RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 PARP10Q53GL7 1025 aa13.31□□□□□ -0.28
NPHP4-204ENST00000460696 STOX1Q6ZVD7 989 aa13.31□□□□□ -0.28
NPHP4-204ENST00000460696 ZSCAN29Q8IWY8 852 aaPredicted RBP13.31□□□□□ -0.28
NPHP4-204ENST00000460696 TTLL11Q8NHH1 800 aa13.31□□□□□ -0.28
NPHP4-204ENST00000460696 PDLIM2Q96JY6 352 aa13.31□□□□□ -0.28
NPHP4-204ENST00000460696 MROH5Q6ZUA9 1318 aa13.31□□□□□ -0.28
NPHP4-204ENST00000460696 GPS2Q13227 327 aa13.31□□□□□ -0.28
NPHP4-204ENST00000460696 SCARF1Q14162 830 aa13.31□□□□□ -0.28
NPHP4-204ENST00000460696 CARMIL3Q8ND23 1372 aa13.31□□□□□ -0.28
NPHP4-204ENST00000460696 PXDNLA1KZ92 1463 aa13.31□□□□□ -0.28
NPHP4-204ENST00000460696 PATL2C9JE40 543 aaKnown RBP13.31□□□□□ -0.28
NPHP4-204ENST00000460696 POLR2DO15514 142 aaKnown RBP13.31□□□□□ -0.28
NPHP4-204ENST00000460696 YEATS4O95619 227 aa13.31□□□□□ -0.28
NPHP4-204ENST00000460696 MMP10P09238 476 aa13.31□□□□□ -0.28
NPHP4-204ENST00000460696 KIF5BP33176 963 aa13.31□□□□□ -0.28
NPHP4-204ENST00000460696 UBA7P41226 1012 aa13.31□□□□□ -0.28
NPHP4-204ENST00000460696 RABL6Q3YEC7 729 aaPredicted RBP13.31□□□□□ -0.28
NPHP4-204ENST00000460696 ATG9AQ7Z3C6 839 aa13.31□□□□□ -0.28
NPHP4-204ENST00000460696 PGBD1Q96JS3 809 aa13.31□□□□□ -0.28
NPHP4-204ENST00000460696 PFKFB1P16118 471 aa13.3□□□□□ -0.28
NPHP4-204ENST00000460696 EIF5P55010 431 aaKnown RBP13.3□□□□□ -0.28
NPHP4-204ENST00000460696 PTF1AQ7RTS3 328 aa13.3□□□□□ -0.28
NPHP4-204ENST00000460696 ZSWIM4Q9H7M6 989 aa13.3□□□□□ -0.28
NPHP4-204ENST00000460696 KIAA1468Q9P260 1216 aa13.3□□□□□ -0.28
NPHP4-204ENST00000460696 FBXO3Q9UK99 471 aa13.3□□□□□ -0.28
NPHP4-204ENST00000460696 GNG11P61952 73 aa13.3□□□□□ -0.28
NPHP4-204ENST00000460696 MYL5Q02045 173 aa13.3□□□□□ -0.28
NPHP4-204ENST00000460696 ZNF174Q15697 407 aa13.3□□□□□ -0.28
NPHP4-204ENST00000460696 CLIC6Q96NY7 704 aa13.3□□□□□ -0.28
NPHP4-204ENST00000460696 BTBD18B2RXH4 712 aa13.3□□□□□ -0.28
NPHP4-204ENST00000460696 MCAMP43121 646 aa13.3□□□□□ -0.28
NPHP4-204ENST00000460696 TTLL12Q14166 644 aaPredicted RBP13.3□□□□□ -0.28
NPHP4-204ENST00000460696 TEX35Q5T0J7 233 aa13.3□□□□□ -0.28
NPHP4-204ENST00000460696 KANK3Q6NY19 840 aa13.3□□□□□ -0.28
NPHP4-204ENST00000460696 CAGE1Q8TC20 777 aa13.3□□□□□ -0.28
NPHP4-204ENST00000460696 ATG3Q9NT62 314 aa13.3□□□□□ -0.28
NPHP4-204ENST00000460696 ZNHIT6Q9NWK9 470 aaKnown RBP13.3□□□□□ -0.28
NPHP4-204ENST00000460696 RCOR1Q9UKL0 485 aa13.3□□□□□ -0.28
NPHP4-204ENST00000460696 MPHOSPH10O00566 681 aaKnown RBP13.3□□□□□ -0.28
NPHP4-204ENST00000460696 C11orf57Q6ZUT1 292 aaPredicted RBP13.3□□□□□ -0.28
NPHP4-204ENST00000460696 SEC63Q9UGP8 760 aaKnown RBP13.3□□□□□ -0.28
NPHP4-204ENST00000460696 SPATA31A5Q5VU36 1347 aa13.29□□□□□ -0.28
NPHP4-204ENST00000460696 SPATA31A7Q8IWB4 1347 aa13.29□□□□□ -0.28
NPHP4-204ENST00000460696 PRKAB2O43741 272 aa13.29□□□□□ -0.28
NPHP4-204ENST00000460696 BAG3O95817 575 aa13.29□□□□□ -0.28
NPHP4-204ENST00000460696 KRT18P05783 430 aaKnown RBP13.29□□□□□ -0.28
NPHP4-204ENST00000460696 PDE4CQ08493 712 aa13.29□□□□□ -0.28
NPHP4-204ENST00000460696 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.29□□□□□ -0.28
NPHP4-204ENST00000460696 MYRIPQ8NFW9 859 aa13.29□□□□□ -0.28
NPHP4-204ENST00000460696 TANGO6Q9C0B7 1094 aa13.29□□□□□ -0.28
NPHP4-204ENST00000460696 INCENPQ9NQS7 918 aa13.29□□□□□ -0.28
NPHP4-204ENST00000460696 AATFQ9NY61 560 aaKnown RBP eCLIP13.29□□□□□ -0.28
NPHP4-204ENST00000460696 PALLDQ8WX93 1383 aa13.29□□□□□ -0.28
NPHP4-204ENST00000460696 HMGB2P26583 209 aaKnown RBP13.29□□□□□ -0.28
NPHP4-204ENST00000460696 ADD2P35612 726 aa13.29□□□□□ -0.28
NPHP4-204ENST00000460696 PIH1D3Q9NQM4 214 aaKnown RBP13.29□□□□□ -0.28
NPHP4-204ENST00000460696 A0A0G2JLW4 131 aa13.29□□□□□ -0.28
NPHP4-204ENST00000460696 VWA3AA6NCI4 1184 aa13.29□□□□□ -0.28
NPHP4-204ENST00000460696 N4BP3O15049 544 aa13.29□□□□□ -0.28
NPHP4-204ENST00000460696 DEXIO95424 95 aa13.29□□□□□ -0.28
NPHP4-204ENST00000460696 TSPY3P0CV98 308 aa13.29□□□□□ -0.28
NPHP4-204ENST00000460696 TSPY8P0CW00 308 aa13.29□□□□□ -0.28
NPHP4-204ENST00000460696 MCM7P33993 719 aa13.29□□□□□ -0.28
NPHP4-204ENST00000460696 RFX5P48382 616 aaPredicted RBP13.29□□□□□ -0.28
NPHP4-204ENST00000460696 PNOCQ13519 176 aa13.29□□□□□ -0.28
NPHP4-204ENST00000460696 RILPL1Q5EBL4 403 aa13.29□□□□□ -0.28
NPHP4-204ENST00000460696 APOA5Q6Q788 366 aa13.29□□□□□ -0.28
NPHP4-204ENST00000460696 SYT10Q6XYQ8 523 aa13.29□□□□□ -0.28
NPHP4-204ENST00000460696 NUP88Q99567 741 aaPredicted RBP13.29□□□□□ -0.28
NPHP4-204ENST00000460696 XPO4Q9C0E2 1151 aaKnown RBP13.29□□□□□ -0.28
NPHP4-204ENST00000460696 ZNF287Q9HBT7 754 aa13.29□□□□□ -0.28
NPHP4-204ENST00000460696 VPS54Q9P1Q0 977 aa13.29□□□□□ -0.28
NPHP4-204ENST00000460696 THRAP3Q9Y2W1 955 aaKnown RBP13.29□□□□□ -0.28
NPHP4-204ENST00000460696 PXDNQ92626 1479 aa13.28□□□□□ -0.28
NPHP4-204ENST00000460696 FANCCQ00597 558 aa13.28□□□□□ -0.28
NPHP4-204ENST00000460696 UBE3CQ15386 1083 aa13.28□□□□□ -0.28
NPHP4-204ENST00000460696 KIF4BQ2VIQ3 1234 aa13.28□□□□□ -0.28
NPHP4-204ENST00000460696 NOC3LQ8WTT2 800 aaKnown RBP13.28□□□□□ -0.28
NPHP4-204ENST00000460696 STAMQ92783 540 aa13.28□□□□□ -0.28
NPHP4-204ENST00000460696 KRT2P35908 639 aa13.28□□□□□ -0.28
NPHP4-204ENST00000460696 EPS15P42566 896 aa13.28□□□□□ -0.28
NPHP4-204ENST00000460696 RRAGBQ5VZM2 374 aa13.28□□□□□ -0.28
NPHP4-204ENST00000460696 CCDC70Q6NSX1 233 aa13.28□□□□□ -0.28
NPHP4-204ENST00000460696 HEATR3Q7Z4Q2 680 aa13.28□□□□□ -0.28
NPHP4-204ENST00000460696 ZNF609O15014 1411 aa13.28□□□□□ -0.28
NPHP4-204ENST00000460696 SPTY2D1Q68D10 685 aaPredicted RBP13.28□□□□□ -0.28
NPHP4-204ENST00000460696 PLIN2Q99541 437 aa13.28□□□□□ -0.28
NPHP4-204ENST00000460696 LDHCP07864 332 aa13.27□□□□□ -0.28
NPHP4-204ENST00000460696 ZNF654Q8IZM8 581 aa13.27□□□□□ -0.28
NPHP4-204ENST00000460696 ZNF408Q9H9D4 720 aa13.27□□□□□ -0.28
NPHP4-204ENST00000460696 ANKRD26Q9UPS8 1709 aa13.27□□□□□ -0.28
NPHP4-204ENST00000460696 CASQ1P31415 396 aa13.27□□□□□ -0.29
NPHP4-204ENST00000460696 CHRNDQ07001 517 aa13.27□□□□□ -0.29
NPHP4-204ENST00000460696 RTEL1Q9NZ71 1219 aa13.27□□□□□ -0.29
NPHP4-204ENST00000460696 USP17L12C9JPN9 530 aa13.27□□□□□ -0.29
NPHP4-204ENST00000460696 USP17L21D6R901 530 aa13.27□□□□□ -0.29
NPHP4-204ENST00000460696 H0YIN7 160 aa13.27□□□□□ -0.29
NPHP4-204ENST00000460696 HIBADHP31937 336 aaKnown RBP13.27□□□□□ -0.29
NPHP4-204ENST00000460696 IL6STP40189 918 aaPredicted RBP13.27□□□□□ -0.29
NPHP4-204ENST00000460696 NLRP12P59046 1061 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms