RNA–Protein interactions for RNA: ENST00000446690.2

COL6A4P1-201, Transcript of collagen type VI alpha 4 pseudogene 1, humanhuman

TSL 2 BASIC

Gene COL6A4P1, Length 2,336 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A4P1-201ENST00000446690 CAMK4Q16566 473 aa11.12□□□□□ -0.63
COL6A4P1-201ENST00000446690 GIMAP6Q6P9H5 292 aa11.12□□□□□ -0.63
COL6A4P1-201ENST00000446690 CTR9Q6PD62 1173 aa11.12□□□□□ -0.63
COL6A4P1-201ENST00000446690 COL23A1Q86Y22 540 aaPredicted RBP11.12□□□□□ -0.63
COL6A4P1-201ENST00000446690 BICD2Q8TD16 824 aa11.12□□□□□ -0.63
COL6A4P1-201ENST00000446690 ESR2Q92731 530 aa11.12□□□□□ -0.63
COL6A4P1-201ENST00000446690 AIFM3Q96NN9 605 aa11.12□□□□□ -0.63
COL6A4P1-201ENST00000446690 CRNKL1Q9BZJ0 848 aaKnown RBP11.12□□□□□ -0.63
COL6A4P1-201ENST00000446690 RRAGDQ9NQL2 400 aaPredicted RBP11.12□□□□□ -0.63
COL6A4P1-201ENST00000446690 GGA1Q9UJY5 639 aa11.12□□□□□ -0.63
COL6A4P1-201ENST00000446690 DOCK2Q92608 1830 aa11.11□□□□□ -0.63
COL6A4P1-201ENST00000446690 C6orf229H3BNL8 230 aa11.11□□□□□ -0.63
COL6A4P1-201ENST00000446690 BBOX1O75936 387 aa11.11□□□□□ -0.63
COL6A4P1-201ENST00000446690 LETM1O95202 739 aaPredicted RBP11.11□□□□□ -0.63
COL6A4P1-201ENST00000446690 SGMS1Q86VZ5 419 aa11.11□□□□□ -0.63
COL6A4P1-201ENST00000446690 CCDC82Q8N4S0 544 aa11.11□□□□□ -0.63
COL6A4P1-201ENST00000446690 WDR66Q8TBY9 1149 aa11.11□□□□□ -0.63
COL6A4P1-201ENST00000446690 NUP133Q8WUM0 1156 aa11.11□□□□□ -0.63
COL6A4P1-201ENST00000446690 ZNF396Q96N95 335 aaPredicted RBP11.11□□□□□ -0.63
COL6A4P1-201ENST00000446690 ALG1Q9BT22 464 aa11.11□□□□□ -0.63
COL6A4P1-201ENST00000446690 BRIP1Q9BX63 1249 aa11.11□□□□□ -0.63
COL6A4P1-201ENST00000446690 PDS5AQ29RF7 1337 aaKnown RBP11.11□□□□□ -0.63
COL6A4P1-201ENST00000446690 IRS2Q9Y4H2 1338 aa11.11□□□□□ -0.63
COL6A4P1-201ENST00000446690 ATP2B4P23634 1241 aa11.1□□□□□ -0.63
COL6A4P1-201ENST00000446690 IARSP41252 1262 aaKnown RBP11.1□□□□□ -0.63
COL6A4P1-201ENST00000446690 EVX2Q03828 476 aa11.1□□□□□ -0.63
COL6A4P1-201ENST00000446690 FBXO18Q8NFZ0 1043 aa11.1□□□□□ -0.63
COL6A4P1-201ENST00000446690 TDRD7Q8NHU6 1098 aaKnown RBP11.1□□□□□ -0.63
COL6A4P1-201ENST00000446690 PGBD1Q96JS3 809 aa11.1□□□□□ -0.63
COL6A4P1-201ENST00000446690 PKNOX2Q96KN3 472 aa11.1□□□□□ -0.63
COL6A4P1-201ENST00000446690 CASZ1Q86V15 1759 aa11.1□□□□□ -0.63
COL6A4P1-201ENST00000446690 RXRBP28702 533 aa11.1□□□□□ -0.63
COL6A4P1-201ENST00000446690 DIXDC1Q155Q3 683 aa11.1□□□□□ -0.63
COL6A4P1-201ENST00000446690 ILDR1Q86SU0 546 aaPredicted RBP11.1□□□□□ -0.63
COL6A4P1-201ENST00000446690 CMTR1Q8N1G2 835 aaKnown RBP11.1□□□□□ -0.63
COL6A4P1-201ENST00000446690 USP28Q96RU2 1077 aa11.1□□□□□ -0.63
COL6A4P1-201ENST00000446690 SLC26A6Q9BXS9 759 aa11.1□□□□□ -0.63
COL6A4P1-201ENST00000446690 ANAPC4Q9UJX5 808 aa11.1□□□□□ -0.63
COL6A4P1-201ENST00000446690 BRWD3Q6RI45 1802 aa11.1□□□□□ -0.63
COL6A4P1-201ENST00000446690 PLSCR1O15162 318 aa11.09□□□□□ -0.63
COL6A4P1-201ENST00000446690 USP5P45974 858 aa11.09□□□□□ -0.63
COL6A4P1-201ENST00000446690 SSRP1Q08945 709 aaKnown RBP11.09□□□□□ -0.63
COL6A4P1-201ENST00000446690 GNL2Q13823 731 aaKnown RBP11.09□□□□□ -0.63
COL6A4P1-201ENST00000446690 GRIK5Q16478 980 aa11.09□□□□□ -0.63
COL6A4P1-201ENST00000446690 MSL1Q68DK7 614 aa11.09□□□□□ -0.63
COL6A4P1-201ENST00000446690 NLGN1Q8N2Q7 840 aa11.09□□□□□ -0.63
COL6A4P1-201ENST00000446690 TMTC2Q8N394 836 aa11.09□□□□□ -0.63
COL6A4P1-201ENST00000446690 TRIM44Q96DX7 344 aaPredicted RBP11.09□□□□□ -0.63
COL6A4P1-201ENST00000446690 CD209Q9NNX6 404 aa11.09□□□□□ -0.63
COL6A4P1-201ENST00000446690 DCP1AQ9NPI6 582 aaPredicted RBP11.09□□□□□ -0.63
COL6A4P1-201ENST00000446690 FAM217BQ9NTX9 383 aaPredicted RBP11.09□□□□□ -0.63
COL6A4P1-201ENST00000446690 DACT1Q9NYF0 836 aa11.09□□□□□ -0.63
COL6A4P1-201ENST00000446690 POLLQ9UGP5 575 aa11.09□□□□□ -0.63
COL6A4P1-201ENST00000446690 UBE2Q2LH0YL09 131 aa11.09□□□□□ -0.63
COL6A4P1-201ENST00000446690 RIMBP2O15034 1052 aa11.09□□□□□ -0.63
COL6A4P1-201ENST00000446690 CYP2D6P10635 497 aa11.09□□□□□ -0.63
COL6A4P1-201ENST00000446690 HMGB2P26583 209 aaKnown RBP11.09□□□□□ -0.63
COL6A4P1-201ENST00000446690 MCM9Q9NXL9 1143 aa11.09□□□□□ -0.63
COL6A4P1-201ENST00000446690 TNKSO95271 1327 aa11.09□□□□□ -0.63
COL6A4P1-201ENST00000446690 A0A1B0GUL6 1792 aa11.08□□□□□ -0.63
COL6A4P1-201ENST00000446690 PPEF1O14829 653 aaPredicted RBP11.08□□□□□ -0.64
COL6A4P1-201ENST00000446690 HOXA10P31260 410 aaPredicted RBP11.08□□□□□ -0.64
COL6A4P1-201ENST00000446690 ME1P48163 572 aa11.08□□□□□ -0.64
COL6A4P1-201ENST00000446690 TRIM29Q14134 588 aa11.08□□□□□ -0.64
COL6A4P1-201ENST00000446690 NTRK3Q16288 839 aa11.08□□□□□ -0.64
COL6A4P1-201ENST00000446690 RTN1Q16799 776 aa11.08□□□□□ -0.64
COL6A4P1-201ENST00000446690 TBC1D16Q8TBP0 767 aa11.08□□□□□ -0.64
COL6A4P1-201ENST00000446690 AKT1S1Q96B36 256 aa11.08□□□□□ -0.64
COL6A4P1-201ENST00000446690 CRAMP1Q96RY5 1269 aa11.08□□□□□ -0.64
COL6A4P1-201ENST00000446690 ZSCAN10Q96SZ4 725 aaPredicted RBP11.08□□□□□ -0.64
COL6A4P1-201ENST00000446690 NOL10Q9BSC4 688 aaKnown RBP11.08□□□□□ -0.64
COL6A4P1-201ENST00000446690 NUP62CLQ9H1M0 184 aa11.08□□□□□ -0.64
COL6A4P1-201ENST00000446690 ATP8A2Q9NTI2 1148 aa11.08□□□□□ -0.64
COL6A4P1-201ENST00000446690 UBR3Q6ZT12 1888 aa11.08□□□□□ -0.64
COL6A4P1-201ENST00000446690 NR1I2O75469 434 aa11.08□□□□□ -0.64
COL6A4P1-201ENST00000446690 SLC3A2P08195 630 aaKnown RBP11.08□□□□□ -0.64
COL6A4P1-201ENST00000446690 USP17L8P0C7I0 530 aa11.08□□□□□ -0.64
COL6A4P1-201ENST00000446690 CCDC173Q0VFZ6 552 aa11.08□□□□□ -0.64
COL6A4P1-201ENST00000446690 FAM47AQ5JRC9 791 aa11.08□□□□□ -0.64
COL6A4P1-201ENST00000446690 IQCA1Q86XH1 822 aa11.08□□□□□ -0.64
COL6A4P1-201ENST00000446690 ZNF654Q8IZM8 581 aa11.08□□□□□ -0.64
COL6A4P1-201ENST00000446690 SH3RF3Q8TEJ3 882 aaPredicted RBP11.08□□□□□ -0.64
COL6A4P1-201ENST00000446690 FBXW7Q969H0 707 aa11.08□□□□□ -0.64
COL6A4P1-201ENST00000446690 TNMDQ9H2S6 317 aa11.08□□□□□ -0.64
COL6A4P1-201ENST00000446690 RCOR1Q9UKL0 485 aa11.08□□□□□ -0.64
COL6A4P1-201ENST00000446690 CACNA1SQ13698 1873 aa11.08□□□□□ -0.64
COL6A4P1-201ENST00000446690 KIF28PB7ZC32 967 aa11.07□□□□□ -0.64
COL6A4P1-201ENST00000446690 BAG3O95817 575 aa11.07□□□□□ -0.64
COL6A4P1-201ENST00000446690 MMP10P09238 476 aa11.07□□□□□ -0.64
COL6A4P1-201ENST00000446690 GSTO1P78417 241 aa11.07□□□□□ -0.64
COL6A4P1-201ENST00000446690 SF3A1Q15459 793 aaKnown RBP11.07□□□□□ -0.64
COL6A4P1-201ENST00000446690 IFIT1BQ5T764 474 aaKnown RBP11.07□□□□□ -0.64
COL6A4P1-201ENST00000446690 KRT40Q6A162 431 aa11.07□□□□□ -0.64
COL6A4P1-201ENST00000446690 OLFM4Q6UX06 510 aa11.07□□□□□ -0.64
COL6A4P1-201ENST00000446690 CCAR1Q8IX12 1150 aaKnown RBP11.07□□□□□ -0.64
COL6A4P1-201ENST00000446690 CKAP2LQ8IYA6 745 aa11.07□□□□□ -0.64
COL6A4P1-201ENST00000446690 FANCBQ8NB91 859 aa11.07□□□□□ -0.64
COL6A4P1-201ENST00000446690 CLIC4Q9Y696 253 aa11.07□□□□□ -0.64
COL6A4P1-201ENST00000446690 PARP3Q9Y6F1 533 aa11.07□□□□□ -0.64
COL6A4P1-201ENST00000446690 ATL3Q6DD88 541 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms