NUP54-212ENST00000513248 AKAP4Q5JQC9 854 aa6.33□□□□□ -1.4
NUP54-212ENST00000513248 MEI1Q5TIA1 1274 aa6.33□□□□□ -1.4
NUP54-212ENST00000513248 ZNF765Q7L2R6 523 aa6.33□□□□□ -1.4
NUP54-212ENST00000513248 PDZD3Q86UT5 571 aa6.33□□□□□ -1.4
NUP54-212ENST00000513248 SULF2Q8IWU5 870 aa6.33□□□□□ -1.4
NUP54-212ENST00000513248 RAD18Q9NS91 495 aa6.33□□□□□ -1.4
NUP54-212ENST00000513248 FBXO24O75426 580 aa6.32□□□□□ -1.4
NUP54-212ENST00000513248 PAPLNO95428 1278 aa6.32□□□□□ -1.4
NUP54-212ENST00000513248 SEZ6L2Q6UXD5 910 aa6.32□□□□□ -1.4
NUP54-212ENST00000513248 SV2BQ7L1I2 683 aa6.32□□□□□ -1.4
NUP54-212ENST00000513248 STK35Q8TDR2 534 aa6.32□□□□□ -1.4
NUP54-212ENST00000513248 BCL7CQ8WUZ0 217 aaPredicted RBP6.32□□□□□ -1.4
NUP54-212ENST00000513248 MISP3Q96FF7 219 aa6.32□□□□□ -1.4
NUP54-212ENST00000513248 WDR18Q9BV38 432 aa6.32□□□□□ -1.4
NUP54-212ENST00000513248 ZC3H12CQ9C0D7 883 aaKnown RBP6.32□□□□□ -1.4
NUP54-212ENST00000513248 CEP44Q9C0F1 390 aa6.32□□□□□ -1.4
NUP54-212ENST00000513248 CCDC86Q9H6F5 360 aaKnown RBP6.32□□□□□ -1.4
NUP54-212ENST00000513248 KRT82Q9NSB4 513 aa6.32□□□□□ -1.4
NUP54-212ENST00000513248 AP4E1Q9UPM8 1137 aa6.32□□□□□ -1.4
NUP54-212ENST00000513248 SLC5A6Q9Y289 635 aa6.32□□□□□ -1.4
NUP54-212ENST00000513248 BIN1O00499 593 aa6.31□□□□□ -1.4
NUP54-212ENST00000513248 AOC2O75106 756 aa6.31□□□□□ -1.4
NUP54-212ENST00000513248 PAGE1O75459 146 aa6.31□□□□□ -1.4
NUP54-212ENST00000513248 LIG1P18858 919 aa6.31□□□□□ -1.4
NUP54-212ENST00000513248 RAB6AP20340 208 aa6.31□□□□□ -1.4
NUP54-212ENST00000513248 BMP6P22004 513 aa6.31□□□□□ -1.4
NUP54-212ENST00000513248 NME2P22392 152 aa6.31□□□□□ -1.4
NUP54-212ENST00000513248 HNRNPUQ00839 825 aaKnown RBP eCLIP6.31□□□□□ -1.4
NUP54-212ENST00000513248 ZNF252P-AS1Q0IIN9 211 aa6.31□□□□□ -1.4
NUP54-212ENST00000513248 TAF1CQ15572 869 aaPredicted RBP6.31□□□□□ -1.4
NUP54-212ENST00000513248 OGFOD3Q6PK18 319 aa6.31□□□□□ -1.4
NUP54-212ENST00000513248 MRRFQ96E11 262 aaKnown RBP6.31□□□□□ -1.4
NUP54-212ENST00000513248 NOC4LQ9BVI4 516 aaKnown RBP6.31□□□□□ -1.4
NUP54-212ENST00000513248 BACH2Q9BYV9 841 aa6.31□□□□□ -1.4
NUP54-212ENST00000513248 LRRC4CQ9HCJ2 640 aa6.31□□□□□ -1.4
NUP54-212ENST00000513248 IGSF5Q9NSI5 407 aa6.31□□□□□ -1.4
NUP54-212ENST00000513248 FAM105AQ9NUU6 356 aa6.31□□□□□ -1.4
NUP54-212ENST00000513248 ARNTP27540 789 aa6.3□□□□□ -1.4
NUP54-212ENST00000513248 RASIP1Q5U651 963 aa6.3□□□□□ -1.4
NUP54-212ENST00000513248 DYMQ7RTS9 669 aa6.3□□□□□ -1.4
NUP54-212ENST00000513248 KCNB2Q92953 911 aa6.3□□□□□ -1.4
NUP54-212ENST00000513248 EMILIN2Q9BXX0 1053 aa6.3□□□□□ -1.4
NUP54-212ENST00000513248 KRTAP4-9Q9BYQ8 210 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms