RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 USP17L12C9JPN9 530 aa12.77□□□□□ -0.37
MSX1-202ENST00000468421 USP17L21D6R901 530 aa12.77□□□□□ -0.37
MSX1-202ENST00000468421 RPS12P25398 132 aaKnown RBP12.77□□□□□ -0.37
MSX1-202ENST00000468421 GMPSP49915 693 aaPredicted RBP12.77□□□□□ -0.37
MSX1-202ENST00000468421 NEK4P51957 841 aa12.77□□□□□ -0.37
MSX1-202ENST00000468421 PPARAQ07869 468 aa12.77□□□□□ -0.37
MSX1-202ENST00000468421 KRT32Q14532 448 aa12.77□□□□□ -0.37
MSX1-202ENST00000468421 SLC4A8Q2Y0W8 1093 aa12.77□□□□□ -0.37
MSX1-202ENST00000468421 C9orf131Q5VYM1 1079 aa12.77□□□□□ -0.37
MSX1-202ENST00000468421 PRMT6Q96LA8 375 aaPredicted RBP12.77□□□□□ -0.37
MSX1-202ENST00000468421 TTC14Q96N46 770 aa12.77□□□□□ -0.37
MSX1-202ENST00000468421 NEK1Q96PY6 1258 aa12.77□□□□□ -0.37
MSX1-202ENST00000468421 TBC1D2Q9BYX2 928 aa12.77□□□□□ -0.37
MSX1-202ENST00000468421 INCENPQ9NQS7 918 aa12.77□□□□□ -0.37
MSX1-202ENST00000468421 NEDD4P46934 1319 aa12.77□□□□□ -0.37
MSX1-202ENST00000468421 SPDYE2BA6NHP3 402 aa12.76□□□□□ -0.37
MSX1-202ENST00000468421 SPDYE6P0CI01 402 aa12.76□□□□□ -0.37
MSX1-202ENST00000468421 PSMA5P28066 241 aa12.76□□□□□ -0.37
MSX1-202ENST00000468421 CACNB3P54284 484 aa12.76□□□□□ -0.37
MSX1-202ENST00000468421 NFIAQ12857 509 aa12.76□□□□□ -0.37
MSX1-202ENST00000468421 PICALMQ13492 652 aa12.76□□□□□ -0.37
MSX1-202ENST00000468421 SBK1Q52WX2 424 aa12.76□□□□□ -0.37
MSX1-202ENST00000468421 BLOC1S2Q6QNY1 142 aa12.76□□□□□ -0.37
MSX1-202ENST00000468421 RUFY3Q7L099 469 aa12.76□□□□□ -0.37
MSX1-202ENST00000468421 MB21D2Q8IYB1 491 aaPredicted RBP12.76□□□□□ -0.37
MSX1-202ENST00000468421 STK11IPQ8N1F8 1099 aa12.76□□□□□ -0.37
MSX1-202ENST00000468421 SNX21Q969T3 373 aa12.76□□□□□ -0.37
MSX1-202ENST00000468421 DDRGK1Q96HY6 314 aa12.76□□□□□ -0.37
MSX1-202ENST00000468421 ZBED3Q96IU2 234 aaPredicted RBP12.76□□□□□ -0.37
MSX1-202ENST00000468421 TCEANC2Q96MN5 208 aa12.76□□□□□ -0.37
MSX1-202ENST00000468421 TDRD3Q9H7E2 651 aaKnown RBP12.76□□□□□ -0.37
MSX1-202ENST00000468421 MCM9Q9NXL9 1143 aa12.76□□□□□ -0.37
MSX1-202ENST00000468421 ARPP21Q9UBL0 812 aaPredicted RBP12.76□□□□□ -0.37
MSX1-202ENST00000468421 SAP30BPQ9UHR5 308 aaKnown RBP12.76□□□□□ -0.37
MSX1-202ENST00000468421 ANAPC4Q9UJX5 808 aa12.76□□□□□ -0.37
MSX1-202ENST00000468421 EGFRP00533 1210 aa12.75□□□□□ -0.37
MSX1-202ENST00000468421 RPS6KB1P23443 525 aa12.75□□□□□ -0.37
MSX1-202ENST00000468421 ZNF280AP59817 542 aaPredicted RBP12.75□□□□□ -0.37
MSX1-202ENST00000468421 DLGAP5Q15398 846 aa12.75□□□□□ -0.37
MSX1-202ENST00000468421 AKNAD1Q5T1N1 836 aa12.75□□□□□ -0.37
MSX1-202ENST00000468421 C12orf60Q5U649 245 aa12.75□□□□□ -0.37
MSX1-202ENST00000468421 MICALL2Q8IY33 904 aa12.75□□□□□ -0.37
MSX1-202ENST00000468421 OGFOD1Q8N543 542 aa12.75□□□□□ -0.37
MSX1-202ENST00000468421 MTMR14Q8NCE2 650 aa12.75□□□□□ -0.37
MSX1-202ENST00000468421 STAG1Q8WVM7 1258 aa12.75□□□□□ -0.37
MSX1-202ENST00000468421 DPF2Q92785 391 aa12.75□□□□□ -0.37
MSX1-202ENST00000468421 ROBO3Q96MS0 1386 aa12.75□□□□□ -0.37
MSX1-202ENST00000468421 IPO9Q96P70 1041 aaKnown RBP12.75□□□□□ -0.37
MSX1-202ENST00000468421 FAM198AQ9UFP1 575 aa12.75□□□□□ -0.37
MSX1-202ENST00000468421 CYP46A1Q9Y6A2 500 aa12.75□□□□□ -0.37
MSX1-202ENST00000468421 CLRN2A0PK11 232 aa12.74□□□□□ -0.37
MSX1-202ENST00000468421 B4E1Z4 1266 aa12.74□□□□□ -0.37
MSX1-202ENST00000468421 ST18O60284 1047 aa12.74□□□□□ -0.37
MSX1-202ENST00000468421 SLC4A3P48751 1232 aa12.74□□□□□ -0.37
MSX1-202ENST00000468421 PLCD1P51178 756 aa12.74□□□□□ -0.37
MSX1-202ENST00000468421 AK2P54819 239 aa12.74□□□□□ -0.37
MSX1-202ENST00000468421 ZFPM1Q8IX07 1006 aa12.74□□□□□ -0.37
MSX1-202ENST00000468421 IDI2Q9BXS1 227 aa12.74□□□□□ -0.37
MSX1-202ENST00000468421 OSBPL5Q9H0X9 879 aaPredicted RBP12.74□□□□□ -0.37
MSX1-202ENST00000468421 MYOZ2Q9NPC6 264 aa12.74□□□□□ -0.37
MSX1-202ENST00000468421 PDRG1Q9NUG6 133 aa12.74□□□□□ -0.37
MSX1-202ENST00000468421 WNT10BO00744 389 aa12.73□□□□□ -0.37
MSX1-202ENST00000468421 GRIN3BO60391 1043 aa12.73□□□□□ -0.37
MSX1-202ENST00000468421 DDNO94850 711 aaPredicted RBP12.73□□□□□ -0.37
MSX1-202ENST00000468421 ANTXR2P58335 489 aa12.73□□□□□ -0.37
MSX1-202ENST00000468421 EXOSC10Q01780 885 aaKnown RBP12.73□□□□□ -0.37
MSX1-202ENST00000468421 SPDYE2Q495Y8 402 aa12.73□□□□□ -0.37
MSX1-202ENST00000468421 NOL8Q76FK4 1167 aaKnown RBP12.73□□□□□ -0.37
MSX1-202ENST00000468421 CYB5R4Q7L1T6 521 aa12.73□□□□□ -0.37
MSX1-202ENST00000468421 CHST3Q7LGC8 479 aa12.73□□□□□ -0.37
MSX1-202ENST00000468421 HSCBQ8IWL3 235 aa12.73□□□□□ -0.37
MSX1-202ENST00000468421 GPC2Q8N158 579 aa12.73□□□□□ -0.37
MSX1-202ENST00000468421 NCOA7Q8NI08 942 aa12.73□□□□□ -0.37
MSX1-202ENST00000468421 DYNLL2Q96FJ2 89 aa12.73□□□□□ -0.37
MSX1-202ENST00000468421 LRRC2Q9BYS8 371 aa12.73□□□□□ -0.37
MSX1-202ENST00000468421 ZNF70Q9UC06 446 aaPredicted RBP12.73□□□□□ -0.37
MSX1-202ENST00000468421 CNOT7Q9UIV1 285 aaKnown RBP12.73□□□□□ -0.37
MSX1-202ENST00000468421 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.73□□□□□ -0.37
MSX1-202ENST00000468421 COL2A1P02458 1487 aaPredicted RBP12.72□□□□□ -0.37
MSX1-202ENST00000468421 POLR3DP05423 398 aaPredicted RBP12.72□□□□□ -0.37
MSX1-202ENST00000468421 FGRP09769 529 aa12.72□□□□□ -0.37
MSX1-202ENST00000468421 TCP10Q12799 353 aa12.72□□□□□ -0.37
MSX1-202ENST00000468421 TOB2Q14106 344 aaPredicted RBP12.72□□□□□ -0.37
MSX1-202ENST00000468421 BECN1Q14457 450 aa12.72□□□□□ -0.37
MSX1-202ENST00000468421 NBPF9Q3BBW0 867 aa12.72□□□□□ -0.37
MSX1-202ENST00000468421 RRP12Q5JTH9 1297 aaKnown RBP12.72□□□□□ -0.37
MSX1-202ENST00000468421 RBM26Q5T8P6 1007 aaKnown RBP12.72□□□□□ -0.37
MSX1-202ENST00000468421 MFSD6Q6ZSS7 791 aa12.72□□□□□ -0.37
MSX1-202ENST00000468421 DHX32Q7L7V1 743 aaKnown RBP12.72□□□□□ -0.37
MSX1-202ENST00000468421 SH3BP5LQ7L8J4 393 aa12.72□□□□□ -0.37
MSX1-202ENST00000468421 SAMD7Q7Z3H4 446 aa12.72□□□□□ -0.37
MSX1-202ENST00000468421 RALYLQ86SE5 291 aaKnown RBP12.72□□□□□ -0.37
MSX1-202ENST00000468421 SLC44A5Q8NCS7 719 aa12.72□□□□□ -0.37
MSX1-202ENST00000468421 LARP6Q9BRS8 491 aaKnown RBP12.72□□□□□ -0.37
MSX1-202ENST00000468421 GREB1LQ9C091 1923 aaPredicted RBP12.72□□□□□ -0.37
MSX1-202ENST00000468421 CNTNAP1P78357 1384 aa12.71□□□□□ -0.37
MSX1-202ENST00000468421 ASTN2O75129 1339 aaPredicted RBP12.71□□□□□ -0.37
MSX1-202ENST00000468421 TCP10L2B9ZVM9 353 aa12.71□□□□□ -0.37
MSX1-202ENST00000468421 K7ELQ4 463 aaPredicted RBP12.71□□□□□ -0.37
MSX1-202ENST00000468421 KDM4AO75164 1064 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms