RNA–Protein interactions for RNA: ENST00000487428.1

PTPRE-209, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 3

Gene PTPRE, Length 325 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-209ENST00000487428 USP40Q9NVE5 1235 aa8.03□□□□□ -1.12
PTPRE-209ENST00000487428 HERC5Q9UII4 1024 aaKnown RBP8.03□□□□□ -1.12
PTPRE-209ENST00000487428 ZNF112Q9UJU3 913 aa8.03□□□□□ -1.12
PTPRE-209ENST00000487428 TLL2Q9Y6L7 1015 aa8.03□□□□□ -1.12
PTPRE-209ENST00000487428 RAD50Q92878 1312 aa8.03□□□□□ -1.12
PTPRE-209ENST00000487428 MAGEB6P1A0A0J9YX57 407 aa8.02□□□□□ -1.13
PTPRE-209ENST00000487428 PPP1R12BO60237 982 aaPredicted RBP8.02□□□□□ -1.13
PTPRE-209ENST00000487428 RGS3P49796 1198 aa8.02□□□□□ -1.13
PTPRE-209ENST00000487428 NFIAQ12857 509 aa8.02□□□□□ -1.13
PTPRE-209ENST00000487428 DCAF15Q66K64 600 aa8.02□□□□□ -1.13
PTPRE-209ENST00000487428 FOXP4Q8IVH2 680 aaPredicted RBP8.02□□□□□ -1.13
PTPRE-209ENST00000487428 C2orf69Q8N8R5 385 aa8.02□□□□□ -1.13
PTPRE-209ENST00000487428 EDC3Q96F86 508 aaKnown RBP8.02□□□□□ -1.13
PTPRE-209ENST00000487428 CRNKL1Q9BZJ0 848 aaKnown RBP8.02□□□□□ -1.13
PTPRE-209ENST00000487428 OSBPL5Q9H0X9 879 aaPredicted RBP8.02□□□□□ -1.13
PTPRE-209ENST00000487428 GBA2Q9HCG7 927 aaPredicted RBP8.02□□□□□ -1.13
PTPRE-209ENST00000487428 AATFQ9NY61 560 aaKnown RBP eCLIP8.02□□□□□ -1.13
PTPRE-209ENST00000487428 PI4KBQ9UBF8 816 aa8.02□□□□□ -1.13
PTPRE-209ENST00000487428 NDUFB9Q9Y6M9 179 aa8.02□□□□□ -1.13
PTPRE-209ENST00000487428 FLT1P17948 1338 aa8.02□□□□□ -1.13
PTPRE-209ENST00000487428 ROBO3Q96MS0 1386 aa8.01□□□□□ -1.13
PTPRE-209ENST00000487428 CLRN2A0PK11 232 aa8.01□□□□□ -1.13
PTPRE-209ENST00000487428 ADM5C9JUS6 153 aa8.01□□□□□ -1.13
PTPRE-209ENST00000487428 GSPT1P15170 499 aaKnown RBP8.01□□□□□ -1.13
PTPRE-209ENST00000487428 MFAP1P55081 439 aaKnown RBP8.01□□□□□ -1.13
PTPRE-209ENST00000487428 ALX1Q15699 326 aa8.01□□□□□ -1.13
PTPRE-209ENST00000487428 SBK1Q52WX2 424 aa8.01□□□□□ -1.13
PTPRE-209ENST00000487428 NOL9Q5SY16 702 aaKnown RBP8.01□□□□□ -1.13
PTPRE-209ENST00000487428 ARMC9Q7Z3E5 817 aa8.01□□□□□ -1.13
PTPRE-209ENST00000487428 TEX11Q8IYF3 940 aa8.01□□□□□ -1.13
PTPRE-209ENST00000487428 REM2Q8IYK8 340 aaPredicted RBP8.01□□□□□ -1.13
PTPRE-209ENST00000487428 SH3RF3Q8TEJ3 882 aaPredicted RBP8.01□□□□□ -1.13
PTPRE-209ENST00000487428 OSBP2Q969R2 916 aa8.01□□□□□ -1.13
PTPRE-209ENST00000487428 KLRG1Q96E93 195 aa8.01□□□□□ -1.13
PTPRE-209ENST00000487428 STRBPQ96SI9 672 aaKnown RBP8.01□□□□□ -1.13
PTPRE-209ENST00000487428 FSD1Q9BTV5 496 aa8.01□□□□□ -1.13
PTPRE-209ENST00000487428 TBC1D2Q9BYX2 928 aa8.01□□□□□ -1.13
PTPRE-209ENST00000487428 PUS7LQ9H0K6 701 aaKnown RBP8.01□□□□□ -1.13
PTPRE-209ENST00000487428 VEZTQ9HBM0 779 aa8.01□□□□□ -1.13
PTPRE-209ENST00000487428 DDX4Q9NQI0 724 aaKnown RBP8.01□□□□□ -1.13
PTPRE-209ENST00000487428 TCP10L2B9ZVM9 353 aa8□□□□□ -1.13
PTPRE-209ENST00000487428 TRAF5O00463 557 aa8□□□□□ -1.13
PTPRE-209ENST00000487428 EPB41L2O43491 1005 aaKnown RBP8□□□□□ -1.13
PTPRE-209ENST00000487428 CELF2O95319 508 aaKnown RBP8□□□□□ -1.13
PTPRE-209ENST00000487428 SDSP20132 328 aa8□□□□□ -1.13
PTPRE-209ENST00000487428 IREB2P48200 963 aaKnown RBP8□□□□□ -1.13
PTPRE-209ENST00000487428 GABPAQ06546 454 aa8□□□□□ -1.13
PTPRE-209ENST00000487428 MCMDC2Q4G0Z9 681 aa8□□□□□ -1.13
PTPRE-209ENST00000487428 NBPF12Q5TAG4 269 aaPredicted RBP8□□□□□ -1.13
PTPRE-209ENST00000487428 TSHZ3Q63HK5 1081 aa8□□□□□ -1.13
PTPRE-209ENST00000487428 SH3BP5LQ7L8J4 393 aa8□□□□□ -1.13
PTPRE-209ENST00000487428 TTC6Q86TZ1 520 aa8□□□□□ -1.13
PTPRE-209ENST00000487428 ANKRD13AQ8IZ07 590 aa8□□□□□ -1.13
PTPRE-209ENST00000487428 DNAJC5GQ8N7S2 189 aa8□□□□□ -1.13
PTPRE-209ENST00000487428 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8□□□□□ -1.13
PTPRE-209ENST00000487428 CCDC102AQ96A19 550 aa8□□□□□ -1.13
PTPRE-209ENST00000487428 AIDAQ96BJ3 306 aa8□□□□□ -1.13
PTPRE-209ENST00000487428 ZNF341Q9BYN7 854 aa8□□□□□ -1.13
PTPRE-209ENST00000487428 TMEM39BQ9GZU3 492 aa8□□□□□ -1.13
PTPRE-209ENST00000487428 DCP1AQ9NPI6 582 aaPredicted RBP8□□□□□ -1.13
PTPRE-209ENST00000487428 LOC285556D6RIA3 1793 aa7.99□□□□□ -1.13
PTPRE-209ENST00000487428 MYH4Q9Y623 1939 aa7.99□□□□□ -1.13
PTPRE-209ENST00000487428 DDTLA6NHG4 134 aaPredicted RBP7.99□□□□□ -1.13
PTPRE-209ENST00000487428 GSG1L2A8MUP6 293 aa7.99□□□□□ -1.13
PTPRE-209ENST00000487428 PHF20L1A8MW92 1017 aa7.99□□□□□ -1.13
PTPRE-209ENST00000487428 GPAA1O43292 621 aa7.99□□□□□ -1.13
PTPRE-209ENST00000487428 USP2O75604 605 aaPredicted RBP7.99□□□□□ -1.13
PTPRE-209ENST00000487428 MBD4O95243 580 aa7.99□□□□□ -1.13
PTPRE-209ENST00000487428 ZBTB48P10074 688 aaPredicted RBP7.99□□□□□ -1.13
PTPRE-209ENST00000487428 PCP11498 1178 aaKnown RBP7.99□□□□□ -1.13
PTPRE-209ENST00000487428 MAP2K2P36507 400 aa7.99□□□□□ -1.13
PTPRE-209ENST00000487428 ECE1P42892 770 aa7.99□□□□□ -1.13
PTPRE-209ENST00000487428 DYNLL1P63167 89 aaKnown RBP7.99□□□□□ -1.13
PTPRE-209ENST00000487428 C12orf60Q5U649 245 aa7.99□□□□□ -1.13
PTPRE-209ENST00000487428 TATDN1Q6P1N9 297 aa7.99□□□□□ -1.13
PTPRE-209ENST00000487428 LCORLQ8N3X6 602 aa7.99□□□□□ -1.13
PTPRE-209ENST00000487428 TGFBRAP1Q8WUH2 860 aa7.99□□□□□ -1.13
PTPRE-209ENST00000487428 DDRGK1Q96HY6 314 aa7.99□□□□□ -1.13
PTPRE-209ENST00000487428 CSRNP1Q96S65 589 aa7.99□□□□□ -1.13
PTPRE-209ENST00000487428 ARPP21Q9UBL0 812 aaPredicted RBP7.99□□□□□ -1.13
PTPRE-209ENST00000487428 SWAP70Q9UH65 585 aa7.99□□□□□ -1.13
PTPRE-209ENST00000487428 CEP350Q5VT06 3117 aa7.99□□□□□ -1.13
PTPRE-209ENST00000487428 TRIM6-TRIM34B2RNG4 842 aa7.98□□□□□ -1.13
PTPRE-209ENST00000487428 PATL2C9JE40 543 aaKnown RBP7.98□□□□□ -1.13
PTPRE-209ENST00000487428 CTNND1O60716 968 aaKnown RBP7.98□□□□□ -1.13
PTPRE-209ENST00000487428 HLA-DOAP06340 250 aa7.98□□□□□ -1.13
PTPRE-209ENST00000487428 FGRP09769 529 aa7.98□□□□□ -1.13
PTPRE-209ENST00000487428 USP5P45974 858 aa7.98□□□□□ -1.13
PTPRE-209ENST00000487428 CACNB3P54284 484 aa7.98□□□□□ -1.13
PTPRE-209ENST00000487428 MAP3K9P80192 1104 aa7.98□□□□□ -1.13
PTPRE-209ENST00000487428 NOGQ13253 232 aa7.98□□□□□ -1.13
PTPRE-209ENST00000487428 DEFB115Q30KQ5 88 aa7.98□□□□□ -1.13
PTPRE-209ENST00000487428 RGMBQ6NW40 437 aa7.98□□□□□ -1.13
PTPRE-209ENST00000487428 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.98□□□□□ -1.13
PTPRE-209ENST00000487428 JMYQ8N9B5 988 aa7.98□□□□□ -1.13
PTPRE-209ENST00000487428 MIGA1Q8NAN2 632 aa7.98□□□□□ -1.13
PTPRE-209ENST00000487428 RUFY2Q8WXA3 655 aa7.98□□□□□ -1.13
PTPRE-209ENST00000487428 DSCC1Q9BVC3 393 aa7.98□□□□□ -1.13
PTPRE-209ENST00000487428 NACAP1Q9BZK3 213 aa7.98□□□□□ -1.13
PTPRE-209ENST00000487428 SERPINB13Q9UIV8 391 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms