RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 PUM3Q15397 648 aaKnown RBP20.87■□□□□ 0.93
CCM2-209ENST00000477605 TMC6Q7Z403 805 aa20.87■□□□□ 0.93
CCM2-209ENST00000477605 MYH7P12883 1935 aa20.87■□□□□ 0.93
CCM2-209ENST00000477605 CBX1P83916 185 aa20.87■□□□□ 0.93
CCM2-209ENST00000477605 FANCCQ00597 558 aa20.87■□□□□ 0.93
CCM2-209ENST00000477605 DMTNQ08495 405 aa20.87■□□□□ 0.93
CCM2-209ENST00000477605 HLFQ16534 295 aa20.87■□□□□ 0.93
CCM2-209ENST00000477605 RAB11FIP4Q86YS3 637 aa20.87■□□□□ 0.93
CCM2-209ENST00000477605 SEPT12Q8IYM1 358 aa20.87■□□□□ 0.93
CCM2-209ENST00000477605 FBXW7Q969H0 707 aa20.87■□□□□ 0.93
CCM2-209ENST00000477605 AIDAQ96BJ3 306 aa20.87■□□□□ 0.93
CCM2-209ENST00000477605 NOL10Q9BSC4 688 aaKnown RBP20.87■□□□□ 0.93
CCM2-209ENST00000477605 LY9Q9HBG7 655 aa20.87■□□□□ 0.93
CCM2-209ENST00000477605 TOGARAM1Q9Y4F4 1720 aa20.86■□□□□ 0.93
CCM2-209ENST00000477605 GOLGA8AA7E2F4 631 aa20.86■□□□□ 0.93
CCM2-209ENST00000477605 FGFR2P21802 821 aa20.86■□□□□ 0.93
CCM2-209ENST00000477605 CDC27P30260 824 aa20.86■□□□□ 0.93
CCM2-209ENST00000477605 ARMCX5Q6P1M9 558 aa20.86■□□□□ 0.93
CCM2-209ENST00000477605 SHC4Q6S5L8 630 aa20.86■□□□□ 0.93
CCM2-209ENST00000477605 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.86■□□□□ 0.93
CCM2-209ENST00000477605 STRN4Q9NRL3 753 aa20.86■□□□□ 0.93
CCM2-209ENST00000477605 TRMT112Q9UI30 125 aaKnown RBP20.86■□□□□ 0.93
CCM2-209ENST00000477605 MROH7-TTC4A0A0A0MT08 1334 aa20.86■□□□□ 0.93
CCM2-209ENST00000477605 SPATA31A5Q5VU36 1347 aa20.86■□□□□ 0.93
CCM2-209ENST00000477605 SPATA31A7Q8IWB4 1347 aa20.86■□□□□ 0.93
CCM2-209ENST00000477605 BIN1O00499 593 aa20.85■□□□□ 0.93
CCM2-209ENST00000477605 ZSCAN20P17040 1043 aaPredicted RBP20.85■□□□□ 0.93
CCM2-209ENST00000477605 MARCKSP29966 332 aaPredicted RBP20.85■□□□□ 0.93
CCM2-209ENST00000477605 MYL5Q02045 173 aa20.85■□□□□ 0.93
CCM2-209ENST00000477605 TMEM67Q5HYA8 995 aa20.85■□□□□ 0.93
CCM2-209ENST00000477605 NFXL1Q6ZNB6 911 aa20.85■□□□□ 0.93
CCM2-209ENST00000477605 KRT23Q9C075 422 aa20.85■□□□□ 0.93
CCM2-209ENST00000477605 HOOK1Q9UJC3 728 aaKnown RBP20.85■□□□□ 0.93
CCM2-209ENST00000477605 PRDM4Q9UKN5 801 aa20.85■□□□□ 0.93
CCM2-209ENST00000477605 AKAP11Q9UKA4 1901 aa20.85■□□□□ 0.93
CCM2-209ENST00000477605 B4E1Z4 1266 aa20.85■□□□□ 0.93
CCM2-209ENST00000477605 CYP19A1P11511 503 aaPredicted RBP20.85■□□□□ 0.93
CCM2-209ENST00000477605 SSRP1Q08945 709 aaKnown RBP20.85■□□□□ 0.93
CCM2-209ENST00000477605 E4F1Q66K89 784 aaPredicted RBP20.85■□□□□ 0.93
CCM2-209ENST00000477605 TRMT1Q9NXH9 659 aaKnown RBP20.85■□□□□ 0.93
CCM2-209ENST00000477605 EP400Q96L91 3159 aa20.84■□□□□ 0.93
CCM2-209ENST00000477605 SLU7O95391 586 aaKnown RBP20.84■□□□□ 0.93
CCM2-209ENST00000477605 FMNL1O95466 1100 aaPredicted RBP20.84■□□□□ 0.93
CCM2-209ENST00000477605 IFNAR1P17181 557 aa20.84■□□□□ 0.93
CCM2-209ENST00000477605 GNAT2P19087 354 aa20.84■□□□□ 0.93
CCM2-209ENST00000477605 GPTP24298 496 aa20.84■□□□□ 0.93
CCM2-209ENST00000477605 PHKA1P46020 1223 aa20.84■□□□□ 0.93
CCM2-209ENST00000477605 RCAN1P53805 252 aa20.84■□□□□ 0.93
CCM2-209ENST00000477605 MAP3K12Q12852 859 aa20.84■□□□□ 0.93
CCM2-209ENST00000477605 SYNE4Q8N205 404 aa20.84■□□□□ 0.93
CCM2-209ENST00000477605 FAM217BQ9NTX9 383 aaPredicted RBP20.84■□□□□ 0.93
CCM2-209ENST00000477605 SLC12A7Q9Y666 1083 aa20.84■□□□□ 0.93
CCM2-209ENST00000477605 BRWD3Q6RI45 1802 aa20.84■□□□□ 0.93
CCM2-209ENST00000477605 FAM98CQ17RN3 349 aaKnown RBP20.84■□□□□ 0.93
CCM2-209ENST00000477605 OLFM4Q6UX06 510 aa20.84■□□□□ 0.93
CCM2-209ENST00000477605 IFNL3Q8IZI9 196 aa20.84■□□□□ 0.93
CCM2-209ENST00000477605 ZNF397Q8NF99 534 aaPredicted RBP20.84■□□□□ 0.93
CCM2-209ENST00000477605 AIFM3Q96NN9 605 aa20.84■□□□□ 0.93
CCM2-209ENST00000477605 L2HGDHQ9H9P8 463 aa20.84■□□□□ 0.93
CCM2-209ENST00000477605 SLC5A1P13866 664 aa20.83■□□□□ 0.93
CCM2-209ENST00000477605 MICU3Q86XE3 530 aa20.83■□□□□ 0.93
CCM2-209ENST00000477605 PPP1R13BQ96KQ4 1090 aa20.83■□□□□ 0.93
CCM2-209ENST00000477605 NAPBQ9H115 298 aa20.83■□□□□ 0.93
CCM2-209ENST00000477605 WWC3Q9ULE0 1092 aa20.83■□□□□ 0.93
CCM2-209ENST00000477605 UBN2Q6ZU65 1347 aa20.82■□□□□ 0.92
CCM2-209ENST00000477605 SAFBQ15424 915 aaKnown RBP eCLIP20.82■□□□□ 0.92
CCM2-209ENST00000477605 KRBA2Q6ZNG9 492 aa20.82■□□□□ 0.92
CCM2-209ENST00000477605 TMTC2Q8N394 836 aa20.82■□□□□ 0.92
CCM2-209ENST00000477605 KRI1Q8N9T8 703 aaKnown RBP20.82■□□□□ 0.92
CCM2-209ENST00000477605 SPATA5Q8NB90 893 aa20.82■□□□□ 0.92
CCM2-209ENST00000477605 PHKBQ93100 1093 aa20.82■□□□□ 0.92
CCM2-209ENST00000477605 ZNF215Q9UL58 517 aaPredicted RBP20.82■□□□□ 0.92
CCM2-209ENST00000477605 DENND2AQ9ULE3 1009 aa20.82■□□□□ 0.92
CCM2-209ENST00000477605 LRP5O75197 1615 aa20.82■□□□□ 0.92
CCM2-209ENST00000477605 SPATA31A1Q5TZJ5 1347 aa20.82■□□□□ 0.92
CCM2-209ENST00000477605 IFIT3O14879 490 aaKnown RBP20.82■□□□□ 0.92
CCM2-209ENST00000477605 RANBP6O60518 1105 aaKnown RBP20.82■□□□□ 0.92
CCM2-209ENST00000477605 AKNAD1Q5T1N1 836 aa20.82■□□□□ 0.92
CCM2-209ENST00000477605 FCHSD1Q86WN1 690 aa20.82■□□□□ 0.92
CCM2-209ENST00000477605 HSD3B7Q9H2F3 369 aa20.82■□□□□ 0.92
CCM2-209ENST00000477605 DDX41Q9UJV9 622 aaKnown RBP20.82■□□□□ 0.92
CCM2-209ENST00000477605 KCNH3Q9ULD8 1083 aa20.82■□□□□ 0.92
CCM2-209ENST00000477605 LMOD1P29536 600 aaPredicted RBP20.81■□□□□ 0.92
CCM2-209ENST00000477605 IL6STP40189 918 aaPredicted RBP20.81■□□□□ 0.92
CCM2-209ENST00000477605 NOSTRINQ8IVI9 506 aa20.81■□□□□ 0.92
CCM2-209ENST00000477605 ZNF34Q8IZ26 560 aa20.81■□□□□ 0.92
CCM2-209ENST00000477605 UBASH3AP57075 661 aa20.81■□□□□ 0.92
CCM2-209ENST00000477605 SART3Q15020 963 aaKnown RBP20.81■□□□□ 0.92
CCM2-209ENST00000477605 CNNM3Q8NE01 707 aa20.81■□□□□ 0.92
CCM2-209ENST00000477605 NACAP1Q9BZK3 213 aa20.81■□□□□ 0.92
CCM2-209ENST00000477605 FOXP1Q9H334 677 aaPredicted RBP20.81■□□□□ 0.92
CCM2-209ENST00000477605 ZSWIM5Q9P217 1185 aa20.81■□□□□ 0.92
CCM2-209ENST00000477605 MORC2Q9Y6X9 1032 aaPredicted RBP20.81■□□□□ 0.92
CCM2-209ENST00000477605 BCL9O00512 1426 aa20.8■□□□□ 0.92
CCM2-209ENST00000477605 PNPLA7Q6ZV29 1317 aa20.8■□□□□ 0.92
CCM2-209ENST00000477605 CCDC196A0A1B0GTZ2 297 aa20.8■□□□□ 0.92
CCM2-209ENST00000477605 TRIM22Q8IYM9 498 aa20.8■□□□□ 0.92
CCM2-209ENST00000477605 NKX2-3Q8TAU0 364 aa20.8■□□□□ 0.92
CCM2-209ENST00000477605 STAG1Q8WVM7 1258 aa20.8■□□□□ 0.92
CCM2-209ENST00000477605 TMX1Q9H3N1 280 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms