RNA–Protein interactions for RNA: ENST00000494503.1

UBR4-216, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-216ENST00000494503 MEIS3Q99687 375 aa11.93□□□□□ -0.5
UBR4-216ENST00000494503 RNF208Q9H0X6 261 aa11.93□□□□□ -0.5
UBR4-216ENST00000494503 FBXO3Q9UK99 471 aa11.93□□□□□ -0.5
UBR4-216ENST00000494503 KCNH4Q9UQ05 1017 aa11.93□□□□□ -0.5
UBR4-216ENST00000494503 COLQQ9Y215 455 aaPredicted RBP11.93□□□□□ -0.5
UBR4-216ENST00000494503 SALL1Q9NSC2 1324 aa11.92□□□□□ -0.5
UBR4-216ENST00000494503 H0YGN5 161 aa11.92□□□□□ -0.5
UBR4-216ENST00000494503 SRGAP3O43295 1099 aa11.92□□□□□ -0.5
UBR4-216ENST00000494503 CCL5P13501 91 aa11.92□□□□□ -0.5
UBR4-216ENST00000494503 CTGFP29279 349 aa11.92□□□□□ -0.5
UBR4-216ENST00000494503 RASGRF1Q13972 1273 aa11.92□□□□□ -0.5
UBR4-216ENST00000494503 NOL9Q5SY16 702 aaKnown RBP11.92□□□□□ -0.5
UBR4-216ENST00000494503 SPTY2D1Q68D10 685 aaPredicted RBP11.92□□□□□ -0.5
UBR4-216ENST00000494503 FASTKD5Q7L8L6 764 aaKnown RBP11.92□□□□□ -0.5
UBR4-216ENST00000494503 ZNF112Q9UJU3 913 aa11.92□□□□□ -0.5
UBR4-216ENST00000494503 A0A1B0GUL7 405 aa11.91□□□□□ -0.5
UBR4-216ENST00000494503 CXCL11O14625 94 aa11.91□□□□□ -0.5
UBR4-216ENST00000494503 TNPO2O14787 897 aaKnown RBP11.91□□□□□ -0.5
UBR4-216ENST00000494503 ENTPD3O75355 529 aa11.91□□□□□ -0.5
UBR4-216ENST00000494503 SLURP2P0DP57 97 aa11.91□□□□□ -0.5
UBR4-216ENST00000494503 TFCP2Q12800 502 aa11.91□□□□□ -0.5
UBR4-216ENST00000494503 MVPQ14764 893 aaKnown RBP11.91□□□□□ -0.5
UBR4-216ENST00000494503 CHRDL2Q6WN34 429 aa11.91□□□□□ -0.5
UBR4-216ENST00000494503 ERICH6Q7L0X2 663 aa11.91□□□□□ -0.5
UBR4-216ENST00000494503 CCDC84Q86UT8 332 aaPredicted RBP11.91□□□□□ -0.5
UBR4-216ENST00000494503 NKX2-3Q8TAU0 364 aa11.91□□□□□ -0.5
UBR4-216ENST00000494503 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.91□□□□□ -0.5
UBR4-216ENST00000494503 AKAP2Q9Y2D5 859 aa11.91□□□□□ -0.5
UBR4-216ENST00000494503 PTPRFP10586 1907 aa11.91□□□□□ -0.5
UBR4-216ENST00000494503 MROH7-TTC4A0A0A0MT08 1334 aa11.9□□□□□ -0.5
UBR4-216ENST00000494503 DDTLA6NHG4 134 aaPredicted RBP11.9□□□□□ -0.5
UBR4-216ENST00000494503 FAM196BA6NMK8 535 aa11.9□□□□□ -0.5
UBR4-216ENST00000494503 PTPRAP18433 802 aa11.9□□□□□ -0.5
UBR4-216ENST00000494503 FRAT1Q92837 279 aaPredicted RBP11.9□□□□□ -0.5
UBR4-216ENST00000494503 XAGE2Q96GT9 111 aa11.9□□□□□ -0.5
UBR4-216ENST00000494503 NOL10Q9BSC4 688 aaKnown RBP11.9□□□□□ -0.5
UBR4-216ENST00000494503 HTATIP2Q9BUP3 242 aa11.9□□□□□ -0.5
UBR4-216ENST00000494503 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.9□□□□□ -0.5
UBR4-216ENST00000494503 RAI14Q9P0K7 980 aa11.9□□□□□ -0.5
UBR4-216ENST00000494503 ATAD5Q96QE3 1844 aa11.9□□□□□ -0.5
UBR4-216ENST00000494503 ADGRA2Q96PE1 1338 aa11.89□□□□□ -0.51
UBR4-216ENST00000494503 A0A0G2JLL6 359 aaPredicted RBP11.89□□□□□ -0.51
UBR4-216ENST00000494503 ADCY3O60266 1144 aa11.89□□□□□ -0.51
UBR4-216ENST00000494503 GNAI3P08754 354 aa11.89□□□□□ -0.51
UBR4-216ENST00000494503 ELNP15502 786 aa11.89□□□□□ -0.51
UBR4-216ENST00000494503 FXR1P51114 621 aaKnown RBP eCLIP11.89□□□□□ -0.514e-7■■■□□ 18
UBR4-216ENST00000494503 MECOMQ03112 1051 aa11.89□□□□□ -0.51
UBR4-216ENST00000494503 MOGSQ13724 837 aa11.89□□□□□ -0.51
UBR4-216ENST00000494503 GPAT2Q6NUI2 795 aa11.89□□□□□ -0.51
UBR4-216ENST00000494503 SH3BP5LQ7L8J4 393 aa11.89□□□□□ -0.51
UBR4-216ENST00000494503 PRRT2Q7Z6L0 340 aaPredicted RBP11.89□□□□□ -0.51
UBR4-216ENST00000494503 ANKRD13CQ8N6S4 541 aa11.89□□□□□ -0.51
UBR4-216ENST00000494503 SLAIN1Q8ND83 568 aa11.89□□□□□ -0.51
UBR4-216ENST00000494503 SHISA4Q96DD7 197 aa11.89□□□□□ -0.51
UBR4-216ENST00000494503 IDI2Q9BXS1 227 aa11.89□□□□□ -0.51
UBR4-216ENST00000494503 COPRSQ9NQ92 184 aa11.89□□□□□ -0.51
UBR4-216ENST00000494503 DDX4Q9NQI0 724 aaKnown RBP11.89□□□□□ -0.51
UBR4-216ENST00000494503 GABRQQ9UN88 632 aa11.89□□□□□ -0.51
UBR4-216ENST00000494503 GAKO14976 1311 aa11.88□□□□□ -0.51
UBR4-216ENST00000494503 PHIPQ8WWQ0 1821 aa11.88□□□□□ -0.51
UBR4-216ENST00000494503 DOCK3Q8IZD9 2030 aa11.88□□□□□ -0.51
UBR4-216ENST00000494503 PHF20L1A8MW92 1017 aa11.88□□□□□ -0.51
UBR4-216ENST00000494503 CTNND1O60716 968 aaKnown RBP11.88□□□□□ -0.51
UBR4-216ENST00000494503 FARP2O94887 1054 aaPredicted RBP11.88□□□□□ -0.51
UBR4-216ENST00000494503 CT47B1P0C2W7 299 aaPredicted RBP11.88□□□□□ -0.51
UBR4-216ENST00000494503 BCRP11274 1271 aa11.88□□□□□ -0.51
UBR4-216ENST00000494503 FLT3LGP49771 235 aa11.88□□□□□ -0.51
UBR4-216ENST00000494503 GSTO1P78417 241 aa11.88□□□□□ -0.51
UBR4-216ENST00000494503 OS9Q13438 667 aaPredicted RBP11.88□□□□□ -0.51
UBR4-216ENST00000494503 PI16Q6UXB8 463 aa11.88□□□□□ -0.51
UBR4-216ENST00000494503 TBC1D9Q6ZT07 1266 aa11.88□□□□□ -0.51
UBR4-216ENST00000494503 COA7Q96BR5 231 aa11.88□□□□□ -0.51
UBR4-216ENST00000494503 TRIM34Q9BYJ4 488 aa11.88□□□□□ -0.51
UBR4-216ENST00000494503 UNC93B1Q9H1C4 597 aa11.88□□□□□ -0.51
UBR4-216ENST00000494503 LRP2BPQ9P2M1 347 aa11.88□□□□□ -0.51
UBR4-216ENST00000494503 PNMA3Q9UL41 463 aa11.88□□□□□ -0.51
UBR4-216ENST00000494503 AFG3L2Q9Y4W6 797 aa11.88□□□□□ -0.51
UBR4-216ENST00000494503 TFRCP02786 760 aaKnown RBP11.87□□□□□ -0.51
UBR4-216ENST00000494503 INHAP05111 366 aa11.87□□□□□ -0.51
UBR4-216ENST00000494503 LDHCP07864 332 aa11.87□□□□□ -0.51
UBR4-216ENST00000494503 GJB1P08034 283 aa11.87□□□□□ -0.51
UBR4-216ENST00000494503 GJA8P48165 433 aa11.87□□□□□ -0.51
UBR4-216ENST00000494503 G3BP1Q13283 466 aaKnown RBP eCLIP11.87□□□□□ -0.518e-6■□□□□ 9
UBR4-216ENST00000494503 TEX11Q8IYF3 940 aa11.87□□□□□ -0.51
UBR4-216ENST00000494503 SPATA5Q8NB90 893 aa11.87□□□□□ -0.51
UBR4-216ENST00000494503 U2AF1L4Q8WU68 220 aaKnown RBP11.87□□□□□ -0.51
UBR4-216ENST00000494503 CLUAP1Q96AJ1 413 aa11.87□□□□□ -0.51
UBR4-216ENST00000494503 ATRNL1Q5VV63 1379 aa11.87□□□□□ -0.51
UBR4-216ENST00000494503 RARSP54136 660 aaKnown RBP11.86□□□□□ -0.51
UBR4-216ENST00000494503 HMGCS2P54868 508 aa11.86□□□□□ -0.51
UBR4-216ENST00000494503 SPP2Q13103 211 aa11.86□□□□□ -0.51
UBR4-216ENST00000494503 TREML2Q5T2D2 321 aa11.86□□□□□ -0.51
UBR4-216ENST00000494503 DEFB118Q96PH6 123 aa11.86□□□□□ -0.51
UBR4-216ENST00000494503 HMG20BQ9P0W2 317 aa11.86□□□□□ -0.51
UBR4-216ENST00000494503 AGTPBP1Q9UPW5 1226 aa11.86□□□□□ -0.51
UBR4-216ENST00000494503 NR2E3Q9Y5X4 410 aa11.86□□□□□ -0.51
UBR4-216ENST00000494503 RFX7Q2KHR2 1363 aa11.86□□□□□ -0.51
UBR4-216ENST00000494503 PDS5AQ29RF7 1337 aaKnown RBP11.86□□□□□ -0.51
UBR4-216ENST00000494503 GPR75-ASB3A0A0A6YYF3 556 aa11.85□□□□□ -0.51
UBR4-216ENST00000494503 IPO8O15397 1037 aaKnown RBP11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms