RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 USPL1Q5W0Q7 1092 aa7.34□□□□□ -1.23
SMC4-220ENST00000488017 PRPF40BQ6NWY9 871 aaKnown RBP7.34□□□□□ -1.23
SMC4-220ENST00000488017 ARHGAP27Q6ZUM4 889 aa7.34□□□□□ -1.23
SMC4-220ENST00000488017 ANKLE2Q86XL3 938 aa7.34□□□□□ -1.23
SMC4-220ENST00000488017 DISC1Q9NRI5 854 aa7.34□□□□□ -1.23
SMC4-220ENST00000488017 PCOLCE2Q9UKZ9 415 aa7.34□□□□□ -1.23
SMC4-220ENST00000488017 ABL1P00519 1130 aa7.33□□□□□ -1.24
SMC4-220ENST00000488017 ECM1Q16610 540 aa7.33□□□□□ -1.24
SMC4-220ENST00000488017 WDR89Q96FK6 387 aaPredicted RBP7.33□□□□□ -1.24
SMC4-220ENST00000488017 DUSP23Q9BVJ7 150 aa7.33□□□□□ -1.24
SMC4-220ENST00000488017 ABCB6Q9NP58 842 aa7.33□□□□□ -1.24
SMC4-220ENST00000488017 PCDHGC5Q9Y5F6 944 aa7.33□□□□□ -1.24
SMC4-220ENST00000488017 SNX11Q9Y5W9 270 aa7.33□□□□□ -1.24
SMC4-220ENST00000488017 U3KQE9 123 aa7.33□□□□□ -1.24
SMC4-220ENST00000488017 ZNF503-AS2A6NEH8 195 aa7.32□□□□□ -1.24
SMC4-220ENST00000488017 ZNF862O60290 1169 aa7.32□□□□□ -1.24
SMC4-220ENST00000488017 CPNE3O75131 537 aaKnown RBP7.32□□□□□ -1.24
SMC4-220ENST00000488017 CD96P40200 585 aa7.32□□□□□ -1.24
SMC4-220ENST00000488017 MLANAQ16655 118 aa7.32□□□□□ -1.24
SMC4-220ENST00000488017 PHLDB3Q6NSJ2 640 aa7.32□□□□□ -1.24
SMC4-220ENST00000488017 TNKS2Q9H2K2 1166 aa7.32□□□□□ -1.24
SMC4-220ENST00000488017 EGFL7Q9UHF1 273 aa7.32□□□□□ -1.24
SMC4-220ENST00000488017 BRPF3Q9ULD4 1205 aa7.32□□□□□ -1.24
SMC4-220ENST00000488017 PLAGL2Q9UPG8 496 aa7.32□□□□□ -1.24
SMC4-220ENST00000488017 LEFTY1O75610 366 aa7.31□□□□□ -1.24
SMC4-220ENST00000488017 PPP1R15AO75807 674 aaPredicted RBP7.31□□□□□ -1.24
SMC4-220ENST00000488017 GSTP1P09211 210 aaKnown RBP7.31□□□□□ -1.24
SMC4-220ENST00000488017 ZNF211Q13398 564 aaPredicted RBP7.31□□□□□ -1.24
SMC4-220ENST00000488017 TTLL4Q14679 1199 aa7.31□□□□□ -1.24
SMC4-220ENST00000488017 AMIGO3Q86WK7 504 aa7.31□□□□□ -1.24
SMC4-220ENST00000488017 ZSWIM9Q86XI8 627 aa7.31□□□□□ -1.24
SMC4-220ENST00000488017 NPHS2Q9NP85 383 aa7.31□□□□□ -1.24
SMC4-220ENST00000488017 ANO2Q9NQ90 1003 aa7.31□□□□□ -1.24
SMC4-220ENST00000488017 TMEM238LA0A1B0GVL6 79 aa7.3□□□□□ -1.24
SMC4-220ENST00000488017 RNGTTO60942 597 aaKnown RBP7.3□□□□□ -1.24
SMC4-220ENST00000488017 PDE3BQ13370 1112 aa7.3□□□□□ -1.24
SMC4-220ENST00000488017 TRAK1Q9UPV9 953 aa7.3□□□□□ -1.24
SMC4-220ENST00000488017 FAAP100Q0VG06 881 aa7.29□□□□□ -1.24
SMC4-220ENST00000488017 ASB11Q8WXH4 323 aa7.29□□□□□ -1.24
SMC4-220ENST00000488017 ZC3H12CQ9C0D7 883 aaKnown RBP7.29□□□□□ -1.24
SMC4-220ENST00000488017 ICMTO60725 284 aa7.28□□□□□ -1.24
SMC4-220ENST00000488017 HCLS1P14317 486 aaPredicted RBP7.28□□□□□ -1.24
SMC4-220ENST00000488017 KCNMB1Q16558 191 aa7.28□□□□□ -1.24
SMC4-220ENST00000488017 DNAJC25Q9H1X3 360 aa7.28□□□□□ -1.24
SMC4-220ENST00000488017 PPP2R3AQ06190 1150 aa7.27□□□□□ -1.25
SMC4-220ENST00000488017 ORC1Q13415 861 aa7.27□□□□□ -1.25
SMC4-220ENST00000488017 SYDE1Q6ZW31 735 aaPredicted RBP7.27□□□□□ -1.25
SMC4-220ENST00000488017 TOP6BLQ8N6T0 577 aa7.27□□□□□ -1.25
SMC4-220ENST00000488017 CCDC74AQ96AQ1 378 aa7.27□□□□□ -1.25
SMC4-220ENST00000488017 CITED4Q96RK1 184 aa7.27□□□□□ -1.25
SMC4-220ENST00000488017 FAM129BQ96TA1 746 aa7.27□□□□□ -1.25
SMC4-220ENST00000488017 GTF2IRD1Q9UHL9 959 aa7.27□□□□□ -1.25
SMC4-220ENST00000488017 IGF2BP3O00425 579 aaKnown RBP eCLIP7.26□□□□□ -1.25
SMC4-220ENST00000488017 NDUFB5O43674 189 aa7.26□□□□□ -1.25
SMC4-220ENST00000488017 NEFMP07197 916 aa7.26□□□□□ -1.25
SMC4-220ENST00000488017 INHBBP09529 407 aa7.26□□□□□ -1.25
SMC4-220ENST00000488017 ZNF157P51786 506 aaPredicted RBP7.26□□□□□ -1.25
SMC4-220ENST00000488017 CTSWP56202 376 aa7.26□□□□□ -1.25
SMC4-220ENST00000488017 PDZD3Q86UT5 571 aa7.26□□□□□ -1.25
SMC4-220ENST00000488017 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.26□□□□□ -1.25
SMC4-220ENST00000488017 ISL2Q96A47 359 aa7.26□□□□□ -1.25
SMC4-220ENST00000488017 SSU72Q9NP77 194 aaKnown RBP7.26□□□□□ -1.25
SMC4-220ENST00000488017 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.25□□□□□ -1.25
SMC4-220ENST00000488017 GADD45BO75293 160 aaPredicted RBP7.25□□□□□ -1.25
SMC4-220ENST00000488017 ITIH2P19823 946 aa7.25□□□□□ -1.25
SMC4-220ENST00000488017 ERVK-24P63145 666 aa7.25□□□□□ -1.25
SMC4-220ENST00000488017 IKZF1Q13422 519 aa7.25□□□□□ -1.25
SMC4-220ENST00000488017 FAM214BQ7L5A3 538 aa7.25□□□□□ -1.25
SMC4-220ENST00000488017 RNF214Q8ND24 703 aa7.25□□□□□ -1.25
SMC4-220ENST00000488017 HEXIM2Q96MH2 286 aaKnown RBP7.25□□□□□ -1.25
SMC4-220ENST00000488017 CTNND2Q9UQB3 1225 aa7.25□□□□□ -1.25
SMC4-220ENST00000488017 KRT1P04264 644 aa7.24□□□□□ -1.25
SMC4-220ENST00000488017 C1QTNF9P0C862 333 aa7.24□□□□□ -1.25
SMC4-220ENST00000488017 AFMP43652 599 aa7.24□□□□□ -1.25
SMC4-220ENST00000488017 ZP2Q05996 745 aa7.24□□□□□ -1.25
SMC4-220ENST00000488017 ZC3H12AQ5D1E8 599 aaKnown RBP7.24□□□□□ -1.25
SMC4-220ENST00000488017 KCNB2Q92953 911 aa7.24□□□□□ -1.25
SMC4-220ENST00000488017 LIN37Q96GY3 246 aaPredicted RBP7.24□□□□□ -1.25
SMC4-220ENST00000488017 CSRNP1Q96S65 589 aa7.24□□□□□ -1.25
SMC4-220ENST00000488017 TMEM39AQ9NV64 488 aa7.24□□□□□ -1.25
SMC4-220ENST00000488017 EIF1AYO14602 144 aaKnown RBP7.23□□□□□ -1.25
SMC4-220ENST00000488017 GRM2Q14416 872 aa7.23□□□□□ -1.25
SMC4-220ENST00000488017 GLYCTKQ8IVS8 523 aa7.23□□□□□ -1.25
SMC4-220ENST00000488017 PRDM7Q9NQW5 492 aa7.23□□□□□ -1.25
SMC4-220ENST00000488017 H3BRB1 525 aa7.22□□□□□ -1.25
SMC4-220ENST00000488017 XRCC5P13010 732 aaKnown RBP7.22□□□□□ -1.25
SMC4-220ENST00000488017 CLCN7P51798 805 aa7.22□□□□□ -1.25
SMC4-220ENST00000488017 ARHGAP4P98171 946 aa7.22□□□□□ -1.25
SMC4-220ENST00000488017 DTHD1Q6ZMT9 781 aa7.22□□□□□ -1.25
SMC4-220ENST00000488017 SPACA3Q8IXA5 215 aa7.22□□□□□ -1.25
SMC4-220ENST00000488017 TUT1Q9H6E5 874 aaKnown RBP7.22□□□□□ -1.25
SMC4-220ENST00000488017 PPP4R2Q9NY27 417 aa7.22□□□□□ -1.25
SMC4-220ENST00000488017 GPN3Q9UHW5 284 aaPredicted RBP7.22□□□□□ -1.25
SMC4-220ENST00000488017 GLI1P08151 1106 aa7.21□□□□□ -1.26
SMC4-220ENST00000488017 B4GALNT3Q6L9W6 998 aa7.21□□□□□ -1.26
SMC4-220ENST00000488017 SULF2Q8IWU5 870 aa7.21□□□□□ -1.26
SMC4-220ENST00000488017 EMILIN2Q9BXX0 1053 aa7.21□□□□□ -1.26
SMC4-220ENST00000488017 PRDM10Q9NQV6 1147 aa7.21□□□□□ -1.26
SMC4-220ENST00000488017 NFIBO00712 420 aa7.2□□□□□ -1.26
SMC4-220ENST00000488017 ARNTP27540 789 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms