RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 DIAPH1O60610 1272 aaKnown RBP5.97□□□□□ -1.45
USP54-216ENST00000498143 HMGCRP04035 888 aa5.97□□□□□ -1.45
USP54-216ENST00000498143 CCDC173Q0VFZ6 552 aa5.97□□□□□ -1.45
USP54-216ENST00000498143 CAVIN4Q5BKX8 364 aa5.97□□□□□ -1.45
USP54-216ENST00000498143 CT47A1Q5JQC4 288 aaPredicted RBP5.97□□□□□ -1.45
USP54-216ENST00000498143 APBB1IPQ7Z5R6 666 aaPredicted RBP5.97□□□□□ -1.45
USP54-216ENST00000498143 SLC51AQ86UW1 340 aa5.97□□□□□ -1.45
USP54-216ENST00000498143 WNK4Q96J92 1243 aa5.97□□□□□ -1.45
USP54-216ENST00000498143 MPHOSPH6Q99547 160 aaKnown RBP5.97□□□□□ -1.45
USP54-216ENST00000498143 VPS33BQ9H267 617 aa5.97□□□□□ -1.45
USP54-216ENST00000498143 CERS4Q9HA82 394 aa5.97□□□□□ -1.45
USP54-216ENST00000498143 CAMTA1Q9Y6Y1 1673 aa5.97□□□□□ -1.45
USP54-216ENST00000498143 ADCY9O60503 1353 aa5.97□□□□□ -1.45
USP54-216ENST00000498143 ZNF500O60304 480 aaPredicted RBP5.97□□□□□ -1.45
USP54-216ENST00000498143 U2AF1L5P0DN76 240 aaPredicted RBP5.97□□□□□ -1.45
USP54-216ENST00000498143 U2AF1Q01081 240 aaKnown RBP eCLIP5.97□□□□□ -1.45
USP54-216ENST00000498143 NONOQ15233 471 aaKnown RBP eCLIP5.97□□□□□ -1.45
USP54-216ENST00000498143 PPP4R4Q6NUP7 873 aa5.97□□□□□ -1.45
USP54-216ENST00000498143 GPR153Q6NV75 609 aa5.97□□□□□ -1.45
USP54-216ENST00000498143 DEFB129Q9H1M3 183 aa5.97□□□□□ -1.45
USP54-216ENST00000498143 ZHX3Q9H4I2 956 aa5.97□□□□□ -1.45
USP54-216ENST00000498143 CABP5Q9NP86 173 aa5.97□□□□□ -1.45
USP54-216ENST00000498143 BSDC1Q9NW68 430 aaPredicted RBP5.97□□□□□ -1.45
USP54-216ENST00000498143 SWAP70Q9UH65 585 aa5.97□□□□□ -1.45
USP54-216ENST00000498143 KIDINS220Q9ULH0 1771 aa5.97□□□□□ -1.45
USP54-216ENST00000498143 LOC102724159A0A0B4J2E5 919 aa5.97□□□□□ -1.45
USP54-216ENST00000498143 DCXO43602 365 aa5.97□□□□□ -1.45
USP54-216ENST00000498143 HCLS1P14317 486 aaPredicted RBP5.97□□□□□ -1.45
USP54-216ENST00000498143 CLCN1P35523 988 aa5.97□□□□□ -1.45
USP54-216ENST00000498143 CDR1P51861 262 aa5.97□□□□□ -1.45
USP54-216ENST00000498143 PWP2Q15269 919 aaKnown RBP5.97□□□□□ -1.45
USP54-216ENST00000498143 RNF168Q8IYW5 571 aaPredicted RBP5.97□□□□□ -1.45
USP54-216ENST00000498143 COL26A1Q96A83 441 aa5.97□□□□□ -1.45
USP54-216ENST00000498143 AP5M1Q9H0R1 490 aa5.97□□□□□ -1.45
USP54-216ENST00000498143 RNF39Q9H2S5 420 aa5.97□□□□□ -1.45
USP54-216ENST00000498143 SEMA6BQ9H3T3 888 aa5.97□□□□□ -1.45
USP54-216ENST00000498143 GOPCQ9HD26 462 aa5.97□□□□□ -1.45
USP54-216ENST00000498143 INCENPQ9NQS7 918 aa5.97□□□□□ -1.45
USP54-216ENST00000498143 DDX11L8A8MPP1 907 aa5.96□□□□□ -1.45
USP54-216ENST00000498143 A1BGP04217 495 aa5.96□□□□□ -1.45
USP54-216ENST00000498143 ELMSAN1Q6PJG2 1045 aa5.96□□□□□ -1.45
USP54-216ENST00000498143 ASB2Q96Q27 587 aa5.96□□□□□ -1.45
USP54-216ENST00000498143 RUFY1Q96T51 708 aa5.96□□□□□ -1.45
USP54-216ENST00000498143 PPP1R12CQ9BZL4 782 aa5.96□□□□□ -1.45
USP54-216ENST00000498143 SH3TC1Q8TE82 1336 aa5.96□□□□□ -1.45
USP54-216ENST00000498143 ZBTB24O43167 697 aaPredicted RBP5.96□□□□□ -1.46
USP54-216ENST00000498143 ATP2B4P23634 1241 aa5.96□□□□□ -1.46
USP54-216ENST00000498143 PIP4K2AP48426 406 aaPredicted RBP5.96□□□□□ -1.46
USP54-216ENST00000498143 ERO1BQ86YB8 467 aa5.96□□□□□ -1.46
USP54-216ENST00000498143 AGBL3Q8NEM8 1001 aa5.96□□□□□ -1.46
USP54-216ENST00000498143 PNISRQ8TF01 805 aaKnown RBP5.96□□□□□ -1.46
USP54-216ENST00000498143 ARMC5Q96C12 935 aa5.96□□□□□ -1.46
USP54-216ENST00000498143 SEPT11Q9NVA2 429 aaKnown RBP5.96□□□□□ -1.46
USP54-216ENST00000498143 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP5.96□□□□□ -1.46
USP54-216ENST00000498143 RGS2P41220 211 aa5.96□□□□□ -1.46
USP54-216ENST00000498143 SESN3P58005 492 aa5.96□□□□□ -1.46
USP54-216ENST00000498143 RPS8P62241 208 aaKnown RBP5.96□□□□□ -1.46
USP54-216ENST00000498143 SETDB1Q15047 1291 aa5.96□□□□□ -1.46
USP54-216ENST00000498143 FAM117BQ6P1L5 589 aa5.96□□□□□ -1.46
USP54-216ENST00000498143 CLEC4GQ6UXB4 293 aa5.96□□□□□ -1.46
USP54-216ENST00000498143 FLCNQ8NFG4 579 aa5.96□□□□□ -1.46
USP54-216ENST00000498143 MIPOL1Q8TD10 442 aa5.96□□□□□ -1.46
USP54-216ENST00000498143 TCHPQ9BT92 498 aa5.96□□□□□ -1.46
USP54-216ENST00000498143 ANKFY1Q9P2R3 1169 aa5.96□□□□□ -1.46
USP54-216ENST00000498143 ZC3H13Q5T200 1668 aaKnown RBP5.96□□□□□ -1.46
USP54-216ENST00000498143 USP32Q8NFA0 1604 aa5.96□□□□□ -1.46
USP54-216ENST00000498143 ACAP1Q15027 740 aa5.95□□□□□ -1.46
USP54-216ENST00000498143 BRD3Q15059 726 aa5.95□□□□□ -1.46
USP54-216ENST00000498143 DBN1Q16643 649 aa5.95□□□□□ -1.46
USP54-216ENST00000498143 ZNF280DQ6N043 979 aa5.95□□□□□ -1.46
USP54-216ENST00000498143 ERMP1Q7Z2K6 904 aa5.95□□□□□ -1.46
USP54-216ENST00000498143 MSL3Q8N5Y2 521 aaKnown RBP5.95□□□□□ -1.46
USP54-216ENST00000498143 PRPF38AQ8NAV1 312 aaKnown RBP5.95□□□□□ -1.46
USP54-216ENST00000498143 GOLGA6L4A6NEF3 574 aa5.95□□□□□ -1.46
USP54-216ENST00000498143 RARBP10826 455 aa5.95□□□□□ -1.46
USP54-216ENST00000498143 GJA8P48165 433 aa5.95□□□□□ -1.46
USP54-216ENST00000498143 TMEM67Q5HYA8 995 aa5.95□□□□□ -1.46
USP54-216ENST00000498143 PCMTD1Q96MG8 357 aaPredicted RBP5.95□□□□□ -1.46
USP54-216ENST00000498143 FEZ2Q9UHY8 353 aaPredicted RBP5.95□□□□□ -1.46
USP54-216ENST00000498143 AOX1Q06278 1338 aa5.95□□□□□ -1.46
USP54-216ENST00000498143 FGBP02675 491 aa5.95□□□□□ -1.46
USP54-216ENST00000498143 MCTP2Q6DN12 878 aa5.95□□□□□ -1.46
USP54-216ENST00000498143 LEKR1Q6ZMV7 388 aa5.95□□□□□ -1.46
USP54-216ENST00000498143 OTUD6BQ8N6M0 293 aa5.95□□□□□ -1.46
USP54-216ENST00000498143 NUP133Q8WUM0 1156 aa5.95□□□□□ -1.46
USP54-216ENST00000498143 DDX12PQ92771 950 aa5.95□□□□□ -1.46
USP54-216ENST00000498143 RMDN2Q96LZ7 410 aa5.95□□□□□ -1.46
USP54-216ENST00000498143 ZNF341Q9BYN7 854 aa5.95□□□□□ -1.46
USP54-216ENST00000498143 GBP2P32456 591 aaPredicted RBP5.95□□□□□ -1.46
USP54-216ENST00000498143 NDUFV1P49821 464 aa5.95□□□□□ -1.46
USP54-216ENST00000498143 NFE2L2Q16236 605 aa5.95□□□□□ -1.46
USP54-216ENST00000498143 PSRC1Q6PGN9 363 aaPredicted RBP5.95□□□□□ -1.46
USP54-216ENST00000498143 ZNF333Q96JL9 665 aa5.95□□□□□ -1.46
USP54-216ENST00000498143 ZMAT2Q96NC0 199 aaKnown RBP5.95□□□□□ -1.46
USP54-216ENST00000498143 CRAMP1Q96RY5 1269 aa5.95□□□□□ -1.46
USP54-216ENST00000498143 IGFLR1Q9H665 355 aa5.95□□□□□ -1.46
USP54-216ENST00000498143 STARD7Q9NQZ5 370 aa5.95□□□□□ -1.46
USP54-216ENST00000498143 CEP83Q9Y592 693 aa5.95□□□□□ -1.46
USP54-216ENST00000498143 ZFYVE9O95405 1425 aa5.95□□□□□ -1.46
USP54-216ENST00000498143 KIF1CO43896 1103 aaKnown RBP5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms