RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, human

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATG4A-208	ENST00000489247		M0R2N6	131 aa		6.88	□□□□□ -1.31
ATG4A-208	ENST00000489247	C21orf2	O43822	256 aa		6.88	□□□□□ -1.31
ATG4A-208	ENST00000489247	EIF5B	O60841	1220 aa	Known RBP	6.88	□□□□□ -1.31
ATG4A-208	ENST00000489247	BRD1	O95696	1058 aa		6.88	□□□□□ -1.31
ATG4A-208	ENST00000489247	PROC	P04070	461 aa		6.88	□□□□□ -1.31
ATG4A-208	ENST00000489247	ATP8B2	P98198	1209 aa		6.88	□□□□□ -1.31
ATG4A-208	ENST00000489247	MTX1	Q13505	466 aa		6.88	□□□□□ -1.31
ATG4A-208	ENST00000489247	WDR44	Q5JSH3	913 aa		6.88	□□□□□ -1.31
ATG4A-208	ENST00000489247	BEND3	Q5T5X7	828 aa		6.88	□□□□□ -1.31
ATG4A-208	ENST00000489247	RIPOR1	Q6ZS17	1223 aa		6.88	□□□□□ -1.31
ATG4A-208	ENST00000489247	LRP10	Q7Z4F1	713 aa		6.88	□□□□□ -1.31
ATG4A-208	ENST00000489247	VWA5B2	Q8N398	1253 aa		6.88	□□□□□ -1.31
ATG4A-208	ENST00000489247	ZCRB1	Q8TBF4	217 aa	Known RBP	6.88	□□□□□ -1.31
ATG4A-208	ENST00000489247	WHAMM	Q8TF30	809 aa		6.88	□□□□□ -1.31
ATG4A-208	ENST00000489247	DNAAF4	Q8WXU2	420 aa		6.88	□□□□□ -1.31
ATG4A-208	ENST00000489247	NIFK	Q9BYG3	293 aa	Known RBP	6.88	□□□□□ -1.31
ATG4A-208	ENST00000489247	USP44	Q9H0E7	712 aa		6.88	□□□□□ -1.31
ATG4A-208	ENST00000489247	CHPF2	Q9P2E5	772 aa		6.88	□□□□□ -1.31
ATG4A-208	ENST00000489247	RGPD5	Q99666	1765 aa		6.87	□□□□□ -1.31
ATG4A-208	ENST00000489247	SCN11A	Q9UI33	1791 aa		6.87	□□□□□ -1.31
ATG4A-208	ENST00000489247	SALL3	Q9BXA9	1300 aa		6.87	□□□□□ -1.31
ATG4A-208	ENST00000489247	ITGB2	P05107	769 aa		6.87	□□□□□ -1.31
ATG4A-208	ENST00000489247	THBS1	P07996	1170 aa		6.87	□□□□□ -1.31
ATG4A-208	ENST00000489247	IL2RB	P14784	551 aa		6.87	□□□□□ -1.31
ATG4A-208	ENST00000489247	MSX1	P28360	303 aa		6.87	□□□□□ -1.31
ATG4A-208	ENST00000489247	TXLNA	P40222	546 aa		6.87	□□□□□ -1.31
ATG4A-208	ENST00000489247	DBN1	Q16643	649 aa		6.87	□□□□□ -1.31
ATG4A-208	ENST00000489247	KSR2	Q6VAB6	950 aa		6.87	□□□□□ -1.31
ATG4A-208	ENST00000489247	SSH3	Q8TE77	659 aa		6.87	□□□□□ -1.31
ATG4A-208	ENST00000489247	AIDA	Q96BJ3	306 aa		6.87	□□□□□ -1.31
ATG4A-208	ENST00000489247	TBC1D32	Q96NH3	1257 aa		6.87	□□□□□ -1.31
ATG4A-208	ENST00000489247	HINFP	Q9BQA5	517 aa		6.87	□□□□□ -1.31
ATG4A-208	ENST00000489247	SRCIN1	Q9C0H9	1055 aa		6.87	□□□□□ -1.31
ATG4A-208	ENST00000489247	PHAX	Q9H814	394 aa	Known RBP	6.87	□□□□□ -1.31
ATG4A-208	ENST00000489247	NOP58	Q9Y2X3	529 aa	Known RBP	6.87	□□□□□ -1.31
ATG4A-208	ENST00000489247	COL14A1	Q05707	1796 aa	Known RBP	6.87	□□□□□ -1.31
ATG4A-208	ENST00000489247	VIRMA	Q69YN4	1812 aa	Known RBP	6.86	□□□□□ -1.31
ATG4A-208	ENST00000489247	F11	P03951	625 aa		6.86	□□□□□ -1.31
ATG4A-208	ENST00000489247	SNRPA1	P09661	255 aa	Known RBP	6.86	□□□□□ -1.31
ATG4A-208	ENST00000489247	ANKRD45	Q5TZF3	282 aa		6.86	□□□□□ -1.31
ATG4A-208	ENST00000489247	TOM1L2	Q6ZVM7	507 aa		6.86	□□□□□ -1.31
ATG4A-208	ENST00000489247	SCG3	Q8WXD2	468 aa	Known RBP	6.86	□□□□□ -1.31
ATG4A-208	ENST00000489247	KLRG1	Q96E93	195 aa		6.86	□□□□□ -1.31
ATG4A-208	ENST00000489247	FMNL2	Q96PY5	1086 aa		6.86	□□□□□ -1.31
ATG4A-208	ENST00000489247	COL25A1	Q9BXS0	654 aa	Predicted RBP	6.86	□□□□□ -1.31
ATG4A-208	ENST00000489247	LNPK	Q9C0E8	428 aa		6.86	□□□□□ -1.31
ATG4A-208	ENST00000489247	GZF1	Q9H116	711 aa	Predicted RBP	6.86	□□□□□ -1.31
ATG4A-208	ENST00000489247	RUBCNL	Q9H714	662 aa		6.86	□□□□□ -1.31
ATG4A-208	ENST00000489247	HDAC5	Q9UQL6	1122 aa		6.86	□□□□□ -1.31
ATG4A-208	ENST00000489247	ROBO1	Q9Y6N7	1651 aa		6.86	□□□□□ -1.31
ATG4A-208	ENST00000489247	LRP6	O75581	1613 aa		6.86	□□□□□ -1.31
ATG4A-208	ENST00000489247	PAPPA	Q13219	1627 aa		6.86	□□□□□ -1.31
ATG4A-208	ENST00000489247	KCP	Q6ZWJ8	1503 aa		6.86	□□□□□ -1.31
ATG4A-208	ENST00000489247	AOX1	Q06278	1338 aa		6.85	□□□□□ -1.31
ATG4A-208	ENST00000489247	PLCH1	Q4KWH8	1693 aa		6.85	□□□□□ -1.31
ATG4A-208	ENST00000489247		A0A1B0GTH6	734 aa		6.85	□□□□□ -1.31
ATG4A-208	ENST00000489247	PI4KAP2	A4QPH2	592 aa		6.85	□□□□□ -1.31
ATG4A-208	ENST00000489247	DDX58	O95786	925 aa	Known RBP	6.85	□□□□□ -1.31
ATG4A-208	ENST00000489247	UBTFL1	P0CB47	393 aa	Predicted RBP	6.85	□□□□□ -1.31
ATG4A-208	ENST00000489247	EIF2S2	P20042	333 aa	Known RBP	6.85	□□□□□ -1.31
ATG4A-208	ENST00000489247	ATP4A	P20648	1035 aa		6.85	□□□□□ -1.31
ATG4A-208	ENST00000489247	NOS2	P35228	1153 aa		6.85	□□□□□ -1.31
ATG4A-208	ENST00000489247	CABP4	P57796	275 aa		6.85	□□□□□ -1.31
ATG4A-208	ENST00000489247	KCNA1	Q09470	495 aa		6.85	□□□□□ -1.31
ATG4A-208	ENST00000489247	TEAD4	Q15561	434 aa		6.85	□□□□□ -1.31
ATG4A-208	ENST00000489247	SLC4A10	Q6U841	1118 aa		6.85	□□□□□ -1.31
ATG4A-208	ENST00000489247	PI4KAP1	Q8N8J0	262 aa		6.85	□□□□□ -1.31
ATG4A-208	ENST00000489247	LINS1	Q8NG48	757 aa		6.85	□□□□□ -1.31
ATG4A-208	ENST00000489247	NANOS1	Q8WY41	292 aa	Known RBP	6.85	□□□□□ -1.31
ATG4A-208	ENST00000489247	ZNF837	Q96EG3	531 aa	Predicted RBP	6.85	□□□□□ -1.31
ATG4A-208	ENST00000489247	ZNF496	Q96IT1	587 aa	Predicted RBP	6.85	□□□□□ -1.31
ATG4A-208	ENST00000489247	COL16A1	Q07092	1604 aa	Predicted RBP	6.85	□□□□□ -1.31
ATG4A-208	ENST00000489247	GPR25	O00155	361 aa		6.84	□□□□□ -1.31
ATG4A-208	ENST00000489247	EML1	O00423	815 aa		6.84	□□□□□ -1.31
ATG4A-208	ENST00000489247	PPP1R12B	O60237	982 aa	Predicted RBP	6.84	□□□□□ -1.31
ATG4A-208	ENST00000489247	RAB11FIP3	O75154	756 aa		6.84	□□□□□ -1.31
ATG4A-208	ENST00000489247	RBM25	P49756	843 aa	Known RBP	6.84	□□□□□ -1.31
ATG4A-208	ENST00000489247	PROSER3	Q2NL68	480 aa		6.84	□□□□□ -1.31
ATG4A-208	ENST00000489247	TTC22	Q5TAA0	569 aa		6.84	□□□□□ -1.31
ATG4A-208	ENST00000489247	PHLDB3	Q6NSJ2	640 aa		6.84	□□□□□ -1.31
ATG4A-208	ENST00000489247	TRIM22	Q8IYM9	498 aa		6.84	□□□□□ -1.31
ATG4A-208	ENST00000489247	TTC5	Q8N0Z6	440 aa		6.84	□□□□□ -1.31
ATG4A-208	ENST00000489247	CLP1	Q92989	425 aa	Known RBP	6.84	□□□□□ -1.31
ATG4A-208	ENST00000489247	ANP32E	Q9BTT0	268 aa		6.84	□□□□□ -1.31
ATG4A-208	ENST00000489247	UPF2	Q9HAU5	1272 aa	Known RBP	6.84	□□□□□ -1.31
ATG4A-208	ENST00000489247	STAP2	Q9UGK3	403 aa		6.84	□□□□□ -1.31
ATG4A-208	ENST00000489247	ZNF232	Q9UNY5	417 aa		6.84	□□□□□ -1.31
ATG4A-208	ENST00000489247	SHANK3	Q9BYB0	1731 aa		6.84	□□□□□ -1.31
ATG4A-208	ENST00000489247	USP42	Q9H9J4	1324 aa	Known RBP	6.83	□□□□□ -1.32
ATG4A-208	ENST00000489247	UBR2	Q8IWV8	1755 aa		6.83	□□□□□ -1.32
ATG4A-208	ENST00000489247	PNMA6E	A0A0J9YXQ4	647 aa		6.83	□□□□□ -1.32
ATG4A-208	ENST00000489247	SERTM1	A2A2V5	107 aa		6.83	□□□□□ -1.32
ATG4A-208	ENST00000489247	PRAMEF22	A3QJZ6	481 aa		6.83	□□□□□ -1.32
ATG4A-208	ENST00000489247	PRMT3	O60678	531 aa		6.83	□□□□□ -1.32
ATG4A-208	ENST00000489247	SLURP2	P0DP57	97 aa		6.83	□□□□□ -1.32
ATG4A-208	ENST00000489247	GSPT1	P15170	499 aa	Known RBP	6.83	□□□□□ -1.32
ATG4A-208	ENST00000489247	SSFA2	P28290	1259 aa		6.83	□□□□□ -1.32
ATG4A-208	ENST00000489247	PSMA6	P60900	246 aa	Known RBP	6.83	□□□□□ -1.32
ATG4A-208	ENST00000489247	SV2A	Q7L0J3	742 aa		6.83	□□□□□ -1.32
ATG4A-208	ENST00000489247	GTPBP3	Q969Y2	492 aa	Known RBP	6.83	□□□□□ -1.32

Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms