RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 ABHD8Q96I13 439 aa26.64■■□□□ 1.86
COL9A3-211ENST00000477612 DDX4Q9NQI0 724 aaKnown RBP26.64■■□□□ 1.86
COL9A3-211ENST00000477612 ZAP70P43403 619 aa26.63■■□□□ 1.85
COL9A3-211ENST00000477612 SH3BP5LQ7L8J4 393 aa26.63■■□□□ 1.85
COL9A3-211ENST00000477612 ERO1BQ86YB8 467 aa26.63■■□□□ 1.85
COL9A3-211ENST00000477612 ZKSCAN4Q969J2 545 aaPredicted RBP26.63■■□□□ 1.85
COL9A3-211ENST00000477612 PTPN18Q99952 460 aa26.63■■□□□ 1.85
COL9A3-211ENST00000477612 FOCADQ5VW36 1801 aa26.62■■□□□ 1.85
COL9A3-211ENST00000477612 GPR25O00155 361 aa26.62■■□□□ 1.85
COL9A3-211ENST00000477612 RAB11FIP3O75154 756 aa26.62■■□□□ 1.85
COL9A3-211ENST00000477612 AACSQ86V21 672 aa26.62■■□□□ 1.85
COL9A3-211ENST00000477612 MCOLN1Q9GZU1 580 aa26.62■■□□□ 1.85
COL9A3-211ENST00000477612 GTF2A2P52657 109 aa26.61■■□□□ 1.85
COL9A3-211ENST00000477612 DGKZQ13574 1117 aa26.61■■□□□ 1.85
COL9A3-211ENST00000477612 NOL9Q5SY16 702 aaKnown RBP26.61■■□□□ 1.85
COL9A3-211ENST00000477612 OTUD7BQ6GQQ9 843 aa26.61■■□□□ 1.85
COL9A3-211ENST00000477612 ZNF296Q8WUU4 475 aaPredicted RBP26.61■■□□□ 1.85
COL9A3-211ENST00000477612 R3HDMLQ9H3Y0 253 aa26.61■■□□□ 1.85
COL9A3-211ENST00000477612 IL1RAPL2Q9NP60 686 aa26.61■■□□□ 1.85
COL9A3-211ENST00000477612 COL2A1P02458 1487 aaPredicted RBP26.61■■□□□ 1.85
COL9A3-211ENST00000477612 DDTLA6NHG4 134 aaPredicted RBP26.6■■□□□ 1.85
COL9A3-211ENST00000477612 INPP5BP32019 993 aa26.6■■□□□ 1.85
COL9A3-211ENST00000477612 PPP4CP60510 307 aa26.6■■□□□ 1.85
COL9A3-211ENST00000477612 NAA16Q6N069 864 aaPredicted RBP26.6■■□□□ 1.85
COL9A3-211ENST00000477612 CLASRPQ8N2M8 674 aaKnown RBP26.6■■□□□ 1.85
COL9A3-211ENST00000477612 CAPN15O75808 1086 aa26.59■■□□□ 1.85
COL9A3-211ENST00000477612 PPATQ06203 517 aa26.59■■□□□ 1.85
COL9A3-211ENST00000477612 OTUD5Q96G74 571 aa26.59■■□□□ 1.85
COL9A3-211ENST00000477612 PHF20L1A8MW92 1017 aa26.58■■□□□ 1.85
COL9A3-211ENST00000477612 PPIL2Q13356 520 aa26.58■■□□□ 1.85
COL9A3-211ENST00000477612 BRI3BPQ8WY22 251 aa26.58■■□□□ 1.85
COL9A3-211ENST00000477612 PIH1D3Q9NQM4 214 aaKnown RBP26.58■■□□□ 1.85
COL9A3-211ENST00000477612 IRF6O14896 467 aa26.57■■□□□ 1.84
COL9A3-211ENST00000477612 TBC1D12O60347 775 aa26.57■■□□□ 1.84
COL9A3-211ENST00000477612 BAG3O95817 575 aa26.57■■□□□ 1.84
COL9A3-211ENST00000477612 PICALMQ13492 652 aa26.57■■□□□ 1.84
COL9A3-211ENST00000477612 TMED8Q6PL24 325 aaPredicted RBP26.57■■□□□ 1.84
COL9A3-211ENST00000477612 CTU1Q7Z7A3 348 aaKnown RBP26.57■■□□□ 1.84
COL9A3-211ENST00000477612 PPIL4Q8WUA2 492 aaKnown RBP eCLIP26.57■■□□□ 1.84
COL9A3-211ENST00000477612 PLCG2P16885 1265 aa26.56■■□□□ 1.84
COL9A3-211ENST00000477612 ADGRA1Q86SQ6 560 aa26.56■■□□□ 1.84
COL9A3-211ENST00000477612 ZSCAN29Q8IWY8 852 aaPredicted RBP26.56■■□□□ 1.84
COL9A3-211ENST00000477612 DOCK1Q14185 1865 aa26.55■■□□□ 1.84
COL9A3-211ENST00000477612 CCL15-CCL14A0A0B4J2E2 113 aa26.55■■□□□ 1.84
COL9A3-211ENST00000477612 FKTNO75072 461 aa26.55■■□□□ 1.84
COL9A3-211ENST00000477612 CCL15Q16663 113 aa26.55■■□□□ 1.84
COL9A3-211ENST00000477612 NOL10Q9BSC4 688 aaKnown RBP26.55■■□□□ 1.84
COL9A3-211ENST00000477612 OSBPL5Q9H0X9 879 aaPredicted RBP26.55■■□□□ 1.84
COL9A3-211ENST00000477612 ZCCHC17Q9NP64 241 aaKnown RBP26.55■■□□□ 1.84
COL9A3-211ENST00000477612 PHIPQ8WWQ0 1821 aa26.55■■□□□ 1.84
COL9A3-211ENST00000477612 CETPP11597 493 aa26.54■■□□□ 1.84
COL9A3-211ENST00000477612 SNAPC2Q13487 334 aa26.54■■□□□ 1.84
COL9A3-211ENST00000477612 TEX11Q8IYF3 940 aa26.54■■□□□ 1.84
COL9A3-211ENST00000477612 SH3RF3Q8TEJ3 882 aaPredicted RBP26.54■■□□□ 1.84
COL9A3-211ENST00000477612 AATFQ9NY61 560 aaKnown RBP eCLIP26.54■■□□□ 1.84
COL9A3-211ENST00000477612 KCNH4Q9UQ05 1017 aa26.54■■□□□ 1.84
COL9A3-211ENST00000477612 SIPA1L1O43166 1804 aa26.53■■□□□ 1.84
COL9A3-211ENST00000477612 CRHR2Q13324 411 aa26.53■■□□□ 1.84
COL9A3-211ENST00000477612 ANTXR1Q9H6X2 564 aa26.53■■□□□ 1.84
COL9A3-211ENST00000477612 PTPRFP10586 1907 aa26.53■■□□□ 1.84
COL9A3-211ENST00000477612 APBB1O00213 710 aa26.52■■□□□ 1.84
COL9A3-211ENST00000477612 IFIT2P09913 472 aaKnown RBP26.52■■□□□ 1.84
COL9A3-211ENST00000477612 PKN2Q16513 984 aaKnown RBP26.52■■□□□ 1.84
COL9A3-211ENST00000477612 NDUFB9Q9Y6M9 179 aa26.52■■□□□ 1.84
COL9A3-211ENST00000477612 CTNND1O60716 968 aaKnown RBP26.51■■□□□ 1.83
COL9A3-211ENST00000477612 CERS3Q8IU89 383 aa26.51■■□□□ 1.83
COL9A3-211ENST00000477612 SCYL3Q8IZE3 742 aa26.51■■□□□ 1.83
COL9A3-211ENST00000477612 FAM43AQ8N2R8 423 aa26.51■■□□□ 1.83
COL9A3-211ENST00000477612 MYH1P12882 1939 aa26.51■■□□□ 1.83
COL9A3-211ENST00000477612 ATAD5Q96QE3 1844 aa26.51■■□□□ 1.83
COL9A3-211ENST00000477612 IDH1O75874 414 aaKnown RBP26.5■■□□□ 1.83
COL9A3-211ENST00000477612 CYP7A1P22680 504 aa26.5■■□□□ 1.83
COL9A3-211ENST00000477612 MAP3K12Q12852 859 aa26.5■■□□□ 1.83
COL9A3-211ENST00000477612 TTF1Q15361 905 aaPredicted RBP26.5■■□□□ 1.83
COL9A3-211ENST00000477612 DHX36Q9H2U1 1008 aaKnown RBP26.5■■□□□ 1.83
COL9A3-211ENST00000477612 SLURP2P0DP57 97 aa26.49■■□□□ 1.83
COL9A3-211ENST00000477612 RRP1P56182 461 aaKnown RBP26.49■■□□□ 1.83
COL9A3-211ENST00000477612 DCTPP1Q9H773 170 aa26.49■■□□□ 1.83
COL9A3-211ENST00000477612 BTBD19C9JJ37 291 aa26.48■■□□□ 1.83
COL9A3-211ENST00000477612 CXCL11O14625 94 aa26.48■■□□□ 1.83
COL9A3-211ENST00000477612 PTPRAP18433 802 aa26.48■■□□□ 1.83
COL9A3-211ENST00000477612 MAGEB6Q8N7X4 407 aa26.48■■□□□ 1.83
COL9A3-211ENST00000477612 TGFBRAP1Q8WUH2 860 aa26.48■■□□□ 1.83
COL9A3-211ENST00000477612 LRRCC1Q9C099 1032 aa26.48■■□□□ 1.83
COL9A3-211ENST00000477612 ZFYVE28Q9HCC9 887 aa26.48■■□□□ 1.83
COL9A3-211ENST00000477612 MOGSQ13724 837 aa26.47■■□□□ 1.83
COL9A3-211ENST00000477612 TAF1CQ15572 869 aaPredicted RBP26.47■■□□□ 1.83
COL9A3-211ENST00000477612 METTL16Q86W50 562 aaKnown RBP26.47■■□□□ 1.83
COL9A3-211ENST00000477612 XPO5Q9HAV4 1204 aaKnown RBP eCLIP26.47■■□□□ 1.83
COL9A3-211ENST00000477612 PI4KBQ9UBF8 816 aa26.47■■□□□ 1.83
COL9A3-211ENST00000477612 HERC5Q9UII4 1024 aaKnown RBP26.47■■□□□ 1.83
COL9A3-211ENST00000477612 FLT1P17948 1338 aa26.46■■□□□ 1.83
COL9A3-211ENST00000477612 MYH7P12883 1935 aa26.46■■□□□ 1.83
COL9A3-211ENST00000477612 ATP5JP18859 108 aa26.46■■□□□ 1.83
COL9A3-211ENST00000477612 DYNLL1P63167 89 aaKnown RBP26.46■■□□□ 1.83
COL9A3-211ENST00000477612 ANKRD23Q86SG2 305 aa26.46■■□□□ 1.83
COL9A3-211ENST00000477612 PICK1Q9NRD5 415 aa26.46■■□□□ 1.83
COL9A3-211ENST00000477612 AFG3L2Q9Y4W6 797 aa26.46■■□□□ 1.83
COL9A3-211ENST00000477612 CCDC85CA6NKD9 419 aa26.45■■□□□ 1.82
COL9A3-211ENST00000477612 SP3Q02447 781 aa26.45■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms