RNA–Protein interactions for RNA: ENST00000492858.6

GPNMB-214, Transcript of glycoprotein nmb, humanhuman

TSL 5

Gene GPNMB, Length 721 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-214ENST00000492858 SCYL3Q8IZE3 742 aa15.19■□□□□ 0.02
GPNMB-214ENST00000492858 ANKRD13CQ8N6S4 541 aa15.19■□□□□ 0.02
GPNMB-214ENST00000492858 SUCLG2Q96I99 432 aa15.19■□□□□ 0.02
GPNMB-214ENST00000492858 FAM198AQ9UFP1 575 aa15.19■□□□□ 0.02
GPNMB-214ENST00000492858 DAGLAQ9Y4D2 1042 aa15.19■□□□□ 0.02
GPNMB-214ENST00000492858 AFG3L2Q9Y4W6 797 aa15.19■□□□□ 0.02
GPNMB-214ENST00000492858 RPTORQ8N122 1335 aa15.18■□□□□ 0.02
GPNMB-214ENST00000492858 PHF20L1A8MW92 1017 aa15.18■□□□□ 0.02
GPNMB-214ENST00000492858 HMGCRP04035 888 aa15.18■□□□□ 0.02
GPNMB-214ENST00000492858 PTPRAP18433 802 aa15.18■□□□□ 0.02
GPNMB-214ENST00000492858 DIXDC1Q155Q3 683 aa15.18■□□□□ 0.02
GPNMB-214ENST00000492858 ZFPM1Q8IX07 1006 aa15.18■□□□□ 0.02
GPNMB-214ENST00000492858 C11orf49Q9H6J7 331 aa15.18■□□□□ 0.02
GPNMB-214ENST00000492858 PDE8BO95263 885 aa15.17■□□□□ 0.02
GPNMB-214ENST00000492858 ZEB1P37275 1124 aaPredicted RBP15.17■□□□□ 0.02
GPNMB-214ENST00000492858 CCDC27Q2M243 656 aa15.17■□□□□ 0.02
GPNMB-214ENST00000492858 VGLL2Q8N8G2 317 aa15.17■□□□□ 0.02
GPNMB-214ENST00000492858 KAZALD1Q96I82 304 aa15.17■□□□□ 0.02
GPNMB-214ENST00000492858 HMX1Q9NP08 348 aaPredicted RBP15.17■□□□□ 0.02
GPNMB-214ENST00000492858 IL16Q14005 1332 aa15.17■□□□□ 0.02
GPNMB-214ENST00000492858 FANCIQ9NVI1 1328 aa15.17■□□□□ 0.02
GPNMB-214ENST00000492858 ATRNL1Q5VV63 1379 aa15.16■□□□□ 0.02
GPNMB-214ENST00000492858 TRIM75PA6NK02 468 aa15.16■□□□□ 0.02
GPNMB-214ENST00000492858 VAMP4O75379 141 aa15.16■□□□□ 0.02
GPNMB-214ENST00000492858 TRIM32Q13049 653 aa15.16■□□□□ 0.02
GPNMB-214ENST00000492858 FAM110CQ1W6H9 321 aa15.16■□□□□ 0.02
GPNMB-214ENST00000492858 SLC4A10Q6U841 1118 aa15.16■□□□□ 0.02
GPNMB-214ENST00000492858 WDR66Q8TBY9 1149 aa15.16■□□□□ 0.02
GPNMB-214ENST00000492858 PRKRIP1Q9H875 184 aaPredicted RBP15.16■□□□□ 0.02
GPNMB-214ENST00000492858 USP40Q9NVE5 1235 aa15.16■□□□□ 0.02
GPNMB-214ENST00000492858 ALDH1L1O75891 902 aa15.15■□□□□ 0.02
GPNMB-214ENST00000492858 IFIT1P09914 478 aaKnown RBP15.15■□□□□ 0.02
GPNMB-214ENST00000492858 FAM161BQ96MY7 647 aa15.15■□□□□ 0.02
GPNMB-214ENST00000492858 GUCD1Q96NT3 240 aa15.15■□□□□ 0.02
GPNMB-214ENST00000492858 SRCIN1Q9C0H9 1055 aa15.15■□□□□ 0.02
GPNMB-214ENST00000492858 BICC1Q9H694 974 aaKnown RBP15.15■□□□□ 0.02
GPNMB-214ENST00000492858 SPINK5Q9NQ38 1064 aaPredicted RBP15.15■□□□□ 0.02
GPNMB-214ENST00000492858 OGDHLQ9ULD0 1010 aa15.15■□□□□ 0.02
GPNMB-214ENST00000492858 AGTPBP1Q9UPW5 1226 aa15.15■□□□□ 0.02
GPNMB-214ENST00000492858 LRRFIP2Q9Y608 721 aaKnown RBP15.15■□□□□ 0.02
GPNMB-214ENST00000492858 PFASO15067 1338 aa15.15■□□□□ 0.02
GPNMB-214ENST00000492858 AK9Q5TCS8 1911 aa15.14■□□□□ 0.01
GPNMB-214ENST00000492858 PRDX5P30044 214 aa15.14■□□□□ 0.01
GPNMB-214ENST00000492858 MDM2Q00987 491 aaPredicted RBP15.14■□□□□ 0.01
GPNMB-214ENST00000492858 PUM3Q15397 648 aaKnown RBP15.14■□□□□ 0.01
GPNMB-214ENST00000492858 TREML2Q5T2D2 321 aa15.14■□□□□ 0.01
GPNMB-214ENST00000492858 CCDC84Q86UT8 332 aaPredicted RBP15.14■□□□□ 0.01
GPNMB-214ENST00000492858 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.14■□□□□ 0.01
GPNMB-214ENST00000492858 PNMA3Q9UL41 463 aa15.14■□□□□ 0.01
GPNMB-214ENST00000492858 MUC3AQ02505 3323 aa15.14■□□□□ 0.01
GPNMB-214ENST00000492858 KIF16BQ96L93 1317 aa15.14■□□□□ 0.01
GPNMB-214ENST00000492858 POTEB2H3BUK9 544 aa15.13■□□□□ 0.01
GPNMB-214ENST00000492858 NBPF7P0C2Y1 421 aaPredicted RBP15.13■□□□□ 0.01
GPNMB-214ENST00000492858 SLURP2P0DP57 97 aa15.13■□□□□ 0.01
GPNMB-214ENST00000492858 FGFR2P21802 821 aa15.13■□□□□ 0.01
GPNMB-214ENST00000492858 RGS3P49796 1198 aa15.13■□□□□ 0.01
GPNMB-214ENST00000492858 EXOSC9Q06265 439 aaKnown RBP15.13■□□□□ 0.01
GPNMB-214ENST00000492858 DDX60LQ5H9U9 1706 aaKnown RBP15.13■□□□□ 0.01
GPNMB-214ENST00000492858 FAM109BQ6ICB4 259 aaPredicted RBP15.13■□□□□ 0.01
GPNMB-214ENST00000492858 ZSCAN29Q8IWY8 852 aaPredicted RBP15.13■□□□□ 0.01
GPNMB-214ENST00000492858 KLHDC4Q8TBB5 520 aa15.13■□□□□ 0.01
GPNMB-214ENST00000492858 CDH23Q9H251 3354 aa15.13■□□□□ 0.01
GPNMB-214ENST00000492858 GJD2Q9UKL4 321 aa15.13■□□□□ 0.01
GPNMB-214ENST00000492858 LDHBP07195 334 aaKnown RBP15.12■□□□□ 0.01
GPNMB-214ENST00000492858 CACNA1FO60840 1977 aa15.11■□□□□ 0.01
GPNMB-214ENST00000492858 DOCK3Q8IZD9 2030 aa15.11■□□□□ 0.01
GPNMB-214ENST00000492858 CTNND1O60716 968 aaKnown RBP15.11■□□□□ 0.01
GPNMB-214ENST00000492858 ENTPD3O75355 529 aa15.11■□□□□ 0.01
GPNMB-214ENST00000492858 SLC5A1P13866 664 aa15.11■□□□□ 0.01
GPNMB-214ENST00000492858 GCLCP48506 637 aaPredicted RBP15.11■□□□□ 0.01
GPNMB-214ENST00000492858 RABL6Q3YEC7 729 aaPredicted RBP15.11■□□□□ 0.01
GPNMB-214ENST00000492858 SH3BP5LQ7L8J4 393 aa15.11■□□□□ 0.01
GPNMB-214ENST00000492858 ANKRD44Q8N8A2 993 aa15.11■□□□□ 0.01
GPNMB-214ENST00000492858 TRIB2Q92519 343 aa15.11■□□□□ 0.01
GPNMB-214ENST00000492858 PRDM6Q9NQX0 595 aa15.11■□□□□ 0.01
GPNMB-214ENST00000492858 PRKAR2AP13861 404 aaKnown RBP15.1■□□□□ 0.01
GPNMB-214ENST00000492858 MAP3K10Q02779 954 aa15.1■□□□□ 0.01
GPNMB-214ENST00000492858 LRRC26Q2I0M4 334 aa15.1■□□□□ 0.01
GPNMB-214ENST00000492858 PROCA1Q8NCQ7 364 aaPredicted RBP15.1■□□□□ 0.01
GPNMB-214ENST00000492858 IDI2Q9BXS1 227 aa15.1■□□□□ 0.01
GPNMB-214ENST00000492858 UTYO14607 1347 aa15.1■□□□□ 0.01
GPNMB-214ENST00000492858 DOCK2Q92608 1830 aa15.09■□□□□ 0.01
GPNMB-214ENST00000492858 DDTLA6NHG4 134 aaPredicted RBP15.09■□□□□ 0.01
GPNMB-214ENST00000492858 COL6A1P12109 1028 aa15.09■□□□□ 0.01
GPNMB-214ENST00000492858 CYP2B6P20813 491 aa15.09■□□□□ 0.01
GPNMB-214ENST00000492858 MAP3K21Q5TCX8 1036 aa15.09■□□□□ 0.01
GPNMB-214ENST00000492858 ZNF697Q5TEC3 545 aa15.09■□□□□ 0.01
GPNMB-214ENST00000492858 LPIN2Q92539 896 aa15.09■□□□□ 0.01
GPNMB-214ENST00000492858 PTPRFP10586 1907 aa15.09■□□□□ 0.01
GPNMB-214ENST00000492858 COL2A1P02458 1487 aaPredicted RBP15.08■□□□□ 0.01
GPNMB-214ENST00000492858 SPP2Q13103 211 aa15.08■□□□□ 0
GPNMB-214ENST00000492858 PABPC4Q13310 644 aaKnown RBP eCLIP15.08■□□□□ 0
GPNMB-214ENST00000492858 ASCC2Q9H1I8 757 aaPredicted RBP15.08■□□□□ 0
GPNMB-214ENST00000492858 RFX7Q2KHR2 1363 aa15.08■□□□□ 0
GPNMB-214ENST00000492858 HMGCS2P54868 508 aa15.07■□□□□ 0
GPNMB-214ENST00000492858 PICALMQ13492 652 aa15.07■□□□□ 0
GPNMB-214ENST00000492858 MAFAQ8NHW3 353 aaPredicted RBP15.07■□□□□ 0
GPNMB-214ENST00000492858 LBHD1Q9BQE6 289 aaPredicted RBP15.07■□□□□ 0
GPNMB-214ENST00000492858 DDX4Q9NQI0 724 aaKnown RBP15.07■□□□□ 0
GPNMB-214ENST00000492858 DOCK1Q14185 1865 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms