RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 PHIPQ8WWQ0 1821 aa18.05■□□□□ 0.48
HMGN1-208ENST00000443046 SALL1Q9NSC2 1324 aa18.05■□□□□ 0.48
HMGN1-208ENST00000443046 EYA2O00167 538 aa18.05■□□□□ 0.48
HMGN1-208ENST00000443046 SOX1O00570 391 aaPredicted RBP18.05■□□□□ 0.48
HMGN1-208ENST00000443046 ZBTB22O15209 634 aa18.05■□□□□ 0.48
HMGN1-208ENST00000443046 PTPRAP18433 802 aa18.05■□□□□ 0.48
HMGN1-208ENST00000443046 ATG9AQ7Z3C6 839 aa18.05■□□□□ 0.48
HMGN1-208ENST00000443046 SCYL3Q8IZE3 742 aa18.05■□□□□ 0.48
HMGN1-208ENST00000443046 SLC17A8Q8NDX2 589 aa18.05■□□□□ 0.48
HMGN1-208ENST00000443046 IDI2Q9BXS1 227 aa18.05■□□□□ 0.48
HMGN1-208ENST00000443046 CRISPLD2Q9H0B8 497 aa18.05■□□□□ 0.48
HMGN1-208ENST00000443046 USP40Q9NVE5 1235 aa18.05■□□□□ 0.48
HMGN1-208ENST00000443046 ZHX2Q9Y6X8 837 aa18.05■□□□□ 0.48
HMGN1-208ENST00000443046 ALPK3Q96L96 1907 aa18.05■□□□□ 0.48
HMGN1-208ENST00000443046 DOCK2Q92608 1830 aa18.05■□□□□ 0.48
HMGN1-208ENST00000443046 DLL1O00548 723 aa18.04■□□□□ 0.48
HMGN1-208ENST00000443046 INHAP05111 366 aa18.04■□□□□ 0.48
HMGN1-208ENST00000443046 SLC5A1P13866 664 aa18.04■□□□□ 0.48
HMGN1-208ENST00000443046 MRPL50Q8N5N7 158 aaKnown RBP18.04■□□□□ 0.48
HMGN1-208ENST00000443046 RFX7Q2KHR2 1363 aa18.04■□□□□ 0.48
HMGN1-208ENST00000443046 EVI5O60447 810 aa18.03■□□□□ 0.48
HMGN1-208ENST00000443046 ENTPD3O75355 529 aa18.03■□□□□ 0.48
HMGN1-208ENST00000443046 ELNP15502 786 aa18.03■□□□□ 0.48
HMGN1-208ENST00000443046 SH3BP5LQ7L8J4 393 aa18.03■□□□□ 0.48
HMGN1-208ENST00000443046 MRS2Q9HD23 443 aa18.03■□□□□ 0.48
HMGN1-208ENST00000443046 LDHBP07195 334 aaKnown RBP18.02■□□□□ 0.48
HMGN1-208ENST00000443046 DEFB118Q96PH6 123 aa18.02■□□□□ 0.48
HMGN1-208ENST00000443046 MYH2Q9UKX2 1941 aa18.02■□□□□ 0.47
HMGN1-208ENST00000443046 PTPRCP08575 1304 aa18.01■□□□□ 0.47
HMGN1-208ENST00000443046 TFRCP02786 760 aaKnown RBP18.01■□□□□ 0.47
HMGN1-208ENST00000443046 RGS3P49796 1198 aa18.01■□□□□ 0.47
HMGN1-208ENST00000443046 LRCH3Q96II8 777 aa18.01■□□□□ 0.47
HMGN1-208ENST00000443046 STAP2Q9UGK3 403 aa18.01■□□□□ 0.47
HMGN1-208ENST00000443046 DOCK1Q14185 1865 aa18.01■□□□□ 0.47
HMGN1-208ENST00000443046 GAKO14976 1311 aa18■□□□□ 0.47
HMGN1-208ENST00000443046 TNPO2O14787 897 aaKnown RBP18■□□□□ 0.47
HMGN1-208ENST00000443046 SEMA3EO15041 775 aa18■□□□□ 0.47
HMGN1-208ENST00000443046 BMP8BP34820 402 aa18■□□□□ 0.47
HMGN1-208ENST00000443046 ZEB1P37275 1124 aaPredicted RBP18■□□□□ 0.47
HMGN1-208ENST00000443046 GADL1Q6ZQY3 521 aa18■□□□□ 0.47
HMGN1-208ENST00000443046 GDF15Q99988 308 aa18■□□□□ 0.47
HMGN1-208ENST00000443046 PICK1Q9NRD5 415 aa18■□□□□ 0.47
HMGN1-208ENST00000443046 FBXO3Q9UK99 471 aa18■□□□□ 0.47
HMGN1-208ENST00000443046 ZNF521Q96K83 1311 aa17.99■□□□□ 0.47
HMGN1-208ENST00000443046 DDTLA6NHG4 134 aaPredicted RBP17.99■□□□□ 0.47
HMGN1-208ENST00000443046 CTNND1O60716 968 aaKnown RBP17.99■□□□□ 0.47
HMGN1-208ENST00000443046 SLURP2P0DP57 97 aa17.99■□□□□ 0.47
HMGN1-208ENST00000443046 GPR153Q6NV75 609 aa17.99■□□□□ 0.47
HMGN1-208ENST00000443046 FAM163AQ96GL9 167 aaPredicted RBP17.99■□□□□ 0.47
HMGN1-208ENST00000443046 PAWRQ96IZ0 340 aaKnown RBP17.99■□□□□ 0.47
HMGN1-208ENST00000443046 GNL3LQ9NVN8 582 aaKnown RBP17.99■□□□□ 0.47
HMGN1-208ENST00000443046 DENND2AQ9ULE3 1009 aa17.99■□□□□ 0.47
HMGN1-208ENST00000443046 CIAO1O76071 339 aa17.98■□□□□ 0.47
HMGN1-208ENST00000443046 ATP2B3Q16720 1220 aa17.98■□□□□ 0.47
HMGN1-208ENST00000443046 DDX4Q9NQI0 724 aaKnown RBP17.98■□□□□ 0.47
HMGN1-208ENST00000443046 AGTPBP1Q9UPW5 1226 aa17.98■□□□□ 0.47
HMGN1-208ENST00000443046 PHKA1P46020 1223 aa17.97■□□□□ 0.47
HMGN1-208ENST00000443046 MNX1P50219 401 aaPredicted RBP17.97■□□□□ 0.47
HMGN1-208ENST00000443046 FAM110CQ1W6H9 321 aa17.97■□□□□ 0.47
HMGN1-208ENST00000443046 NECAB2Q7Z6G3 386 aa17.97■□□□□ 0.47
HMGN1-208ENST00000443046 ANKRD13CQ8N6S4 541 aa17.97■□□□□ 0.47
HMGN1-208ENST00000443046 ANKLE1Q8NAG6 615 aa17.97■□□□□ 0.47
HMGN1-208ENST00000443046 SMCR8Q8TEV9 937 aaPredicted RBP17.97■□□□□ 0.47
HMGN1-208ENST00000443046 DIS3LQ8TF46 1054 aaKnown RBP17.97■□□□□ 0.47
HMGN1-208ENST00000443046 COA7Q96BR5 231 aa17.97■□□□□ 0.47
HMGN1-208ENST00000443046 LRRFIP2Q9Y608 721 aaKnown RBP17.97■□□□□ 0.47
HMGN1-208ENST00000443046 TBC1D12O60347 775 aa17.96■□□□□ 0.47
HMGN1-208ENST00000443046 TREML2Q5T2D2 321 aa17.96■□□□□ 0.47
HMGN1-208ENST00000443046 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.96■□□□□ 0.474e-10■■■■□ 24
HMGN1-208ENST00000443046 CEP126Q9P2H0 1117 aa17.96■□□□□ 0.47
HMGN1-208ENST00000443046 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.96■□□□□ 0.47
HMGN1-208ENST00000443046 EYSQ5T1H1 3165 aa17.96■□□□□ 0.47
HMGN1-208ENST00000443046 PDS5AQ29RF7 1337 aaKnown RBP17.96■□□□□ 0.46
HMGN1-208ENST00000443046 VCANP13611 3396 aa17.95■□□□□ 0.46
HMGN1-208ENST00000443046 LOC285556D6RIA3 1793 aa17.95■□□□□ 0.46
HMGN1-208ENST00000443046 TRIM75PA6NK02 468 aa17.95■□□□□ 0.46
HMGN1-208ENST00000443046 ZGPATQ8N5A5 531 aaKnown RBP17.95■□□□□ 0.46
HMGN1-208ENST00000443046 PROCA1Q8NCQ7 364 aaPredicted RBP17.95■□□□□ 0.46
HMGN1-208ENST00000443046 SSH1Q8WYL5 1049 aa17.95■□□□□ 0.46
HMGN1-208ENST00000443046 GJD2Q9UKL4 321 aa17.95■□□□□ 0.46
HMGN1-208ENST00000443046 NPM3O75607 178 aaKnown RBP17.94■□□□□ 0.46
HMGN1-208ENST00000443046 CCDC84Q86UT8 332 aaPredicted RBP17.94■□□□□ 0.46
HMGN1-208ENST00000443046 ZSCAN29Q8IWY8 852 aaPredicted RBP17.94■□□□□ 0.46
HMGN1-208ENST00000443046 PNMA3Q9UL41 463 aa17.94■□□□□ 0.46
HMGN1-208ENST00000443046 PLXNB2O15031 1838 aa17.93■□□□□ 0.46
HMGN1-208ENST00000443046 HMGCRP04035 888 aa17.93■□□□□ 0.46
HMGN1-208ENST00000443046 RHBDL3P58872 404 aa17.93■□□□□ 0.46
HMGN1-208ENST00000443046 LRIT3Q3SXY7 679 aa17.93■□□□□ 0.46
HMGN1-208ENST00000443046 CCDC102BQ68D86 513 aa17.93■□□□□ 0.46
HMGN1-208ENST00000443046 SIL1Q9H173 461 aa17.93■□□□□ 0.46
HMGN1-208ENST00000443046 GPR75-ASB3A0A0A6YYF3 556 aa17.92■□□□□ 0.46
HMGN1-208ENST00000443046 ADORA1P30542 326 aa17.92■□□□□ 0.46
HMGN1-208ENST00000443046 IL15P40933 162 aaPredicted RBP17.92■□□□□ 0.46
HMGN1-208ENST00000443046 BTDP43251 543 aa17.92■□□□□ 0.46
HMGN1-208ENST00000443046 GCLCP48506 637 aaPredicted RBP17.92■□□□□ 0.46
HMGN1-208ENST00000443046 RASGRF1Q13972 1273 aa17.92■□□□□ 0.46
HMGN1-208ENST00000443046 SLF2Q8IX21 1173 aa17.92■□□□□ 0.46
HMGN1-208ENST00000443046 ZNF384Q8TF68 577 aa17.92■□□□□ 0.46
HMGN1-208ENST00000443046 RPTORQ8N122 1335 aa17.92■□□□□ 0.46
HMGN1-208ENST00000443046 TRIM32Q13049 653 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms