RNA–Protein interactions for RNA: ENST00000490690.1

SHROOM3-209, Transcript of shroom family member 3, humanhuman

TSL 4

Gene SHROOM3, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-209ENST00000490690 MYO5AQ9Y4I1 1855 aaKnown RBP23.77■■□□□ 1.4
SHROOM3-209ENST00000490690 NFIAQ12857 509 aa23.77■■□□□ 1.4
SHROOM3-209ENST00000490690 TTC6Q86TZ1 520 aa23.77■■□□□ 1.4
SHROOM3-209ENST00000490690 SKAP1Q86WV1 359 aa23.77■■□□□ 1.4
SHROOM3-209ENST00000490690 ZSCAN29Q8IWY8 852 aaPredicted RBP23.77■■□□□ 1.4
SHROOM3-209ENST00000490690 GLIS2Q9BZE0 524 aaPredicted RBP23.77■■□□□ 1.4
SHROOM3-209ENST00000490690 FAM198AQ9UFP1 575 aa23.77■■□□□ 1.4
SHROOM3-209ENST00000490690 ATRNL1Q5VV63 1379 aa23.77■■□□□ 1.4
SHROOM3-209ENST00000490690 AK9Q5TCS8 1911 aa23.76■■□□□ 1.39
SHROOM3-209ENST00000490690 A0A0D9SFI3 127 aa23.76■■□□□ 1.39
SHROOM3-209ENST00000490690 PATL2C9JE40 543 aaKnown RBP23.76■■□□□ 1.39
SHROOM3-209ENST00000490690 M0R2C6 588 aa23.76■■□□□ 1.39
SHROOM3-209ENST00000490690 CACNB3P54284 484 aa23.76■■□□□ 1.39
SHROOM3-209ENST00000490690 FKBP1BP68106 108 aa23.76■■□□□ 1.39
SHROOM3-209ENST00000490690 DCAF15Q66K64 600 aa23.76■■□□□ 1.39
SHROOM3-209ENST00000490690 FAM227BQ96M60 508 aa23.76■■□□□ 1.39
SHROOM3-209ENST00000490690 APPP05067 770 aa23.75■■□□□ 1.39
SHROOM3-209ENST00000490690 TCP10Q12799 353 aa23.75■■□□□ 1.39
SHROOM3-209ENST00000490690 MAPKAPK5Q8IW41 473 aa23.75■■□□□ 1.39
SHROOM3-209ENST00000490690 ARPP21Q9UBL0 812 aaPredicted RBP23.75■■□□□ 1.39
SHROOM3-209ENST00000490690 ADM5C9JUS6 153 aa23.74■■□□□ 1.39
SHROOM3-209ENST00000490690 PPP1R12BO60237 982 aaPredicted RBP23.74■■□□□ 1.39
SHROOM3-209ENST00000490690 ITGBL1O95965 494 aaPredicted RBP23.74■■□□□ 1.39
SHROOM3-209ENST00000490690 KIAA1211Q6ZU35 1233 aa23.74■■□□□ 1.39
SHROOM3-209ENST00000490690 CDCA5Q96FF9 252 aa23.74■■□□□ 1.39
SHROOM3-209ENST00000490690 CSRNP1Q96S65 589 aa23.74■■□□□ 1.39
SHROOM3-209ENST00000490690 DCP1AQ9NPI6 582 aaPredicted RBP23.74■■□□□ 1.39
SHROOM3-209ENST00000490690 PI4KBQ9UBF8 816 aa23.74■■□□□ 1.39
SHROOM3-209ENST00000490690 CNTNAP1P78357 1384 aa23.74■■□□□ 1.39
SHROOM3-209ENST00000490690 SLFNL1Q499Z3 407 aa23.73■■□□□ 1.39
SHROOM3-209ENST00000490690 SEC62Q99442 399 aaKnown RBP23.73■■□□□ 1.39
SHROOM3-209ENST00000490690 TRIM34Q9BYJ4 488 aa23.73■■□□□ 1.39
SHROOM3-209ENST00000490690 TMEM39BQ9GZU3 492 aa23.73■■□□□ 1.39
SHROOM3-209ENST00000490690 DDX4Q9NQI0 724 aaKnown RBP23.73■■□□□ 1.39
SHROOM3-209ENST00000490690 MCM9Q9NXL9 1143 aa23.73■■□□□ 1.39
SHROOM3-209ENST00000490690 ZMYM6O95789 1325 aa23.73■■□□□ 1.39
SHROOM3-209ENST00000490690 UNCXA6NJT0 531 aa23.72■■□□□ 1.39
SHROOM3-209ENST00000490690 SGSM2O43147 1006 aa23.72■■□□□ 1.39
SHROOM3-209ENST00000490690 CHGBP05060 677 aa23.72■■□□□ 1.39
SHROOM3-209ENST00000490690 POLR3DP05423 398 aaPredicted RBP23.72■■□□□ 1.39
SHROOM3-209ENST00000490690 TDO2P48775 406 aa23.72■■□□□ 1.39
SHROOM3-209ENST00000490690 FOXP4Q8IVH2 680 aaPredicted RBP23.72■■□□□ 1.39
SHROOM3-209ENST00000490690 SDR42E1Q8WUS8 393 aa23.72■■□□□ 1.39
SHROOM3-209ENST00000490690 NAPBQ9H115 298 aa23.72■■□□□ 1.39
SHROOM3-209ENST00000490690 HERC5Q9UII4 1024 aaKnown RBP23.72■■□□□ 1.39
SHROOM3-209ENST00000490690 PASKQ96RG2 1323 aa23.72■■□□□ 1.39
SHROOM3-209ENST00000490690 DSCC1Q9BVC3 393 aa23.71■■□□□ 1.39
SHROOM3-209ENST00000490690 EHD4Q9H223 541 aa23.71■■□□□ 1.39
SHROOM3-209ENST00000490690 ZNF287Q9HBT7 754 aa23.71■■□□□ 1.39
SHROOM3-209ENST00000490690 MKRN1Q9UHC7 482 aaKnown RBP23.71■■□□□ 1.39
SHROOM3-209ENST00000490690 CTNNA3Q9UI47 895 aa23.71■■□□□ 1.39
SHROOM3-209ENST00000490690 GSG1L2A8MUP6 293 aa23.7■■□□□ 1.38
SHROOM3-209ENST00000490690 TBC1D12O60347 775 aa23.7■■□□□ 1.38
SHROOM3-209ENST00000490690 SLC3A2P08195 630 aaKnown RBP23.7■■□□□ 1.38
SHROOM3-209ENST00000490690 ALX1Q15699 326 aa23.7■■□□□ 1.38
SHROOM3-209ENST00000490690 SBK1Q52WX2 424 aa23.7■■□□□ 1.38
SHROOM3-209ENST00000490690 ARMC9Q7Z3E5 817 aa23.7■■□□□ 1.38
SHROOM3-209ENST00000490690 IFNL3Q8IZI9 196 aa23.7■■□□□ 1.38
SHROOM3-209ENST00000490690 C2orf69Q8N8R5 385 aa23.7■■□□□ 1.38
SHROOM3-209ENST00000490690 TEPSINQ96N21 525 aa23.7■■□□□ 1.38
SHROOM3-209ENST00000490690 CELF2O95319 508 aaKnown RBP23.69■■□□□ 1.38
SHROOM3-209ENST00000490690 HSPD1P10809 573 aaKnown RBP23.69■■□□□ 1.38
SHROOM3-209ENST00000490690 CRACR2BQ8N4Y2 399 aaPredicted RBP23.69■■□□□ 1.38
SHROOM3-209ENST00000490690 ESYT1Q9BSJ8 1104 aa23.69■■□□□ 1.38
SHROOM3-209ENST00000490690 PRKAB2O43741 272 aa23.68■■□□□ 1.38
SHROOM3-209ENST00000490690 IREB2P48200 963 aaKnown RBP23.68■■□□□ 1.38
SHROOM3-209ENST00000490690 CCDC129Q6ZRS4 1044 aa23.68■■□□□ 1.38
SHROOM3-209ENST00000490690 ZNF589Q86UQ0 364 aaPredicted RBP23.68■■□□□ 1.38
SHROOM3-209ENST00000490690 ZNF341Q9BYN7 854 aa23.68■■□□□ 1.38
SHROOM3-209ENST00000490690 SWAP70Q9UH65 585 aa23.68■■□□□ 1.38
SHROOM3-209ENST00000490690 SERPINB13Q9UIV8 391 aa23.68■■□□□ 1.38
SHROOM3-209ENST00000490690 EPB41L2O43491 1005 aaKnown RBP23.67■■□□□ 1.38
SHROOM3-209ENST00000490690 REC8O95072 547 aa23.67■■□□□ 1.38
SHROOM3-209ENST00000490690 NT5C2P49902 561 aa23.67■■□□□ 1.38
SHROOM3-209ENST00000490690 NBPF12Q5TAG4 269 aaPredicted RBP23.67■■□□□ 1.38
SHROOM3-209ENST00000490690 GBA2Q9HCG7 927 aaPredicted RBP23.67■■□□□ 1.38
SHROOM3-209ENST00000490690 PALD1Q9ULE6 856 aa23.67■■□□□ 1.38
SHROOM3-209ENST00000490690 DDTLA6NHG4 134 aaPredicted RBP23.66■■□□□ 1.38
SHROOM3-209ENST00000490690 TRAF5O00463 557 aa23.66■■□□□ 1.38
SHROOM3-209ENST00000490690 MAP3K10Q02779 954 aa23.66■■□□□ 1.38
SHROOM3-209ENST00000490690 TTLL12Q14166 644 aaPredicted RBP23.66■■□□□ 1.38
SHROOM3-209ENST00000490690 ZNF408Q9H9D4 720 aa23.66■■□□□ 1.38
SHROOM3-209ENST00000490690 SAP30BPQ9UHR5 308 aaKnown RBP23.66■■□□□ 1.38
SHROOM3-209ENST00000490690 TMEM88BA6NKF7 163 aa23.65■■□□□ 1.38
SHROOM3-209ENST00000490690 USP17L12C9JPN9 530 aa23.65■■□□□ 1.38
SHROOM3-209ENST00000490690 USP17L21D6R901 530 aa23.65■■□□□ 1.38
SHROOM3-209ENST00000490690 PCP11498 1178 aaKnown RBP23.65■■□□□ 1.38
SHROOM3-209ENST00000490690 MAP3K11Q16584 847 aa23.65■■□□□ 1.38
SHROOM3-209ENST00000490690 C12orf60Q5U649 245 aa23.65■■□□□ 1.38
SHROOM3-209ENST00000490690 METTL16Q86W50 562 aaKnown RBP23.65■■□□□ 1.38
SHROOM3-209ENST00000490690 ZFPM1Q8IX07 1006 aa23.65■■□□□ 1.38
SHROOM3-209ENST00000490690 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.65■■□□□ 1.38
SHROOM3-209ENST00000490690 GINM1Q9NU53 330 aa23.65■■□□□ 1.38
SHROOM3-209ENST00000490690 SCAF8Q9UPN6 1271 aaKnown RBP23.65■■□□□ 1.38
SHROOM3-209ENST00000490690 U3KPZ7 1027 aaPredicted RBP23.65■■□□□ 1.38
SHROOM3-209ENST00000490690 FOCADQ5VW36 1801 aa23.65■■□□□ 1.38
SHROOM3-209ENST00000490690 APLP1P51693 650 aa23.64■■□□□ 1.37
SHROOM3-209ENST00000490690 CTR9Q6PD62 1173 aa23.64■■□□□ 1.37
SHROOM3-209ENST00000490690 SH3BP5LQ7L8J4 393 aa23.64■■□□□ 1.37
SHROOM3-209ENST00000490690 EPB41L4AQ9HCS5 686 aaPredicted RBP23.64■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms