RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 LRCH2Q5VUJ6 765 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 GOLGA6AQ9NYA3 693 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 ATP7AQ04656 1500 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 PLCB3Q01970 1234 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 SDCCAG8Q86SQ7 713 aaPredicted RBP9.89□□□□□ -0.83
SYNE1-224ENST00000478916 TACC3Q9Y6A5 838 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 SH3BP5O60239 455 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 SDSP20132 328 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 HPDP32754 393 aaPredicted RBP9.89□□□□□ -0.83
SYNE1-224ENST00000478916 TYRO3Q06418 890 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 TMOD4Q9NZQ9 345 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 GCKP35557 465 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 PRR16Q569H4 304 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 MYCBPQ99417 103 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-224ENST00000478916 MRVI1Q9Y6F6 885 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 EDC4Q6P2E9 1401 aaKnown RBP9.88□□□□□ -0.83
SYNE1-224ENST00000478916 TRPC3Q13507 836 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 GGA1Q9UJY5 639 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 PPFIA2O75334 1257 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 ZNF354CQ86Y25 554 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 NEK11Q8NG66 645 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 PLBD2Q8NHP8 589 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 H0YIN7 160 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 MGEA5O60502 916 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 PRIM1P49642 420 aaKnown RBP9.88□□□□□ -0.83
SYNE1-224ENST00000478916 NMIQ13287 307 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-224ENST00000478916 CLUL1Q15846 466 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 HSP90AA4PQ58FG1 418 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 AP1ARQ63HQ0 302 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 Q6ZUG5 572 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 TMX3Q96JJ7 454 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 ESYT1Q9BSJ8 1104 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 KIF21AQ7Z4S6 1674 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 PDE6BP35913 854 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 ZNF131P52739 623 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 TFCP2Q12800 502 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 MIER3Q7Z3K6 550 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 MIGA1Q8NAN2 632 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 CCT6BQ92526 530 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 WWC3Q9ULE0 1092 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 PIK3C2GO75747 1445 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 ARHGEF12Q9NZN5 1544 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 KRT2P35908 639 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 CCDC87Q9NVE4 849 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 BIN2Q9UBW5 565 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-224ENST00000478916 ATP6V0A2Q9Y487 856 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 MAP3K19Q56UN5 1328 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 SH3TC1Q8TE82 1336 aa9.88□□□□□ -0.83
SYNE1-224ENST00000478916 BICDL2A1A5D9 508 aa9.87□□□□□ -0.83
SYNE1-224ENST00000478916 VGLL3A8MV65 326 aa9.87□□□□□ -0.83
SYNE1-224ENST00000478916 TERF1P54274 439 aa9.87□□□□□ -0.83
SYNE1-224ENST00000478916 CWF19L2Q2TBE0 894 aaKnown RBP9.87□□□□□ -0.83
SYNE1-224ENST00000478916 DDX21Q9NR30 783 aaKnown RBP eCLIP9.87□□□□□ -0.83
SYNE1-224ENST00000478916 RAD50Q92878 1312 aa9.87□□□□□ -0.83
SYNE1-224ENST00000478916 RTL1A6NKG5 1358 aa9.87□□□□□ -0.83
SYNE1-224ENST00000478916 U2AF2P26368 475 aaKnown RBP eCLIP9.87□□□□□ -0.83
SYNE1-224ENST00000478916 HSPA1LP34931 641 aa9.87□□□□□ -0.83
SYNE1-224ENST00000478916 UBXN1Q04323 297 aa9.87□□□□□ -0.83
SYNE1-224ENST00000478916 KRT79Q5XKE5 535 aa9.87□□□□□ -0.83
SYNE1-224ENST00000478916 BANK1Q8NDB2 785 aa9.87□□□□□ -0.83
SYNE1-224ENST00000478916 DACT1Q9NYF0 836 aa9.87□□□□□ -0.83
SYNE1-224ENST00000478916 TXNDC9O14530 226 aa9.87□□□□□ -0.83
SYNE1-224ENST00000478916 TAOK1Q7L7X3 1001 aa9.87□□□□□ -0.83
SYNE1-224ENST00000478916 CROCCP2Q86T23 111 aa9.87□□□□□ -0.83
SYNE1-224ENST00000478916 USP21Q9UK80 565 aa9.87□□□□□ -0.83
SYNE1-224ENST00000478916 PA2G4Q9UQ80 394 aaKnown RBP9.87□□□□□ -0.83
SYNE1-224ENST00000478916 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.87□□□□□ -0.83
SYNE1-224ENST00000478916 GJC1P36383 396 aa9.87□□□□□ -0.83
SYNE1-224ENST00000478916 HELBQ8NG08 1087 aaPredicted RBP9.87□□□□□ -0.83
SYNE1-224ENST00000478916 CFAP74Q9C0B2 1584 aa9.87□□□□□ -0.83
SYNE1-224ENST00000478916 PARP1P09874 1014 aaKnown RBP9.87□□□□□ -0.83
SYNE1-224ENST00000478916 PUM3Q15397 648 aaKnown RBP9.87□□□□□ -0.83
SYNE1-224ENST00000478916 SEL1L2Q5TEA6 688 aa9.87□□□□□ -0.83
SYNE1-224ENST00000478916 ARHGEF10LQ9HCE6 1279 aa9.87□□□□□ -0.83
SYNE1-224ENST00000478916 FAM13AO94988 1023 aa9.87□□□□□ -0.83
SYNE1-224ENST00000478916 BAG6P46379 1132 aa9.87□□□□□ -0.83
SYNE1-224ENST00000478916 ARID5AQ03989 594 aa9.87□□□□□ -0.83
SYNE1-224ENST00000478916 TEX11Q8IYF3 940 aa9.87□□□□□ -0.83
SYNE1-224ENST00000478916 HMGB1P1B2RPK0 211 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-224ENST00000478916 BRDTQ58F21 947 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-224ENST00000478916 ZNF790Q6PG37 636 aa9.86□□□□□ -0.83
SYNE1-224ENST00000478916 CFAP43Q8NDM7 1665 aa9.86□□□□□ -0.83
SYNE1-224ENST00000478916 TRIM75PA6NK02 468 aa9.86□□□□□ -0.83
SYNE1-224ENST00000478916 ASIC1P78348 528 aa9.86□□□□□ -0.83
SYNE1-224ENST00000478916 CNGA4Q8IV77 575 aa9.86□□□□□ -0.83
SYNE1-224ENST00000478916 ZBTB9Q96C00 473 aa9.86□□□□□ -0.83
SYNE1-224ENST00000478916 RAB3IPQ96QF0 476 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-224ENST00000478916 CSRNP2Q9H175 543 aa9.86□□□□□ -0.83
SYNE1-224ENST00000478916 IRX4P78413 519 aa9.86□□□□□ -0.83
SYNE1-224ENST00000478916 FAM98CQ17RN3 349 aaKnown RBP9.86□□□□□ -0.83
SYNE1-224ENST00000478916 BICC1Q9H694 974 aaKnown RBP9.86□□□□□ -0.83
SYNE1-224ENST00000478916 UTP11Q9Y3A2 253 aaKnown RBP9.86□□□□□ -0.83
SYNE1-224ENST00000478916 HIBADHP31937 336 aaKnown RBP9.86□□□□□ -0.83
SYNE1-224ENST00000478916 TMCO4Q5TGY1 634 aa9.86□□□□□ -0.83
SYNE1-224ENST00000478916 RUFY4Q6ZNE9 571 aa9.86□□□□□ -0.83
SYNE1-224ENST00000478916 VSIG1Q86XK7 387 aa9.86□□□□□ -0.83
SYNE1-224ENST00000478916 PDE8AO60658 829 aa9.86□□□□□ -0.83
SYNE1-224ENST00000478916 HOXB7P09629 217 aa9.86□□□□□ -0.83
SYNE1-224ENST00000478916 IFNKQ9P0W0 207 aa9.86□□□□□ -0.83
SYNE1-224ENST00000478916 COL17A1Q9UMD9 1497 aaPredicted RBP9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms