RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 GEMIN8Q9NWZ8 242 aaKnown RBP11.06□□□□□ -0.64
SYNE1-230ENST00000495090 MYO1AQ9UBC5 1043 aa11.06□□□□□ -0.64
SYNE1-230ENST00000495090 KCNH3Q9ULD8 1083 aa11.06□□□□□ -0.64
SYNE1-230ENST00000495090 NFE2L3Q9Y4A8 694 aa11.06□□□□□ -0.64
SYNE1-230ENST00000495090 AFDNP55196 1824 aaKnown RBP11.06□□□□□ -0.64
SYNE1-230ENST00000495090 ZMYM6O95789 1325 aa11.06□□□□□ -0.64
SYNE1-230ENST00000495090 A0A0G2JLW4 131 aa11.05□□□□□ -0.64
SYNE1-230ENST00000495090 CPP00450 1065 aa11.05□□□□□ -0.64
SYNE1-230ENST00000495090 ERCC5P28715 1186 aaPredicted RBP11.05□□□□□ -0.64
SYNE1-230ENST00000495090 CASP7P55210 303 aa11.05□□□□□ -0.64
SYNE1-230ENST00000495090 ADKP55263 362 aaKnown RBP11.05□□□□□ -0.64
SYNE1-230ENST00000495090 CORO7P57737 925 aa11.05□□□□□ -0.64
SYNE1-230ENST00000495090 PDE4BQ07343 736 aa11.05□□□□□ -0.64
SYNE1-230ENST00000495090 LONRF3Q496Y0 759 aa11.05□□□□□ -0.64
SYNE1-230ENST00000495090 TTC31Q49AM3 519 aaPredicted RBP11.05□□□□□ -0.64
SYNE1-230ENST00000495090 HSP90B2PQ58FF3 399 aa11.05□□□□□ -0.64
SYNE1-230ENST00000495090 WDR93Q6P2C0 686 aa11.05□□□□□ -0.64
SYNE1-230ENST00000495090 ANKRD13DQ6ZTN6 518 aa11.05□□□□□ -0.64
SYNE1-230ENST00000495090 RASGRP2Q7LDG7 609 aa11.05□□□□□ -0.64
SYNE1-230ENST00000495090 LRP10Q7Z4F1 713 aa11.05□□□□□ -0.64
SYNE1-230ENST00000495090 NCOA7Q8NI08 942 aa11.05□□□□□ -0.64
SYNE1-230ENST00000495090 CCDC51Q96ER9 411 aa11.05□□□□□ -0.64
SYNE1-230ENST00000495090 MAN1B1Q9UKM7 699 aa11.05□□□□□ -0.64
SYNE1-230ENST00000495090 CTAGE9A4FU28 777 aa11.05□□□□□ -0.64
SYNE1-230ENST00000495090 PPFIA3O75145 1194 aa11.05□□□□□ -0.64
SYNE1-230ENST00000495090 CDC27P30260 824 aa11.05□□□□□ -0.64
SYNE1-230ENST00000495090 IL15P40933 162 aaPredicted RBP11.05□□□□□ -0.64
SYNE1-230ENST00000495090 AARSP49588 968 aaKnown RBP eCLIP11.05□□□□□ -0.64
SYNE1-230ENST00000495090 MORC3Q14149 939 aa11.05□□□□□ -0.64
SYNE1-230ENST00000495090 MCM6Q14566 821 aa11.05□□□□□ -0.64
SYNE1-230ENST00000495090 CASP8Q14790 479 aa11.05□□□□□ -0.64
SYNE1-230ENST00000495090 KARSQ15046 597 aaKnown RBP11.05□□□□□ -0.64
SYNE1-230ENST00000495090 COPS6Q7L5N1 327 aa11.05□□□□□ -0.64
SYNE1-230ENST00000495090 PNKPQ96T60 521 aa11.05□□□□□ -0.64
SYNE1-230ENST00000495090 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.05□□□□□ -0.64
SYNE1-230ENST00000495090 TTF2Q9UNY4 1162 aaKnown RBP11.05□□□□□ -0.64
SYNE1-230ENST00000495090 WDR17Q8IZU2 1322 aa11.05□□□□□ -0.64
SYNE1-230ENST00000495090 ABCC12Q96J65 1359 aa11.04□□□□□ -0.64
SYNE1-230ENST00000495090 ARFGEF2Q9Y6D5 1785 aa11.04□□□□□ -0.64
SYNE1-230ENST00000495090 EIF3CLB5ME19 914 aaKnown RBP11.04□□□□□ -0.64
SYNE1-230ENST00000495090 M0R2C6 588 aa11.04□□□□□ -0.64
SYNE1-230ENST00000495090 SEMA3EO15041 775 aa11.04□□□□□ -0.64
SYNE1-230ENST00000495090 GTF2A1P52655 376 aaPredicted RBP11.04□□□□□ -0.64
SYNE1-230ENST00000495090 ANTXR2P58335 489 aa11.04□□□□□ -0.64
SYNE1-230ENST00000495090 POSTNQ15063 836 aa11.04□□□□□ -0.64
SYNE1-230ENST00000495090 KANK3Q6NY19 840 aa11.04□□□□□ -0.64
SYNE1-230ENST00000495090 ZNF790Q6PG37 636 aa11.04□□□□□ -0.64
SYNE1-230ENST00000495090 CPLX2Q6PUV4 134 aaKnown RBP11.04□□□□□ -0.64
SYNE1-230ENST00000495090 ATG9AQ7Z3C6 839 aa11.04□□□□□ -0.64
SYNE1-230ENST00000495090 KRI1Q8N9T8 703 aaKnown RBP11.04□□□□□ -0.64
SYNE1-230ENST00000495090 CTCFLQ8NI51 663 aaPredicted RBP11.04□□□□□ -0.64
SYNE1-230ENST00000495090 EIF3CQ99613 913 aaKnown RBP11.04□□□□□ -0.64
SYNE1-230ENST00000495090 DESI2Q9BSY9 194 aa11.04□□□□□ -0.64
SYNE1-230ENST00000495090 ALG1Q9BT22 464 aa11.04□□□□□ -0.64
SYNE1-230ENST00000495090 FAM107BQ9H098 131 aa11.04□□□□□ -0.64
SYNE1-230ENST00000495090 ABCB6Q9NP58 842 aa11.04□□□□□ -0.64
SYNE1-230ENST00000495090 GPHNQ9NQX3 736 aaPredicted RBP11.04□□□□□ -0.64
SYNE1-230ENST00000495090 FAN1Q9Y2M0 1017 aa11.04□□□□□ -0.64
SYNE1-230ENST00000495090 FOXP2O15409 715 aa11.03□□□□□ -0.64
SYNE1-230ENST00000495090 KDM6AO15550 1401 aaPredicted RBP11.03□□□□□ -0.64
SYNE1-230ENST00000495090 IFIT1P09914 478 aaKnown RBP11.03□□□□□ -0.64
SYNE1-230ENST00000495090 MCM3P25205 808 aa11.03□□□□□ -0.64
SYNE1-230ENST00000495090 PBX1P40424 430 aa11.03□□□□□ -0.64
SYNE1-230ENST00000495090 PLCD1P51178 756 aa11.03□□□□□ -0.64
SYNE1-230ENST00000495090 FAM69CQ0P6D2 419 aa11.03□□□□□ -0.64
SYNE1-230ENST00000495090 TTC39AQ5SRH9 613 aa11.03□□□□□ -0.64
SYNE1-230ENST00000495090 KRT40Q6A162 431 aa11.03□□□□□ -0.64
SYNE1-230ENST00000495090 TTLL5Q6EMB2 1281 aa11.03□□□□□ -0.64
SYNE1-230ENST00000495090 UBE3BQ7Z3V4 1068 aa11.03□□□□□ -0.64
SYNE1-230ENST00000495090 RALYLQ86SE5 291 aaKnown RBP11.03□□□□□ -0.64
SYNE1-230ENST00000495090 EFCAB13Q8IY85 973 aa11.03□□□□□ -0.64
SYNE1-230ENST00000495090 ZNF579Q8NAF0 562 aaKnown RBP11.03□□□□□ -0.64
SYNE1-230ENST00000495090 SPATA20Q8TB22 786 aa11.03□□□□□ -0.64
SYNE1-230ENST00000495090 OSBP2Q969R2 916 aa11.03□□□□□ -0.64
SYNE1-230ENST00000495090 AKAP2Q9Y2D5 859 aa11.03□□□□□ -0.64
SYNE1-230ENST00000495090 ITIH6Q6UXX5 1313 aa11.03□□□□□ -0.64
SYNE1-230ENST00000495090 CTAGE15A4D2H0 777 aa11.03□□□□□ -0.64
SYNE1-230ENST00000495090 PPFIA4O75335 1185 aa11.03□□□□□ -0.64
SYNE1-230ENST00000495090 CIAO1O76071 339 aa11.03□□□□□ -0.64
SYNE1-230ENST00000495090 CTAGE8P0CG41 777 aa11.03□□□□□ -0.64
SYNE1-230ENST00000495090 GUCY2CP25092 1073 aa11.03□□□□□ -0.64
SYNE1-230ENST00000495090 FMR1Q06787 632 aaKnown RBP eCLIP11.03□□□□□ -0.64
SYNE1-230ENST00000495090 LRRC31Q6UY01 552 aa11.03□□□□□ -0.64
SYNE1-230ENST00000495090 RAD9BQ6WBX8 426 aa11.03□□□□□ -0.64
SYNE1-230ENST00000495090 CTAGE6Q86UF2 777 aa11.03□□□□□ -0.64
SYNE1-230ENST00000495090 SUGP1Q8IWZ8 645 aaKnown RBP11.03□□□□□ -0.64
SYNE1-230ENST00000495090 CTAGE4Q8IX94 777 aa11.03□□□□□ -0.64
SYNE1-230ENST00000495090 LRRC59Q96AG4 307 aaKnown RBP11.03□□□□□ -0.64
SYNE1-230ENST00000495090 CTAGE1Q96RT6 745 aa11.03□□□□□ -0.64
SYNE1-230ENST00000495090 GJB4Q9NTQ9 266 aa11.03□□□□□ -0.64
SYNE1-230ENST00000495090 PUF60Q9UHX1 559 aaKnown RBP11.03□□□□□ -0.64
SYNE1-230ENST00000495090 JRKLQ9Y4A0 524 aa11.03□□□□□ -0.64
SYNE1-230ENST00000495090 STK36Q9NRP7 1315 aa11.03□□□□□ -0.64
SYNE1-230ENST00000495090 SCN11AQ9UI33 1791 aa11.02□□□□□ -0.64
SYNE1-230ENST00000495090 SOWAHDA6NJG2 315 aa11.02□□□□□ -0.65
SYNE1-230ENST00000495090 MFAP3LO75121 409 aa11.02□□□□□ -0.65
SYNE1-230ENST00000495090 VSNL1P62760 191 aa11.02□□□□□ -0.65
SYNE1-230ENST00000495090 KIF4BQ2VIQ3 1234 aa11.02□□□□□ -0.65
SYNE1-230ENST00000495090 APTXQ7Z2E3 356 aaKnown RBP11.02□□□□□ -0.65
SYNE1-230ENST00000495090 PPFIBP1Q86W92 1011 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms