RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 ERO1AQ96HE7 468 aa12.15□□□□□ -0.46
NUP54-203ENST00000504173 MYOZ2Q9NPC6 264 aa12.15□□□□□ -0.46
NUP54-203ENST00000504173 CRKP46108 304 aa12.14□□□□□ -0.47
NUP54-203ENST00000504173 RGS3P49796 1198 aa12.14□□□□□ -0.47
NUP54-203ENST00000504173 RBM5P52756 815 aaKnown RBP eCLIP12.14□□□□□ -0.47
NUP54-203ENST00000504173 GSTO1P78417 241 aa12.14□□□□□ -0.47
NUP54-203ENST00000504173 MECOMQ03112 1051 aa12.14□□□□□ -0.47
NUP54-203ENST00000504173 KIF4BQ2VIQ3 1234 aa12.14□□□□□ -0.47
NUP54-203ENST00000504173 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.14□□□□□ -0.47
NUP54-203ENST00000504173 SLF2Q8IX21 1173 aa12.14□□□□□ -0.47
NUP54-203ENST00000504173 TEKT1Q969V4 418 aa12.14□□□□□ -0.47
NUP54-203ENST00000504173 LRCH3Q96II8 777 aa12.14□□□□□ -0.47
NUP54-203ENST00000504173 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.14□□□□□ -0.47
NUP54-203ENST00000504173 SERPINA10Q9UK55 444 aa12.14□□□□□ -0.47
NUP54-203ENST00000504173 MAST2Q6P0Q8 1798 aa12.13□□□□□ -0.47
NUP54-203ENST00000504173 TTC28Q96AY4 2481 aa12.13□□□□□ -0.47
NUP54-203ENST00000504173 TRIM6-TRIM34B2RNG4 842 aa12.13□□□□□ -0.47
NUP54-203ENST00000504173 IGSF3O75054 1194 aa12.13□□□□□ -0.47
NUP54-203ENST00000504173 HDLBPQ00341 1268 aaKnown RBP12.13□□□□□ -0.47
NUP54-203ENST00000504173 DLGAP5Q15398 846 aa12.13□□□□□ -0.47
NUP54-203ENST00000504173 DIXDC1Q155Q3 683 aa12.13□□□□□ -0.47
NUP54-203ENST00000504173 CFAP100Q494V2 611 aa12.13□□□□□ -0.47
NUP54-203ENST00000504173 TTC22Q5TAA0 569 aa12.13□□□□□ -0.47
NUP54-203ENST00000504173 NAA16Q6N069 864 aaPredicted RBP12.13□□□□□ -0.47
NUP54-203ENST00000504173 MAGEB6Q8N7X4 407 aa12.13□□□□□ -0.47
NUP54-203ENST00000504173 KBTBD3Q8NAB2 608 aa12.13□□□□□ -0.47
NUP54-203ENST00000504173 NSUN4Q96CB9 384 aaKnown RBP12.13□□□□□ -0.47
NUP54-203ENST00000504173 FSD1Q9BTV5 496 aa12.13□□□□□ -0.47
NUP54-203ENST00000504173 DOCK2Q92608 1830 aa12.13□□□□□ -0.47
NUP54-203ENST00000504173 MYO5AQ9Y4I1 1855 aaKnown RBP12.12□□□□□ -0.47
NUP54-203ENST00000504173 LDHCP07864 332 aa12.12□□□□□ -0.47
NUP54-203ENST00000504173 CYP7A1P22680 504 aa12.12□□□□□ -0.47
NUP54-203ENST00000504173 HHIPL2Q6UWX4 724 aa12.12□□□□□ -0.47
NUP54-203ENST00000504173 RILPL2Q969X0 211 aa12.12□□□□□ -0.47
NUP54-203ENST00000504173 EVI5LQ96CN4 794 aa12.12□□□□□ -0.47
NUP54-203ENST00000504173 MRIQ9BWK5 157 aa12.12□□□□□ -0.47
NUP54-203ENST00000504173 EFCC1Q9HA90 598 aa12.12□□□□□ -0.47
NUP54-203ENST00000504173 DAGLAQ9Y4D2 1042 aa12.12□□□□□ -0.47
NUP54-203ENST00000504173 MROH7-TTC4A0A0A0MT08 1334 aa12.11□□□□□ -0.47
NUP54-203ENST00000504173 GAKO14976 1311 aa12.11□□□□□ -0.47
NUP54-203ENST00000504173 SPDYE2BA6NHP3 402 aa12.11□□□□□ -0.47
NUP54-203ENST00000504173 UBE2Q2LH0YL09 131 aa12.11□□□□□ -0.47
NUP54-203ENST00000504173 SPDYE6P0CI01 402 aa12.11□□□□□ -0.47
NUP54-203ENST00000504173 PDE6AP16499 860 aa12.11□□□□□ -0.47
NUP54-203ENST00000504173 LRRFIP1Q32MZ4 808 aaKnown RBP12.11□□□□□ -0.47
NUP54-203ENST00000504173 SLC9C2Q5TAH2 1124 aa12.11□□□□□ -0.47
NUP54-203ENST00000504173 ZSCAN25Q6NSZ9 544 aa12.11□□□□□ -0.47
NUP54-203ENST00000504173 TMED8Q6PL24 325 aaPredicted RBP12.11□□□□□ -0.47
NUP54-203ENST00000504173 MOB2Q70IA6 237 aa12.11□□□□□ -0.47
NUP54-203ENST00000504173 NBPF11Q86T75 865 aa12.11□□□□□ -0.47
NUP54-203ENST00000504173 MTMR14Q8NCE2 650 aa12.11□□□□□ -0.47
NUP54-203ENST00000504173 ZNF384Q8TF68 577 aa12.11□□□□□ -0.47
NUP54-203ENST00000504173 DPF3Q92784 378 aa12.11□□□□□ -0.47
NUP54-203ENST00000504173 ZDHHC15Q96MV8 337 aa12.11□□□□□ -0.47
NUP54-203ENST00000504173 NOL10Q9BSC4 688 aaKnown RBP12.11□□□□□ -0.47
NUP54-203ENST00000504173 PCDHAC2Q9Y5I4 1007 aa12.11□□□□□ -0.47
NUP54-203ENST00000504173 MYH2Q9UKX2 1941 aa12.11□□□□□ -0.47
NUP54-203ENST00000504173 ASTN2O75129 1339 aaPredicted RBP12.11□□□□□ -0.47
NUP54-203ENST00000504173 ZNF532Q9HCE3 1301 aa12.11□□□□□ -0.47
NUP54-203ENST00000504173 MYH7P12883 1935 aa12.1□□□□□ -0.47
NUP54-203ENST00000504173 WNT10BO00744 389 aa12.1□□□□□ -0.47
NUP54-203ENST00000504173 MYO1BO43795 1136 aa12.1□□□□□ -0.47
NUP54-203ENST00000504173 GSPT1P15170 499 aaKnown RBP12.1□□□□□ -0.47
NUP54-203ENST00000504173 BTDP43251 543 aa12.1□□□□□ -0.47
NUP54-203ENST00000504173 INHBEP58166 350 aa12.1□□□□□ -0.47
NUP54-203ENST00000504173 SLC4A8Q2Y0W8 1093 aa12.1□□□□□ -0.47
NUP54-203ENST00000504173 DEFB123Q8N688 67 aa12.1□□□□□ -0.47
NUP54-203ENST00000504173 FAM163AQ96GL9 167 aaPredicted RBP12.1□□□□□ -0.47
NUP54-203ENST00000504173 ZBED3Q96IU2 234 aaPredicted RBP12.1□□□□□ -0.47
NUP54-203ENST00000504173 PRMT6Q96LA8 375 aaPredicted RBP12.1□□□□□ -0.47
NUP54-203ENST00000504173 RNF113AO15541 343 aaKnown RBP12.09□□□□□ -0.47
NUP54-203ENST00000504173 BAG3O95817 575 aa12.09□□□□□ -0.47
NUP54-203ENST00000504173 ZFYP08048 801 aaPredicted RBP12.09□□□□□ -0.47
NUP54-203ENST00000504173 COL9A1P20849 921 aa12.09□□□□□ -0.47
NUP54-203ENST00000504173 ADD2P35612 726 aa12.09□□□□□ -0.47
NUP54-203ENST00000504173 NBPF9Q3BBW0 867 aa12.09□□□□□ -0.47
NUP54-203ENST00000504173 SLC9C1Q4G0N8 1177 aa12.09□□□□□ -0.47
NUP54-203ENST00000504173 ANGEL2Q5VTE6 544 aaKnown RBP12.09□□□□□ -0.47
NUP54-203ENST00000504173 APOBEC3HQ6NTF7 200 aaKnown RBP12.09□□□□□ -0.47
NUP54-203ENST00000504173 UBE2Q1Q7Z7E8 422 aa12.09□□□□□ -0.47
NUP54-203ENST00000504173 IFNL1Q8IU54 200 aa12.09□□□□□ -0.47
NUP54-203ENST00000504173 CD99L2Q8TCZ2 262 aa12.09□□□□□ -0.47
NUP54-203ENST00000504173 MTMR10Q9NXD2 777 aa12.09□□□□□ -0.47
NUP54-203ENST00000504173 AATFQ9NY61 560 aaKnown RBP eCLIP12.09□□□□□ -0.47
NUP54-203ENST00000504173 NR2E3Q9Y5X4 410 aa12.09□□□□□ -0.47
NUP54-203ENST00000504173 RFX7Q2KHR2 1363 aa12.08□□□□□ -0.48
NUP54-203ENST00000504173 AK9Q5TCS8 1911 aa12.08□□□□□ -0.48
NUP54-203ENST00000504173 GPR75-ASB3A0A0A6YYF3 556 aa12.08□□□□□ -0.48
NUP54-203ENST00000504173 TCRBV5S4A2TA0A5A2 114 aa12.08□□□□□ -0.48
NUP54-203ENST00000504173 CLRN2A0PK11 232 aa12.08□□□□□ -0.48
NUP54-203ENST00000504173 CHGBP05060 677 aa12.08□□□□□ -0.48
NUP54-203ENST00000504173 SDSP20132 328 aa12.08□□□□□ -0.48
NUP54-203ENST00000504173 PLA2G5P39877 138 aa12.08□□□□□ -0.48
NUP54-203ENST00000504173 UBE3CQ15386 1083 aa12.08□□□□□ -0.48
NUP54-203ENST00000504173 SPDYE2Q495Y8 402 aa12.08□□□□□ -0.48
NUP54-203ENST00000504173 SLFNL1Q499Z3 407 aa12.08□□□□□ -0.48
NUP54-203ENST00000504173 SPRYD7Q5W111 196 aa12.08□□□□□ -0.48
NUP54-203ENST00000504173 ADGRA1Q86SQ6 560 aa12.08□□□□□ -0.48
NUP54-203ENST00000504173 MIGA1Q8NAN2 632 aa12.08□□□□□ -0.48
NUP54-203ENST00000504173 TDRD3Q9H7E2 651 aaKnown RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms