RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 SSH2Q76I76 1423 aa10.3□□□□□ -0.76
USP54-208ENST00000461520 CAMTA1Q9Y6Y1 1673 aa10.29□□□□□ -0.76
USP54-208ENST00000461520 MMP20O60882 483 aa10.29□□□□□ -0.76
USP54-208ENST00000461520 TRIP4Q15650 581 aaPredicted RBP10.29□□□□□ -0.76
USP54-208ENST00000461520 EZH2Q15910 746 aaKnown RBP10.29□□□□□ -0.76
USP54-208ENST00000461520 ELMSAN1Q6PJG2 1045 aa10.29□□□□□ -0.76
USP54-208ENST00000461520 SEPT3Q9UH03 358 aa10.29□□□□□ -0.76
USP54-208ENST00000461520 THRAP3Q9Y2W1 955 aaKnown RBP10.29□□□□□ -0.76
USP54-208ENST00000461520 DISP2A7MBM2 1401 aa10.29□□□□□ -0.76
USP54-208ENST00000461520 LMO7Q8WWI1 1683 aa10.28□□□□□ -0.76
USP54-208ENST00000461520 J3QW42 95 aa10.28□□□□□ -0.76
USP54-208ENST00000461520 ZBTB39O15060 712 aa10.28□□□□□ -0.76
USP54-208ENST00000461520 GRIK5Q16478 980 aa10.28□□□□□ -0.76
USP54-208ENST00000461520 FAM196AQ6ZSG2 479 aa10.28□□□□□ -0.76
USP54-208ENST00000461520 USP35Q9P2H5 1018 aa10.28□□□□□ -0.76
USP54-208ENST00000461520 SLIT3O75094 1523 aa10.28□□□□□ -0.76
USP54-208ENST00000461520 SBNO2Q9Y2G9 1366 aa10.27□□□□□ -0.76
USP54-208ENST00000461520 TRIM37O94972 964 aa10.27□□□□□ -0.77
USP54-208ENST00000461520 SCNN1AP37088 669 aa10.27□□□□□ -0.77
USP54-208ENST00000461520 NRLP54845 237 aa10.27□□□□□ -0.77
USP54-208ENST00000461520 TCP11L2Q8N4U5 519 aa10.27□□□□□ -0.77
USP54-208ENST00000461520 FRRS1LQ9P0K9 344 aa10.27□□□□□ -0.77
USP54-208ENST00000461520 STIM2Q9P246 746 aa10.27□□□□□ -0.77
USP54-208ENST00000461520 AATKQ6ZMQ8 1374 aa10.26□□□□□ -0.77
USP54-208ENST00000461520 RREB1Q92766 1687 aa10.26□□□□□ -0.77
USP54-208ENST00000461520 COL5A2P05997 1499 aaPredicted RBP10.26□□□□□ -0.77
USP54-208ENST00000461520 PSAPP07602 524 aa10.26□□□□□ -0.77
USP54-208ENST00000461520 EIF2AK2P19525 551 aaKnown RBP10.26□□□□□ -0.77
USP54-208ENST00000461520 ARID4AP29374 1257 aaPredicted RBP10.26□□□□□ -0.77
USP54-208ENST00000461520 ZAP70P43403 619 aa10.26□□□□□ -0.77
USP54-208ENST00000461520 RAC1P63000 192 aa10.26□□□□□ -0.77
USP54-208ENST00000461520 PDE3BQ13370 1112 aa10.26□□□□□ -0.77
USP54-208ENST00000461520 NSUN5Q96P11 429 aaKnown RBP10.26□□□□□ -0.77
USP54-208ENST00000461520 CAMKK2Q96RR4 588 aa10.26□□□□□ -0.77
USP54-208ENST00000461520 CARD11Q9BXL7 1154 aa10.26□□□□□ -0.77
USP54-208ENST00000461520 SMG9Q9H0W8 520 aaKnown RBP10.26□□□□□ -0.77
USP54-208ENST00000461520 NUP188Q5SRE5 1749 aa10.26□□□□□ -0.77
USP54-208ENST00000461520 TTC21BQ7Z4L5 1316 aa10.26□□□□□ -0.77
USP54-208ENST00000461520 TTC21AQ8NDW8 1320 aa10.26□□□□□ -0.77
USP54-208ENST00000461520 CRB1P82279 1406 aa10.25□□□□□ -0.77
USP54-208ENST00000461520 CPSF1Q10570 1443 aaKnown RBP10.25□□□□□ -0.77
USP54-208ENST00000461520 ELNP15502 786 aa10.25□□□□□ -0.77
USP54-208ENST00000461520 SELPP16109 830 aa10.25□□□□□ -0.77
USP54-208ENST00000461520 MSL1Q68DK7 614 aa10.25□□□□□ -0.77
USP54-208ENST00000461520 SHISA2Q6UWI4 295 aa10.25□□□□□ -0.77
USP54-208ENST00000461520 KCNH5Q8NCM2 988 aa10.25□□□□□ -0.77
USP54-208ENST00000461520 GPR152Q8TDT2 470 aa10.25□□□□□ -0.77
USP54-208ENST00000461520 PIK3R5Q8WYR1 880 aa10.25□□□□□ -0.77
USP54-208ENST00000461520 NACC1Q96RE7 527 aa10.25□□□□□ -0.77
USP54-208ENST00000461520 TONSLQ96HA7 1378 aa10.25□□□□□ -0.77
USP54-208ENST00000461520 PIK3C2AO00443 1686 aa10.25□□□□□ -0.77
USP54-208ENST00000461520 LOC102724428A0A0B4J2F2 783 aa10.24□□□□□ -0.77
USP54-208ENST00000461520 SIK1P57059 783 aa10.24□□□□□ -0.77
USP54-208ENST00000461520 KTN1Q86UP2 1357 aaKnown RBP10.24□□□□□ -0.77
USP54-208ENST00000461520 ZBTB7CA1YPR0 619 aa10.23□□□□□ -0.77
USP54-208ENST00000461520 ARHGEF25Q86VW2 580 aa10.23□□□□□ -0.77
USP54-208ENST00000461520 FMR1NBQ8N0W7 255 aaPredicted RBP10.23□□□□□ -0.77
USP54-208ENST00000461520 TPSG1Q9NRR2 321 aa10.23□□□□□ -0.77
USP54-208ENST00000461520 PARD3Q8TEW0 1356 aa10.23□□□□□ -0.77
USP54-208ENST00000461520 AKAP12Q02952 1782 aa10.22□□□□□ -0.77
USP54-208ENST00000461520 C9orf172C9J069 976 aa10.22□□□□□ -0.77
USP54-208ENST00000461520 TOM1L2Q6ZVM7 507 aa10.22□□□□□ -0.77
USP54-208ENST00000461520 WFDC8Q8IUA0 241 aa10.22□□□□□ -0.77
USP54-208ENST00000461520 TTC9Q92623 222 aa10.22□□□□□ -0.77
USP54-208ENST00000461520 PLD4Q96BZ4 506 aa10.22□□□□□ -0.77
USP54-208ENST00000461520 PUS7Q96PZ0 661 aaKnown RBP10.22□□□□□ -0.77
USP54-208ENST00000461520 SEMA6BQ9H3T3 888 aa10.22□□□□□ -0.77
USP54-208ENST00000461520 FAM13BQ9NYF5 915 aa10.22□□□□□ -0.77
USP54-208ENST00000461520 WDR17Q8IZU2 1322 aa10.22□□□□□ -0.77
USP54-208ENST00000461520 TRIM26Q12899 539 aaPredicted RBP10.21□□□□□ -0.77
USP54-208ENST00000461520 ATCAYQ86WG3 371 aa10.21□□□□□ -0.77
USP54-208ENST00000461520 USP31Q70CQ4 1352 aa10.21□□□□□ -0.78
USP54-208ENST00000461520 PARP4Q9UKK3 1724 aaKnown RBP10.21□□□□□ -0.78
USP54-208ENST00000461520 CARNS1A5YM72 827 aa10.2□□□□□ -0.78
USP54-208ENST00000461520 TMEM88BA6NKF7 163 aa10.2□□□□□ -0.78
USP54-208ENST00000461520 GHRHP01286 108 aa10.2□□□□□ -0.78
USP54-208ENST00000461520 COL18A1P39060 1754 aa10.2□□□□□ -0.78
USP54-208ENST00000461520 MBTPS1Q14703 1052 aa10.2□□□□□ -0.78
USP54-208ENST00000461520 DDB1Q16531 1140 aa10.2□□□□□ -0.78
USP54-208ENST00000461520 HDGFL2Q7Z4V5 671 aaPredicted RBP10.2□□□□□ -0.78
USP54-208ENST00000461520 TMC1Q8TDI8 760 aa10.2□□□□□ -0.78
USP54-208ENST00000461520 LENG1Q96BZ8 264 aaPredicted RBP10.2□□□□□ -0.78
USP54-208ENST00000461520 MON2Q7Z3U7 1717 aa10.19□□□□□ -0.78
USP54-208ENST00000461520 NFAT5O94916 1531 aa10.19□□□□□ -0.78
USP54-208ENST00000461520 ABCC6O95255 1503 aa10.19□□□□□ -0.78
USP54-208ENST00000461520 CD163L1Q9NR16 1453 aa10.19□□□□□ -0.78
USP54-208ENST00000461520 OVOS2A0A0G2JMS6 1433 aa10.19□□□□□ -0.78
USP54-208ENST00000461520 OVOS2A0A0J9YW53 1432 aa10.19□□□□□ -0.78
USP54-208ENST00000461520 OVOS2Q6IE36 1432 aa10.19□□□□□ -0.78
USP54-208ENST00000461520 YY1P25490 414 aa10.19□□□□□ -0.78
USP54-208ENST00000461520 ITGB7P26010 798 aa10.19□□□□□ -0.78
USP54-208ENST00000461520 SOX18P35713 384 aa10.19□□□□□ -0.78
USP54-208ENST00000461520 ADGRE1Q14246 886 aa10.19□□□□□ -0.78
USP54-208ENST00000461520 COL13A1Q5TAT6 717 aaPredicted RBP10.19□□□□□ -0.78
USP54-208ENST00000461520 GDF6Q6KF10 455 aaPredicted RBP10.19□□□□□ -0.78
USP54-208ENST00000461520 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.19□□□□□ -0.78
USP54-208ENST00000461520 CARD10Q9BWT7 1032 aa10.19□□□□□ -0.78
USP54-208ENST00000461520 TERF2IPQ9NYB0 399 aa10.19□□□□□ -0.78
USP54-208ENST00000461520 FNDC3AQ9Y2H6 1198 aaKnown RBP10.19□□□□□ -0.78
USP54-208ENST00000461520 HOXD8P13378 290 aaPredicted RBP10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms